Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 H 1.09001 * 109.46814 * 173.61412 * 3 2 1 5 5 C 1.50694 * 109.47303 * 53.61143 * 3 2 1 6 6 H 1.08004 * 120.00294 * 240.00373 * 5 3 2 7 7 C 1.37879 * 120.00232 * 60.00222 * 5 3 2 8 8 N 1.31519 * 119.99681 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00301 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47308 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47736 * 119.99562 * 9 7 5 12 12 H 1.48509 * 109.46992 * 240.00010 * 9 7 5 13 13 N 1.46904 * 109.46846 * 293.61295 * 3 2 1 14 14 C 1.46904 * 110.99792 * 275.23310 * 13 3 2 15 15 C 1.50702 * 109.47054 * 185.26268 * 14 13 3 16 16 C 1.38269 * 119.93871 * 90.00078 * 15 14 13 17 17 C 1.38146 * 120.05349 * 180.02562 * 16 15 14 18 18 C 1.38738 * 119.94370 * 359.97438 * 17 16 15 19 19 O 1.35893 * 120.05816 * 179.97438 * 18 17 16 20 20 C 1.42903 * 117.00061 * 354.12248 * 19 18 17 21 21 C 1.53367 * 114.56572 * 204.59769 * 20 19 18 22 22 O 1.43354 * 88.49525 * 220.44016 * 21 20 19 23 23 C 1.43351 * 88.32184 * 28.12722 * 22 21 20 24 24 C 1.38739 * 119.88733 * 0.27472 * 18 17 16 25 25 C 1.38147 * 119.94197 * 359.47560 * 24 18 17 26 26 H 1.08994 * 109.46996 * 305.90687 * 1 2 3 27 27 H 1.09002 * 109.46803 * 65.90968 * 1 2 3 28 28 H 1.09001 * 109.46948 * 185.90769 * 1 2 3 29 29 H 1.08997 * 109.47328 * 239.99786 * 2 1 3 30 30 H 1.08998 * 109.46907 * 119.99541 * 2 1 3 31 31 H 0.96999 * 119.99842 * 179.97438 * 8 7 5 32 32 H 1.00893 * 111.00111 * 39.18526 * 13 3 2 33 33 H 1.08998 * 109.47396 * 65.26395 * 14 13 3 34 34 H 1.08999 * 109.47114 * 305.26326 * 14 13 3 35 35 H 1.07996 * 119.97806 * 359.97268 * 16 15 14 36 36 H 1.07997 * 120.03470 * 179.97438 * 17 16 15 37 37 H 1.09004 * 113.56181 * 338.86669 * 20 19 18 38 38 H 1.08998 * 113.39213 * 105.51554 * 21 20 19 39 39 H 1.08996 * 113.39135 * 335.35660 * 21 20 19 40 40 H 1.08998 * 113.39090 * 86.74573 * 23 22 21 41 41 H 1.09000 * 113.39026 * 216.91056 * 23 22 21 42 42 H 1.07997 * 120.02999 * 179.72131 * 24 18 17 43 43 H 1.07996 * 119.97119 * 180.23138 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1241 1.4446 0.1143 5 6 1.4129 2.1971 1.1437 6 1 0.8074 3.0697 0.9476 7 6 1.6118 1.7735 2.4407 8 7 2.3486 0.7106 2.6795 9 14 0.8338 2.7085 3.8583 10 1 0.0580 3.8579 3.3269 11 1 -0.0731 1.8039 4.6096 12 1 1.8983 3.2075 4.7657 13 7 1.6802 2.0890 -1.2691 14 6 2.6761 1.7979 -2.3091 15 6 2.3446 2.5790 -3.5546 16 6 2.8672 3.8465 -3.7338 17 6 2.5645 4.5647 -4.8744 18 6 1.7358 4.0130 -5.8407 19 8 1.4361 4.7177 -6.9633 20 6 1.9016 6.0673 -7.0257 21 6 1.0912 6.9789 -7.9554 22 8 2.3238 7.5674 -8.3907 23 6 2.9733 6.3245 -8.0935 24 6 1.2086 2.7431 -5.6560 25 6 1.5185 2.0269 -4.5160 26 1 -0.3633 0.6027 0.8323 27 1 -0.3633 0.4195 -0.9382 28 1 -0.3633 -1.0222 0.1058 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.4889 0.4129 3.5920 32 1 0.7562 1.8135 -1.5660 33 1 2.6645 0.7317 -2.5351 34 1 3.6663 2.0833 -1.9540 35 1 3.5119 4.2757 -2.9812 36 1 2.9726 5.5548 -5.0139 37 1 2.1226 6.4976 -6.0489 38 1 0.4437 7.6751 -7.4224 39 1 0.5679 6.4378 -8.7437 40 1 2.9418 5.6119 -8.9176 41 1 3.9751 6.4474 -7.6820 42 1 0.5596 2.3132 -6.4046 43 1 1.1113 1.0368 -4.3735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -18.399759 kcal Electronic energy + Delta-G solvation = -22605.877702 eV Core-core repulsion = 19231.923868 eV Total energy + Delta-G solvation = -3373.953834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40827 -39.67086 -37.59573 -36.17311 -32.87368 -31.24432 -30.97419 -29.83390 -28.85392 -26.72759 -26.36021 -24.19974 -23.30175 -23.11961 -21.42200 -20.51690 -19.29699 -18.77635 -17.01403 -16.59624 -16.40773 -16.11580 -15.36481 -14.89426 -14.80762 -14.68259 -14.37803 -13.98737 -13.47878 -13.36051 -13.08360 -12.88185 -12.72784 -12.48541 -12.25210 -12.09514 -11.81455 -11.60101 -11.29516 -10.92394 -10.78186 -10.69694 -10.59096 -10.51292 -10.22955 -9.98455 -9.79622 -9.56153 -8.98374 -8.91113 -8.35430 -8.04252 -7.20940 -5.98224 -3.99438 1.42190 1.51109 2.92966 3.30914 3.39327 3.44346 3.44675 3.62187 3.90143 4.32281 4.44841 4.76158 4.86565 4.87428 4.90964 5.07665 5.12904 5.16541 5.33641 5.37701 5.47093 5.48753 5.52788 5.62689 5.73534 5.92158 6.18214 6.21604 6.33906 6.35244 6.37267 6.46992 6.57013 6.81050 6.87500 6.89560 7.26856 7.28254 7.33536 7.52603 7.68901 7.88900 8.27363 8.53598 8.61647 9.06717 9.64190 11.08885 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025705 B = 0.002837 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.034549 B = 9867.430439 C =10419.414582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.679 5.679 14 C 0.097 3.903 15 C -0.094 4.094 16 C -0.059 4.059 17 C -0.208 4.208 18 C 0.110 3.890 19 O -0.300 6.300 20 C 0.011 3.989 21 C 0.034 3.966 22 O -0.358 6.358 23 C 0.014 3.986 24 C -0.149 4.149 25 C -0.078 4.078 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.023 0.977 29 H 0.010 0.990 30 H 0.092 0.908 31 H 0.258 0.742 32 H 0.327 0.673 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.126 0.874 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 6.237 -19.101 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.033 4.033 15 C -0.095 4.095 16 C -0.077 4.077 17 C -0.227 4.227 18 C 0.066 3.934 19 O -0.214 6.214 20 C -0.046 4.046 21 C -0.043 4.043 22 O -0.277 6.277 23 C -0.063 4.063 24 C -0.168 4.168 25 C -0.097 4.097 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.144 0.856 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.013 6.943 -19.037 20.264 hybrid contribution -0.504 -0.537 0.830 1.110 sum -0.491 6.406 -18.207 19.308 Atomic orbital electron populations 1.21602 0.97644 0.98728 1.00756 1.22108 0.95104 1.01122 1.00165 1.19249 0.96133 0.88677 0.85245 0.94929 1.21101 1.30276 1.11485 0.89744 0.91976 1.24914 0.95606 0.95182 0.98693 1.69897 1.39489 1.24238 1.19977 0.86530 0.79074 0.79942 0.82410 1.19750 1.21238 1.21204 1.60861 1.03632 1.63287 1.03142 1.20847 0.97742 0.95336 0.89335 1.20016 0.97997 0.95344 0.96163 1.20878 0.97938 0.93356 0.95560 1.21182 1.03665 1.01332 0.96478 1.18925 0.96005 0.92313 0.86202 1.86115 1.73991 1.23947 1.37386 1.25575 0.96045 0.82291 1.00701 1.24009 0.89617 0.94276 0.96349 1.89936 1.21111 1.28777 1.87893 1.24350 0.98558 0.86033 0.97333 1.20334 1.03716 0.93115 0.99622 1.20908 0.96641 0.99544 0.92602 0.91138 0.95453 0.95819 0.97082 0.89005 0.93188 0.85464 0.95519 0.90919 0.85448 0.85793 0.86150 0.88437 0.88998 0.89088 0.88796 0.85594 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.40 37.16 0.35 -2.38 16 2 C -0.15 -3.33 5.49 -26.73 -0.15 -3.48 16 3 C 0.21 5.17 2.33 -68.87 -0.16 5.01 16 4 H 0.03 0.87 7.72 -51.93 -0.40 0.47 16 5 C -0.49 -12.98 7.21 -34.44 -0.25 -13.23 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.52 5.23 -17.82 -0.09 1.43 16 8 N -0.90 -24.99 11.39 55.43 0.63 -24.36 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -13.96 6.19 -109.22 -0.68 -14.63 16 14 C 0.10 1.68 5.63 -4.97 -0.03 1.65 16 15 C -0.09 -1.43 5.44 -104.60 -0.57 -1.99 16 16 C -0.06 -0.83 9.69 -39.60 -0.38 -1.21 16 17 C -0.21 -2.58 9.04 -39.43 -0.36 -2.93 16 18 C 0.11 1.38 6.68 -39.21 -0.26 1.12 16 19 O -0.30 -3.37 10.21 -19.40 -0.20 -3.57 16 20 C 0.01 0.10 4.31 -26.30 -0.11 -0.01 16 21 C 0.03 0.27 8.59 24.60 0.21 0.48 16 22 O -0.36 -3.53 12.74 -35.23 -0.45 -3.98 16 23 C 0.01 0.12 8.60 24.65 0.21 0.33 16 24 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 25 C -0.08 -1.06 9.69 -39.61 -0.38 -1.44 16 26 H 0.07 1.64 6.75 -51.93 -0.35 1.29 16 27 H 0.03 0.51 6.72 -51.93 -0.35 0.16 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.01 0.22 7.40 -51.93 -0.38 -0.16 16 30 H 0.09 2.37 6.27 -51.93 -0.33 2.05 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.33 6.53 6.79 -39.30 -0.27 6.27 16 33 H 0.03 0.46 7.39 -51.93 -0.38 0.07 16 34 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 35 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.12 1.25 5.84 -52.49 -0.31 0.94 16 37 H 0.12 1.00 5.79 -51.93 -0.30 0.70 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -28.79 348.27 -9.23 -38.03 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.40 Total: 6.08 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.37 Total: -18.95 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: -0.04 Total: -38.99 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.65 Total: -7.55 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.79 -9.23 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.629 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds