Wall clock time and date at job start Tue Mar 31 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47320 * 2 1 4 4 H 1.08999 * 109.46657 * 53.37614 * 3 2 1 5 5 C 1.50706 * 109.47070 * 173.37520 * 3 2 1 6 6 H 1.07995 * 119.99540 * 120.00155 * 5 3 2 7 7 C 1.37880 * 119.99771 * 299.99928 * 5 3 2 8 8 N 1.31515 * 120.00225 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99413 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47034 * 60.00482 * 9 7 5 11 11 H 1.48501 * 109.46683 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47071 * 300.00024 * 9 7 5 13 13 N 1.46894 * 109.47187 * 293.37444 * 3 2 1 14 14 C 1.46900 * 111.00101 * 156.83161 * 13 3 2 15 15 C 1.50700 * 109.47632 * 182.08589 * 14 13 3 16 16 C 1.38288 * 119.97318 * 269.73179 * 15 14 13 17 17 C 1.38242 * 120.11169 * 179.76390 * 16 15 14 18 18 C 1.38170 * 120.05350 * 0.50600 * 17 16 15 19 19 C 1.38711 * 119.94346 * 359.74332 * 18 17 16 20 20 O 1.35905 * 120.05148 * 180.02562 * 19 18 17 21 21 C 1.42893 * 116.99990 * 5.68950 * 20 19 18 22 22 C 1.54041 * 113.81452 * 253.24373 * 21 20 19 23 23 O 1.44181 * 85.51870 * 223.20031 * 22 21 20 24 24 C 1.44179 * 93.33909 * 24.19225 * 23 22 21 25 25 C 1.38124 * 119.96842 * 89.99511 * 15 14 13 26 26 H 1.09005 * 109.47221 * 184.03079 * 1 2 3 27 27 H 1.09000 * 109.47141 * 304.03072 * 1 2 3 28 28 H 1.08999 * 109.47432 * 64.03092 * 1 2 3 29 29 H 1.09003 * 109.47096 * 240.00528 * 2 1 3 30 30 H 1.09003 * 109.47429 * 120.00386 * 2 1 3 31 31 H 0.96992 * 119.99794 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00050 * 32.88176 * 13 3 2 33 33 H 1.09005 * 109.46954 * 302.08932 * 14 13 3 34 34 H 1.09000 * 109.47045 * 62.08801 * 14 13 3 35 35 H 1.08001 * 119.93979 * 0.02562 * 16 15 14 36 36 H 1.07995 * 119.97316 * 180.25216 * 17 16 15 37 37 H 1.07996 * 120.02765 * 179.72643 * 18 17 16 38 38 H 1.08997 * 113.00264 * 25.23037 * 21 20 19 39 39 H 1.09001 * 113.86384 * 337.34176 * 22 21 20 40 40 H 1.08994 * 113.86480 * 109.05109 * 22 21 20 41 41 H 1.09003 * 113.85972 * 221.66361 * 24 23 22 42 42 H 1.08993 * 113.98164 * 89.97382 * 24 23 22 43 43 H 1.07995 * 120.03455 * 359.96846 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5831 1.9894 0.8248 5 6 3.5381 1.4456 0.1639 6 1 4.1639 1.8829 -0.5999 7 6 4.1096 0.8902 1.2891 8 7 3.3474 0.3573 2.2190 9 14 5.9665 0.8947 1.4925 10 1 6.4610 2.2950 1.4929 11 1 6.3252 0.2422 2.7773 12 1 6.5894 0.1500 0.3688 13 7 1.6852 2.0873 -1.2713 14 6 1.6446 3.5487 -1.1270 15 6 1.2283 4.1713 -2.4348 16 6 2.1863 4.5268 -3.3666 17 6 1.8074 5.0936 -4.5692 18 6 0.4706 5.3160 -4.8386 19 6 -0.4919 4.9650 -3.9034 20 8 -1.8074 5.1823 -4.1664 21 6 -2.1379 5.6587 -5.4724 22 6 -2.5517 7.1421 -5.5070 23 8 -3.6006 6.7117 -6.3977 24 6 -3.5890 5.3607 -5.8944 25 6 -0.1093 4.3914 -2.6993 26 1 -0.3634 -1.0252 0.0722 27 1 -0.3633 0.5751 0.8517 28 1 -0.3634 0.4500 -0.9239 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.7496 -0.0337 3.0103 32 1 0.8080 1.7343 -1.6234 33 1 0.9268 3.8174 -0.3519 34 1 2.6332 3.9140 -0.8492 35 1 3.2320 4.3573 -3.1561 36 1 2.5571 5.3666 -5.2969 37 1 0.1754 5.7629 -5.7764 38 1 -1.3965 5.3889 -6.2244 39 1 -2.9130 7.5216 -4.5512 40 1 -1.8151 7.7945 -5.9759 41 1 -3.6751 4.6002 -6.6707 42 1 -4.2665 5.1940 -5.0571 43 1 -0.8569 4.1170 -1.9698 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:05 Heat of formation + Delta-G solvation = -41.338936 kcal Electronic energy + Delta-G solvation = -22713.742087 eV Core-core repulsion = 19338.793536 eV Total energy + Delta-G solvation = -3374.948551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88693 -40.49558 -38.63379 -37.61202 -34.66399 -33.37196 -31.72997 -31.01071 -29.55108 -28.54996 -27.63495 -26.19216 -24.40649 -23.47491 -22.94156 -21.48850 -21.06117 -19.20612 -18.38466 -17.79138 -17.37728 -17.03074 -16.87858 -16.70302 -16.05774 -15.82129 -15.70847 -15.41548 -15.03025 -14.59478 -14.24612 -14.07414 -13.76806 -13.69134 -13.40831 -13.14457 -13.00038 -12.86997 -12.70600 -12.60019 -12.55519 -12.28958 -11.97483 -11.92599 -11.66974 -11.53309 -11.34332 -11.05202 -10.79881 -10.41994 -9.83723 -9.15028 -9.02843 -8.05992 -6.18243 0.34886 0.49906 1.43050 1.44533 1.52149 2.11461 2.44818 2.55191 2.77148 3.13889 3.19419 3.67959 3.75738 3.90431 3.96868 4.08891 4.16547 4.31519 4.33848 4.43129 4.48732 4.51287 4.55159 4.56848 4.68872 4.71748 4.81739 4.85613 4.90510 4.97124 5.09266 5.11430 5.23175 5.31075 5.36557 5.50051 5.58141 5.72995 5.78365 5.80106 5.89580 6.35461 6.42684 6.46452 6.93879 6.96482 7.50567 8.97264 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027160 B = 0.003037 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.675647 B = 9218.307429 C = 9982.639062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.224 3.776 4 H -0.031 1.031 5 C -0.513 4.513 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.678 5.678 14 C 0.109 3.891 15 C -0.042 4.042 16 C -0.147 4.147 17 C -0.076 4.076 18 C -0.208 4.208 19 C 0.118 3.882 20 O -0.314 6.314 21 C 0.005 3.995 22 C 0.021 3.979 23 O -0.392 6.392 24 C 0.044 3.956 25 C -0.160 4.160 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.260 0.740 32 H 0.327 0.673 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.121 0.879 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.317 11.111 -16.362 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.116 3.884 4 H -0.014 1.014 5 C -0.552 4.552 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.309 5.309 14 C -0.020 4.020 15 C -0.043 4.043 16 C -0.166 4.166 17 C -0.094 4.094 18 C -0.226 4.226 19 C 0.074 3.926 20 O -0.229 6.229 21 C -0.051 4.051 22 C -0.055 4.055 23 O -0.311 6.311 24 C -0.032 4.032 25 C -0.179 4.179 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.114 0.886 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.980 11.115 -16.483 22.245 hybrid contribution 0.381 -0.145 1.236 1.301 sum -9.600 10.970 -15.247 21.095 Atomic orbital electron populations 1.21746 0.96372 1.01176 1.00356 1.21579 0.94170 0.98875 1.01239 1.18972 0.94293 0.90781 0.84319 1.01362 1.21437 0.92768 1.37079 1.03897 0.93019 1.25694 1.02289 0.95282 0.95624 1.69994 1.36260 1.40069 1.09719 0.85640 0.80672 0.78300 0.77164 1.19845 1.21005 1.19829 1.60659 1.36431 1.03027 1.30810 1.20723 0.99937 0.89018 0.92355 1.19665 0.92667 0.96170 0.95782 1.21134 0.99607 1.01230 0.94608 1.21221 0.96016 0.95927 0.96192 1.21450 0.93157 1.07222 1.00790 1.18943 0.83233 0.96048 0.94399 1.86182 1.21976 1.80954 1.33752 1.26468 0.99234 0.94893 0.84523 1.24747 0.89465 0.96322 0.94982 1.89728 1.59413 1.25527 1.56457 1.24448 0.93243 0.85792 0.99741 1.20319 0.95610 1.04753 0.97207 0.92319 0.94485 0.92633 0.94467 0.91243 0.93046 0.85486 0.96029 0.91663 0.86071 0.82921 0.82793 0.85555 0.89058 0.86520 0.86033 0.88647 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 9.68 71.98 0.70 -4.62 16 2 C -0.12 -5.73 5.37 30.59 0.16 -5.57 16 3 C 0.22 11.39 2.01 44.17 0.09 11.48 16 4 H -0.03 -1.76 7.79 -2.39 -0.02 -1.77 16 5 C -0.51 -28.70 8.53 25.60 0.22 -28.48 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.52 5.29 84.66 0.45 0.96 16 8 N -0.92 -53.20 11.29 21.45 0.24 -52.96 16 9 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 N -0.68 -29.12 6.29 -499.45 -3.14 -32.27 16 14 C 0.11 4.22 5.62 85.56 0.48 4.70 16 15 C -0.04 -1.35 5.37 -19.88 -0.11 -1.46 16 16 C -0.15 -4.21 9.70 22.28 0.22 -3.99 16 17 C -0.08 -1.66 10.04 22.25 0.22 -1.44 16 18 C -0.21 -4.22 9.02 22.37 0.20 -4.02 16 19 C 0.12 2.90 6.68 22.51 0.15 3.06 16 20 O -0.31 -6.89 10.17 -92.49 -0.94 -7.83 16 21 C 0.01 0.08 3.93 31.30 0.12 0.20 16 22 C 0.02 0.30 9.05 72.28 0.65 0.95 16 23 O -0.39 -6.84 12.45 -148.98 -1.86 -8.69 16 24 C 0.04 0.60 9.05 72.28 0.65 1.26 16 25 C -0.16 -4.65 9.64 22.37 0.22 -4.44 16 26 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.88 6.63 -2.39 -0.02 1.87 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 3.76 5.92 -2.39 -0.01 3.75 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.33 12.87 6.61 -89.69 -0.59 12.28 16 33 H 0.02 0.85 7.95 -2.38 -0.02 0.83 16 34 H 0.06 2.74 7.91 -2.39 -0.02 2.72 16 35 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 36 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.15 2.09 5.91 -2.91 -0.02 2.08 16 38 H 0.13 1.52 5.96 -2.39 -0.01 1.50 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -64.42 352.03 1.17 -63.25 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.41 Total: 23.69 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 4.43 Total: -31.41 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.90 Total: -85.22 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -2.80 Total: -16.52 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -64.42 1.17 -63.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.912 kcal (2) G-P(sol) polarization free energy of solvation -64.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds