Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 H 1.09005 * 109.47248 * 185.21300 * 3 2 1 5 5 C 1.50703 * 109.47385 * 305.20958 * 3 2 1 6 6 H 1.08002 * 119.99726 * 119.99443 * 5 3 2 7 7 C 1.37881 * 120.00113 * 300.00386 * 5 3 2 8 8 N 1.31509 * 119.99872 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99737 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47382 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46941 * 119.99938 * 9 7 5 12 12 H 1.48503 * 109.47213 * 239.99907 * 9 7 5 13 13 N 1.46894 * 109.47479 * 65.21358 * 3 2 1 14 14 C 1.46904 * 111.00275 * 86.64451 * 13 3 2 15 15 C 1.50698 * 109.47475 * 183.01748 * 14 13 3 16 16 C 1.38269 * 119.94189 * 89.99996 * 15 14 13 17 17 C 1.38146 * 120.05237 * 180.02562 * 16 15 14 18 18 C 1.38734 * 119.94686 * 359.97438 * 17 16 15 19 19 O 1.35890 * 120.05820 * 180.02562 * 18 17 16 20 20 C 1.42908 * 117.00111 * 354.63793 * 19 18 17 21 21 C 1.53362 * 114.57004 * 201.69606 * 20 19 18 22 22 O 1.43345 * 88.49654 * 220.44492 * 21 20 19 23 23 C 1.43350 * 88.32547 * 28.12591 * 22 21 20 24 24 C 1.38729 * 119.88658 * 0.27899 * 18 17 16 25 25 C 1.38152 * 119.94498 * 359.42601 * 24 18 17 26 26 H 1.08996 * 109.46789 * 182.89879 * 1 2 3 27 27 H 1.09004 * 109.46473 * 302.88921 * 1 2 3 28 28 H 1.08993 * 109.47519 * 62.88896 * 1 2 3 29 29 H 1.08998 * 109.46844 * 240.00318 * 2 1 3 30 30 H 1.08998 * 109.47523 * 120.00152 * 2 1 3 31 31 H 0.97001 * 120.00051 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99836 * 322.69783 * 13 3 2 33 33 H 1.09002 * 109.46245 * 63.01929 * 14 13 3 34 34 H 1.08999 * 109.46891 * 303.02114 * 14 13 3 35 35 H 1.07998 * 119.97460 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.02313 * 179.97438 * 17 16 15 37 37 H 1.09003 * 113.56083 * 335.96876 * 20 19 18 38 38 H 1.08999 * 113.39360 * 105.51955 * 21 20 19 39 39 H 1.09001 * 113.38822 * 335.36526 * 21 20 19 40 40 H 1.08991 * 113.39244 * 86.74799 * 23 22 21 41 41 H 1.08997 * 113.39644 * 216.91354 * 23 22 21 42 42 H 1.08002 * 120.02992 * 179.71884 * 24 18 17 43 43 H 1.08000 * 119.97483 * 180.27536 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4440 -0.0934 5 6 1.4351 2.1892 -1.1609 6 1 0.8260 3.0631 -0.9824 7 6 1.6591 1.7567 -2.4508 8 7 2.4010 0.6929 -2.6681 9 14 0.9087 2.6819 -3.8896 10 1 0.1230 3.8349 -3.3811 11 1 1.9905 3.1748 -4.7795 12 1 0.0165 1.7721 -4.6521 13 7 1.6558 2.0977 1.2573 14 6 2.6542 1.8507 2.3063 15 6 2.1910 2.4742 3.5976 16 6 1.4203 1.7406 4.4807 17 6 0.9939 2.3101 5.6649 18 6 1.3401 3.6189 5.9681 19 8 0.9224 4.1811 7.1326 20 6 0.0332 3.4099 7.9431 21 6 -0.8032 4.2316 8.9317 22 8 -0.5907 3.2034 9.9077 23 6 0.6465 2.8955 9.2524 24 6 2.1090 4.3544 5.0780 25 6 2.5381 3.7784 3.8978 26 1 -0.3633 -1.0263 0.0520 27 1 -0.3632 0.5581 0.8630 28 1 -0.3634 0.4683 -0.9147 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.5583 0.3883 -3.5755 32 1 0.7384 1.8006 1.5543 33 1 3.6070 2.2906 2.0116 34 1 2.7773 0.7766 2.4449 35 1 1.1507 0.7219 4.2440 36 1 0.3916 1.7368 6.3541 37 1 -0.5307 2.6640 7.3830 38 1 -1.8463 4.3363 8.6335 39 1 -0.3449 5.1837 9.1993 40 1 1.4839 3.4984 9.6033 41 1 0.8739 1.8296 9.2357 42 1 2.3761 5.3749 5.3096 43 1 3.1404 4.3492 3.2066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = -18.115413 kcal Electronic energy + Delta-G solvation = -22638.302978 eV Core-core repulsion = 19264.361474 eV Total energy + Delta-G solvation = -3373.941504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.43376 -39.69073 -37.61850 -36.17514 -32.87395 -31.23871 -31.01078 -29.84253 -28.86438 -26.75089 -26.36340 -24.19392 -23.28781 -23.17704 -21.39402 -20.56952 -19.29793 -18.78625 -17.06724 -16.66450 -16.37673 -16.07087 -15.31498 -15.05532 -14.77717 -14.65249 -14.40996 -14.02159 -13.50507 -13.27594 -13.06475 -12.98728 -12.72518 -12.43868 -12.27552 -12.12673 -11.87255 -11.61026 -11.22763 -10.92389 -10.87529 -10.68081 -10.59435 -10.52219 -10.25627 -9.97839 -9.80430 -9.57003 -8.98771 -8.92102 -8.34729 -8.07444 -7.20358 -5.97453 -3.98807 1.42032 1.47216 2.90624 3.31460 3.39830 3.42445 3.45041 3.60300 3.88064 4.30081 4.45542 4.73848 4.82537 4.85722 4.88348 5.05401 5.11076 5.16823 5.34356 5.35994 5.44987 5.46728 5.50955 5.63002 5.73199 5.93144 6.14696 6.23652 6.31449 6.33387 6.36038 6.43631 6.55656 6.80746 6.86930 6.88546 7.25978 7.26701 7.31471 7.48382 7.69591 7.89822 8.27996 8.54532 8.61548 9.07504 9.65048 11.09613 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030555 B = 0.002741 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.158299 B =10211.554039 C =10354.348319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.097 3.903 15 C -0.098 4.098 16 C -0.077 4.077 17 C -0.208 4.208 18 C 0.111 3.889 19 O -0.300 6.300 20 C 0.012 3.988 21 C 0.036 3.964 22 O -0.359 6.359 23 C 0.013 3.987 24 C -0.149 4.149 25 C -0.060 4.060 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.258 0.742 32 H 0.327 0.673 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 3.435 20.199 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.106 3.894 4 H 0.051 0.949 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.309 5.309 14 C -0.032 4.032 15 C -0.098 4.098 16 C -0.096 4.096 17 C -0.227 4.227 18 C 0.066 3.934 19 O -0.214 6.214 20 C -0.046 4.046 21 C -0.041 4.041 22 O -0.277 6.277 23 C -0.064 4.064 24 C -0.168 4.168 25 C -0.078 4.078 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.145 0.855 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.358 4.029 20.173 20.706 hybrid contribution -0.600 -0.776 -0.751 1.235 sum -2.958 3.253 19.422 19.913 Atomic orbital electron populations 1.21559 0.97686 0.97860 1.01350 1.22104 0.95007 1.01147 1.00235 1.19233 0.96000 0.88606 0.85519 0.94931 1.21112 1.30356 1.11446 0.89603 0.91966 1.24915 0.95586 0.95192 0.98739 1.69888 1.39167 1.24089 1.20548 0.86525 0.78969 0.79901 0.82536 1.19745 1.21209 1.21263 1.60955 1.03576 1.63143 1.03265 1.20872 0.97138 0.96754 0.88453 1.20033 0.98773 0.94584 0.96456 1.20878 0.96171 0.99700 0.92855 1.21113 1.06418 0.94972 1.00147 1.18930 0.96434 0.92062 0.85933 1.86120 1.60914 1.43884 1.30475 1.25551 0.92253 0.95744 0.91012 1.23985 1.01369 0.93378 0.85378 1.89935 1.35897 1.51078 1.50824 1.24364 0.89386 1.02816 0.89817 1.20420 1.01905 1.00317 0.94131 1.20936 0.97752 0.94300 0.94830 0.95925 0.95113 0.91616 0.88882 0.97126 0.93196 0.85491 0.90909 0.95508 0.86017 0.85888 0.86304 0.88416 0.88942 0.89046 0.88838 0.85451 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.39 37.16 0.35 -2.32 16 2 C -0.15 -3.33 5.51 -26.73 -0.15 -3.48 16 3 C 0.21 5.17 2.33 -68.87 -0.16 5.01 16 4 H 0.03 0.87 7.81 -51.93 -0.41 0.47 16 5 C -0.49 -13.00 7.40 -34.44 -0.25 -13.26 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.51 5.26 -17.82 -0.09 1.42 16 8 N -0.90 -25.06 11.38 55.43 0.63 -24.43 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.68 -13.99 6.25 -109.22 -0.68 -14.68 16 14 C 0.10 1.69 5.60 -4.97 -0.03 1.66 16 15 C -0.10 -1.47 5.36 -104.60 -0.56 -2.03 16 16 C -0.08 -1.04 9.69 -39.60 -0.38 -1.42 16 17 C -0.21 -2.49 9.03 -39.43 -0.36 -2.85 16 18 C 0.11 1.38 6.68 -39.22 -0.26 1.11 16 19 O -0.30 -3.33 10.21 -19.40 -0.20 -3.53 16 20 C 0.01 0.10 4.23 -26.31 -0.11 -0.01 16 21 C 0.04 0.28 8.59 24.60 0.21 0.49 16 22 O -0.36 -3.46 12.74 -35.23 -0.45 -3.91 16 23 C 0.01 0.11 8.60 24.65 0.21 0.32 16 24 C -0.15 -1.91 9.99 -39.43 -0.39 -2.30 16 25 C -0.06 -0.83 9.69 -39.60 -0.38 -1.22 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.59 6.34 -51.93 -0.33 0.26 16 28 H 0.06 1.52 7.15 -51.93 -0.37 1.15 16 29 H 0.09 2.41 6.23 -51.93 -0.32 2.09 16 30 H 0.01 0.22 7.43 -51.93 -0.39 -0.17 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.33 6.54 6.46 -39.29 -0.25 6.28 16 33 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 34 H 0.03 0.47 7.37 -51.93 -0.38 0.08 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.12 1.18 5.88 -52.49 -0.31 0.88 16 37 H 0.12 0.95 5.92 -51.93 -0.31 0.64 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -28.87 348.46 -9.25 -38.12 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.41 Total: 5.88 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.36 Total: -18.87 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.05 Total: -39.11 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.65 Total: -7.44 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.87 -9.25 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.000 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds