Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 H 1.09001 * 109.46814 * 173.61412 * 3 2 1 5 5 C 1.50694 * 109.47303 * 53.61143 * 3 2 1 6 6 H 1.08004 * 120.00294 * 240.00373 * 5 3 2 7 7 C 1.37879 * 120.00232 * 60.00222 * 5 3 2 8 8 N 1.31519 * 119.99681 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00301 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47308 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47736 * 119.99562 * 9 7 5 12 12 H 1.48509 * 109.46992 * 240.00010 * 9 7 5 13 13 N 1.46904 * 109.46846 * 293.61295 * 3 2 1 14 14 C 1.46904 * 110.99792 * 275.23310 * 13 3 2 15 15 C 1.50702 * 109.47054 * 185.26268 * 14 13 3 16 16 C 1.38269 * 119.93871 * 90.00078 * 15 14 13 17 17 C 1.38146 * 120.05349 * 180.02562 * 16 15 14 18 18 C 1.38738 * 119.94370 * 359.97438 * 17 16 15 19 19 O 1.35893 * 120.05816 * 179.97438 * 18 17 16 20 20 C 1.42903 * 117.00061 * 354.12248 * 19 18 17 21 21 C 1.53367 * 114.56572 * 204.59769 * 20 19 18 22 22 O 1.43354 * 88.49525 * 220.44016 * 21 20 19 23 23 C 1.43351 * 88.32184 * 28.12722 * 22 21 20 24 24 C 1.38739 * 119.88733 * 0.27472 * 18 17 16 25 25 C 1.38147 * 119.94197 * 359.47560 * 24 18 17 26 26 H 1.08994 * 109.46996 * 305.90687 * 1 2 3 27 27 H 1.09002 * 109.46803 * 65.90968 * 1 2 3 28 28 H 1.09001 * 109.46948 * 185.90769 * 1 2 3 29 29 H 1.08997 * 109.47328 * 239.99786 * 2 1 3 30 30 H 1.08998 * 109.46907 * 119.99541 * 2 1 3 31 31 H 0.96999 * 119.99842 * 179.97438 * 8 7 5 32 32 H 1.00893 * 111.00111 * 39.18526 * 13 3 2 33 33 H 1.08998 * 109.47396 * 65.26395 * 14 13 3 34 34 H 1.08999 * 109.47114 * 305.26326 * 14 13 3 35 35 H 1.07996 * 119.97806 * 359.97268 * 16 15 14 36 36 H 1.07997 * 120.03470 * 179.97438 * 17 16 15 37 37 H 1.09004 * 113.56181 * 338.86669 * 20 19 18 38 38 H 1.08998 * 113.39213 * 105.51554 * 21 20 19 39 39 H 1.08996 * 113.39135 * 335.35660 * 21 20 19 40 40 H 1.08998 * 113.39090 * 86.74573 * 23 22 21 41 41 H 1.09000 * 113.39026 * 216.91056 * 23 22 21 42 42 H 1.07997 * 120.02999 * 179.72131 * 24 18 17 43 43 H 1.07996 * 119.97119 * 180.23138 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1241 1.4446 0.1143 5 6 1.4129 2.1971 1.1437 6 1 0.8074 3.0697 0.9476 7 6 1.6118 1.7735 2.4407 8 7 2.3486 0.7106 2.6795 9 14 0.8338 2.7085 3.8583 10 1 0.0580 3.8579 3.3269 11 1 -0.0731 1.8039 4.6096 12 1 1.8983 3.2075 4.7657 13 7 1.6802 2.0890 -1.2691 14 6 2.6761 1.7979 -2.3091 15 6 2.3446 2.5790 -3.5546 16 6 2.8672 3.8465 -3.7338 17 6 2.5645 4.5647 -4.8744 18 6 1.7358 4.0130 -5.8407 19 8 1.4361 4.7177 -6.9633 20 6 1.9016 6.0673 -7.0257 21 6 1.0912 6.9789 -7.9554 22 8 2.3238 7.5674 -8.3907 23 6 2.9733 6.3245 -8.0935 24 6 1.2086 2.7431 -5.6560 25 6 1.5185 2.0269 -4.5160 26 1 -0.3633 0.6027 0.8323 27 1 -0.3633 0.4195 -0.9382 28 1 -0.3633 -1.0222 0.1058 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.4889 0.4129 3.5920 32 1 0.7562 1.8135 -1.5660 33 1 2.6645 0.7317 -2.5351 34 1 3.6663 2.0833 -1.9540 35 1 3.5119 4.2757 -2.9812 36 1 2.9726 5.5548 -5.0139 37 1 2.1226 6.4976 -6.0489 38 1 0.4437 7.6751 -7.4224 39 1 0.5679 6.4378 -8.7437 40 1 2.9418 5.6119 -8.9176 41 1 3.9751 6.4474 -7.6820 42 1 0.5596 2.3132 -6.4046 43 1 1.1113 1.0368 -4.3735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = -36.018629 kcal Electronic energy + Delta-G solvation = -22606.641714 eV Core-core repulsion = 19231.923868 eV Total energy + Delta-G solvation = -3374.717846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.12543 -40.61122 -38.78068 -37.68602 -34.59472 -32.87100 -32.02849 -30.95363 -29.91805 -28.17407 -27.32201 -25.71711 -24.92167 -24.18625 -22.44301 -21.43603 -21.10259 -19.63478 -18.25026 -17.72980 -17.31960 -16.94548 -16.85070 -16.62981 -15.97488 -15.75252 -15.38468 -15.36093 -14.83826 -14.70318 -14.38541 -14.25052 -13.80663 -13.74895 -13.52603 -13.09358 -13.05518 -12.95364 -12.80609 -12.62315 -12.42156 -12.27637 -11.83748 -11.77092 -11.62759 -11.42583 -11.35342 -10.93927 -10.87802 -10.42372 -9.91709 -9.10755 -8.85322 -8.04155 -6.12125 0.41142 0.46688 1.41975 1.45245 1.56058 2.10942 2.46573 2.76230 2.82190 3.06028 3.24713 3.65114 3.82053 3.88298 4.01689 4.11912 4.16724 4.29655 4.32242 4.45543 4.51639 4.53556 4.57686 4.63441 4.67931 4.73927 4.81859 4.84244 4.85742 4.92034 5.12258 5.14376 5.32540 5.38797 5.40803 5.46426 5.72980 5.76108 5.79637 5.80381 5.86485 6.33869 6.41217 6.70516 6.87336 7.01340 7.55580 9.01221 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025705 B = 0.002837 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.034549 B = 9867.430439 C =10419.414582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.221 3.779 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.051 0.949 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.103 3.897 15 C -0.114 4.114 16 C -0.071 4.071 17 C -0.206 4.206 18 C 0.112 3.888 19 O -0.303 6.303 20 C 0.003 3.997 21 C 0.036 3.964 22 O -0.379 6.379 23 C 0.015 3.985 24 C -0.153 4.153 25 C -0.079 4.079 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.258 0.742 32 H 0.332 0.668 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 6.928 -20.629 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.313 5.313 14 C -0.026 4.026 15 C -0.115 4.115 16 C -0.089 4.089 17 C -0.225 4.225 18 C 0.068 3.932 19 O -0.217 6.217 20 C -0.054 4.054 21 C -0.041 4.041 22 O -0.298 6.298 23 C -0.061 4.061 24 C -0.171 4.171 25 C -0.097 4.097 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.163 0.837 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.011 7.643 -20.587 21.984 hybrid contribution -0.161 -0.699 1.183 1.384 sum -1.173 6.944 -19.404 20.643 Atomic orbital electron populations 1.21485 0.95960 0.99564 1.00861 1.21955 0.96533 0.99965 0.99380 1.18986 0.93774 0.89524 0.86482 0.98378 1.21307 1.30084 1.11294 0.90940 0.93069 1.25573 0.96073 0.95923 1.00863 1.70021 1.40460 1.25335 1.20320 0.85634 0.78257 0.78863 0.79641 1.19423 1.20772 1.21096 1.60724 1.04598 1.63053 1.02882 1.20762 0.96272 0.96044 0.89495 1.19831 0.99979 0.95887 0.95778 1.20950 0.98251 0.93365 0.96354 1.21356 1.03352 1.02096 0.95668 1.19060 0.95357 0.92429 0.86400 1.86117 1.73980 1.24980 1.36645 1.25770 0.96959 0.81285 1.01358 1.24126 0.89277 0.94255 0.96395 1.89929 1.22143 1.29636 1.88085 1.24432 0.98864 0.85564 0.97262 1.20561 1.03733 0.93180 0.99630 1.21019 0.96105 1.00124 0.92471 0.93628 0.93227 0.94022 0.95390 0.92159 0.93247 0.84910 0.95099 0.92153 0.85794 0.83633 0.85627 0.87070 0.88119 0.88446 0.87679 0.83704 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.40 71.98 0.68 -4.31 16 2 C -0.14 -6.37 5.49 30.60 0.17 -6.20 16 3 C 0.22 10.84 2.33 44.17 0.10 10.95 16 4 H 0.00 -0.10 7.72 -2.39 -0.02 -0.11 16 5 C -0.50 -26.89 7.21 25.60 0.18 -26.70 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.75 5.23 84.65 0.44 1.19 16 8 N -0.92 -52.29 11.39 21.45 0.24 -52.04 16 9 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.68 -28.09 6.19 -499.45 -3.09 -31.18 16 14 C 0.10 3.59 5.63 85.56 0.48 4.08 16 15 C -0.11 -3.36 5.44 -19.85 -0.11 -3.47 16 16 C -0.07 -1.94 9.69 22.26 0.22 -1.72 16 17 C -0.21 -4.75 9.04 22.37 0.20 -4.54 16 18 C 0.11 2.57 6.68 22.51 0.15 2.72 16 19 O -0.30 -6.05 10.21 -92.34 -0.94 -6.99 16 20 C 0.00 0.05 4.31 30.87 0.13 0.18 16 21 C 0.04 0.49 8.59 63.85 0.55 1.03 16 22 O -0.38 -6.73 12.74 -148.98 -1.90 -8.63 16 23 C 0.02 0.22 8.60 63.88 0.55 0.77 16 24 C -0.15 -3.50 9.99 22.37 0.22 -3.28 16 25 C -0.08 -2.00 9.69 22.25 0.22 -1.78 16 26 H 0.04 2.09 6.75 -2.39 -0.02 2.07 16 27 H 0.05 1.78 6.72 -2.39 -0.02 1.77 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.03 1.16 7.40 -2.39 -0.02 1.14 16 30 H 0.06 3.17 6.27 -2.39 -0.01 3.15 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.33 12.99 6.79 -89.70 -0.61 12.38 16 33 H 0.03 1.04 7.39 -2.39 -0.02 1.02 16 34 H 0.06 2.21 7.87 -2.39 -0.02 2.19 16 35 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.15 2.61 5.84 -2.91 -0.02 2.59 16 37 H 0.13 1.79 5.79 -2.38 -0.01 1.78 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -61.44 348.27 0.92 -60.52 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.40 Total: 23.74 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 4.19 Total: -31.09 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.85 Total: -83.23 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -2.84 Total: -15.62 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -61.44 0.92 -60.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.499 kcal (2) G-P(sol) polarization free energy of solvation -61.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds