Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47320 * 2 1 4 4 H 1.08999 * 109.46657 * 53.37614 * 3 2 1 5 5 C 1.50706 * 109.47070 * 173.37520 * 3 2 1 6 6 H 1.07995 * 119.99540 * 120.00155 * 5 3 2 7 7 C 1.37880 * 119.99771 * 299.99928 * 5 3 2 8 8 N 1.31515 * 120.00225 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99413 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47034 * 60.00482 * 9 7 5 11 11 H 1.48501 * 109.46683 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47071 * 300.00024 * 9 7 5 13 13 N 1.46894 * 109.47187 * 293.37444 * 3 2 1 14 14 C 1.46900 * 111.00101 * 156.83161 * 13 3 2 15 15 C 1.50700 * 109.47632 * 182.08589 * 14 13 3 16 16 C 1.38288 * 119.97318 * 269.73179 * 15 14 13 17 17 C 1.38242 * 120.11169 * 179.76390 * 16 15 14 18 18 C 1.38170 * 120.05350 * 0.50600 * 17 16 15 19 19 C 1.38711 * 119.94346 * 359.74332 * 18 17 16 20 20 O 1.35905 * 120.05148 * 180.02562 * 19 18 17 21 21 C 1.42893 * 116.99990 * 5.68950 * 20 19 18 22 22 C 1.54041 * 113.81452 * 253.24373 * 21 20 19 23 23 O 1.44181 * 85.51870 * 223.20031 * 22 21 20 24 24 C 1.44179 * 93.33909 * 24.19225 * 23 22 21 25 25 C 1.38124 * 119.96842 * 89.99511 * 15 14 13 26 26 H 1.09005 * 109.47221 * 184.03079 * 1 2 3 27 27 H 1.09000 * 109.47141 * 304.03072 * 1 2 3 28 28 H 1.08999 * 109.47432 * 64.03092 * 1 2 3 29 29 H 1.09003 * 109.47096 * 240.00528 * 2 1 3 30 30 H 1.09003 * 109.47429 * 120.00386 * 2 1 3 31 31 H 0.96992 * 119.99794 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00050 * 32.88176 * 13 3 2 33 33 H 1.09005 * 109.46954 * 302.08932 * 14 13 3 34 34 H 1.09000 * 109.47045 * 62.08801 * 14 13 3 35 35 H 1.08001 * 119.93979 * 0.02562 * 16 15 14 36 36 H 1.07995 * 119.97316 * 180.25216 * 17 16 15 37 37 H 1.07996 * 120.02765 * 179.72643 * 18 17 16 38 38 H 1.08997 * 113.00264 * 25.23037 * 21 20 19 39 39 H 1.09001 * 113.86384 * 337.34176 * 22 21 20 40 40 H 1.08994 * 113.86480 * 109.05109 * 22 21 20 41 41 H 1.09003 * 113.85972 * 221.66361 * 24 23 22 42 42 H 1.08993 * 113.98164 * 89.97382 * 24 23 22 43 43 H 1.07995 * 120.03455 * 359.96846 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5831 1.9894 0.8248 5 6 3.5381 1.4456 0.1639 6 1 4.1639 1.8829 -0.5999 7 6 4.1096 0.8902 1.2891 8 7 3.3474 0.3573 2.2190 9 14 5.9665 0.8947 1.4925 10 1 6.4610 2.2950 1.4929 11 1 6.3252 0.2422 2.7773 12 1 6.5894 0.1500 0.3688 13 7 1.6852 2.0873 -1.2713 14 6 1.6446 3.5487 -1.1270 15 6 1.2283 4.1713 -2.4348 16 6 2.1863 4.5268 -3.3666 17 6 1.8074 5.0936 -4.5692 18 6 0.4706 5.3160 -4.8386 19 6 -0.4919 4.9650 -3.9034 20 8 -1.8074 5.1823 -4.1664 21 6 -2.1379 5.6587 -5.4724 22 6 -2.5517 7.1421 -5.5070 23 8 -3.6006 6.7117 -6.3977 24 6 -3.5890 5.3607 -5.8944 25 6 -0.1093 4.3914 -2.6993 26 1 -0.3634 -1.0252 0.0722 27 1 -0.3633 0.5751 0.8517 28 1 -0.3634 0.4500 -0.9239 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.7496 -0.0337 3.0103 32 1 0.8080 1.7343 -1.6234 33 1 0.9268 3.8174 -0.3519 34 1 2.6332 3.9140 -0.8492 35 1 3.2320 4.3573 -3.1561 36 1 2.5571 5.3666 -5.2969 37 1 0.1754 5.7629 -5.7764 38 1 -1.3965 5.3889 -6.2244 39 1 -2.9130 7.5216 -4.5512 40 1 -1.8151 7.7945 -5.9759 41 1 -3.6751 4.6002 -6.6707 42 1 -4.2665 5.1940 -5.0571 43 1 -0.8569 4.1170 -1.9698 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -22.894945 kcal Electronic energy + Delta-G solvation = -22712.942295 eV Core-core repulsion = 19338.793536 eV Total energy + Delta-G solvation = -3374.148760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13019 -39.54175 -37.44225 -36.05542 -32.95861 -31.59919 -30.66702 -29.71635 -28.74114 -27.04188 -26.67790 -24.65133 -22.71554 -22.44736 -21.86028 -20.22856 -19.55691 -18.23728 -17.04157 -16.63673 -16.30796 -16.18108 -15.76568 -14.94243 -14.85719 -14.54540 -14.43109 -13.95341 -13.79781 -13.26910 -13.12938 -12.77088 -12.50938 -12.32328 -12.15422 -11.94388 -11.83150 -11.46947 -11.25005 -11.00823 -10.90021 -10.84294 -10.70530 -10.63081 -10.15294 -9.96391 -9.70050 -9.63187 -9.11890 -8.70169 -8.34243 -8.12304 -7.24612 -5.96775 -4.01235 1.42291 1.55128 2.96426 3.17629 3.33961 3.38318 3.41454 3.71772 3.93536 4.35355 4.44929 4.67899 4.85350 4.89989 4.92869 5.05175 5.17719 5.25254 5.32875 5.43127 5.51777 5.53698 5.59279 5.62005 5.76918 5.97665 6.16884 6.17813 6.19295 6.33165 6.41524 6.48729 6.55174 6.83588 6.85448 6.92174 7.08460 7.19114 7.37259 7.48223 7.78196 7.90841 8.26982 8.38467 8.74348 9.06120 9.63647 11.08568 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027160 B = 0.003037 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.675647 B = 9218.307429 C = 9982.639062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.679 5.679 14 C 0.102 3.898 15 C -0.027 4.027 16 C -0.131 4.131 17 C -0.083 4.083 18 C -0.218 4.218 19 C 0.118 3.882 20 O -0.304 6.304 21 C 0.013 3.987 22 C 0.021 3.979 23 O -0.373 6.373 24 C 0.044 3.956 25 C -0.146 4.146 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.260 0.740 32 H 0.318 0.682 33 H 0.028 0.972 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 10.325 -13.994 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.027 4.027 15 C -0.027 4.027 16 C -0.149 4.149 17 C -0.102 4.102 18 C -0.237 4.237 19 C 0.073 3.927 20 O -0.218 6.218 21 C -0.045 4.045 22 C -0.056 4.056 23 O -0.292 6.292 24 C -0.032 4.032 25 C -0.166 4.166 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.135 0.865 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.688 10.319 -14.098 19.977 hybrid contribution 0.377 0.033 0.572 0.685 sum -9.312 10.352 -13.526 19.412 Atomic orbital electron populations 1.21880 0.99587 0.99696 0.99585 1.21750 0.91267 1.00219 1.03066 1.19190 0.95634 0.90146 0.83885 0.98045 1.21164 0.91317 1.36994 1.03863 0.92089 1.24960 0.98044 0.95618 0.95902 1.69860 1.34674 1.39637 1.09439 0.86606 0.85748 0.78148 0.77139 1.20409 1.21475 1.20313 1.60780 1.35799 1.01591 1.32884 1.20871 1.01149 0.90354 0.90359 1.19985 0.91648 0.94397 0.96690 1.21067 1.00135 1.00147 0.93580 1.20909 0.94913 0.97468 0.96867 1.21093 0.93826 1.08680 1.00103 1.18917 0.82220 0.96701 0.94814 1.86183 1.22771 1.80957 1.31906 1.26178 0.98364 0.94329 0.85584 1.24639 0.89499 0.96462 0.94975 1.89738 1.58869 1.24615 1.55990 1.24301 0.93884 0.85952 0.99102 1.20360 0.96268 1.03772 0.96152 0.94388 0.93861 0.94635 0.94040 0.88187 0.93009 0.86479 0.95434 0.89655 0.85413 0.86018 0.86084 0.87045 0.88875 0.88431 0.87974 0.88730 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.68 37.15 0.36 -2.54 16 2 C -0.12 -2.92 5.37 -26.73 -0.14 -3.06 16 3 C 0.22 5.36 2.01 -68.86 -0.14 5.22 16 4 H 0.00 0.05 7.79 -51.93 -0.40 -0.35 16 5 C -0.49 -13.43 8.53 -34.44 -0.29 -13.73 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.28 11.29 55.43 0.63 -24.65 16 9 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -14.23 6.29 -109.22 -0.69 -14.92 16 14 C 0.10 1.90 5.62 -4.98 -0.03 1.87 16 15 C -0.03 -0.42 5.37 -104.65 -0.56 -0.98 16 16 C -0.13 -1.92 9.70 -39.56 -0.38 -2.30 16 17 C -0.08 -1.03 10.04 -39.60 -0.40 -1.43 16 18 C -0.22 -2.59 9.02 -39.43 -0.36 -2.94 16 19 C 0.12 1.56 6.68 -39.22 -0.26 1.30 16 20 O -0.30 -3.65 10.17 -19.44 -0.20 -3.85 16 21 C 0.01 0.11 3.93 -25.65 -0.10 0.01 16 22 C 0.02 0.17 9.05 37.61 0.34 0.51 16 23 O -0.37 -3.69 12.45 -35.23 -0.44 -4.12 16 24 C 0.04 0.36 9.05 37.61 0.34 0.70 16 25 C -0.15 -2.16 9.64 -39.43 -0.38 -2.54 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.62 6.63 -51.93 -0.34 0.28 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 2.63 5.92 -51.93 -0.31 2.32 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.32 6.22 6.61 -39.29 -0.26 5.96 16 33 H 0.03 0.51 7.95 -51.93 -0.41 0.10 16 34 H 0.09 1.69 7.91 -51.93 -0.41 1.28 16 35 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.12 5.91 -52.49 -0.31 0.81 16 38 H 0.11 0.89 5.96 -51.93 -0.31 0.58 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 352.03 15.07 5.30 5.30 Total: -1.00 -29.38 352.03 -9.05 -38.42 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.53 Total: 6.07 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -2.10 Total: -18.51 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.06 Total: -39.57 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.64 Total: -7.97 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.38 -9.05 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.528 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds