Wall clock time and date at job start Tue Mar 31 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 H 1.09005 * 109.47248 * 185.21300 * 3 2 1 5 5 C 1.50703 * 109.47385 * 305.20958 * 3 2 1 6 6 H 1.08002 * 119.99726 * 119.99443 * 5 3 2 7 7 C 1.37881 * 120.00113 * 300.00386 * 5 3 2 8 8 N 1.31509 * 119.99872 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99737 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47382 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46941 * 119.99938 * 9 7 5 12 12 H 1.48503 * 109.47213 * 239.99907 * 9 7 5 13 13 N 1.46894 * 109.47479 * 65.21358 * 3 2 1 14 14 C 1.46904 * 111.00275 * 86.64451 * 13 3 2 15 15 C 1.50698 * 109.47475 * 183.01748 * 14 13 3 16 16 C 1.38269 * 119.94189 * 89.99996 * 15 14 13 17 17 C 1.38146 * 120.05237 * 180.02562 * 16 15 14 18 18 C 1.38734 * 119.94686 * 359.97438 * 17 16 15 19 19 O 1.35890 * 120.05820 * 180.02562 * 18 17 16 20 20 C 1.42908 * 117.00111 * 354.63793 * 19 18 17 21 21 C 1.53362 * 114.57004 * 201.69606 * 20 19 18 22 22 O 1.43345 * 88.49654 * 220.44492 * 21 20 19 23 23 C 1.43350 * 88.32547 * 28.12591 * 22 21 20 24 24 C 1.38729 * 119.88658 * 0.27899 * 18 17 16 25 25 C 1.38152 * 119.94498 * 359.42601 * 24 18 17 26 26 H 1.08996 * 109.46789 * 182.89879 * 1 2 3 27 27 H 1.09004 * 109.46473 * 302.88921 * 1 2 3 28 28 H 1.08993 * 109.47519 * 62.88896 * 1 2 3 29 29 H 1.08998 * 109.46844 * 240.00318 * 2 1 3 30 30 H 1.08998 * 109.47523 * 120.00152 * 2 1 3 31 31 H 0.97001 * 120.00051 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99836 * 322.69783 * 13 3 2 33 33 H 1.09002 * 109.46245 * 63.01929 * 14 13 3 34 34 H 1.08999 * 109.46891 * 303.02114 * 14 13 3 35 35 H 1.07998 * 119.97460 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.02313 * 179.97438 * 17 16 15 37 37 H 1.09003 * 113.56083 * 335.96876 * 20 19 18 38 38 H 1.08999 * 113.39360 * 105.51955 * 21 20 19 39 39 H 1.09001 * 113.38822 * 335.36526 * 21 20 19 40 40 H 1.08991 * 113.39244 * 86.74799 * 23 22 21 41 41 H 1.08997 * 113.39644 * 216.91354 * 23 22 21 42 42 H 1.08002 * 120.02992 * 179.71884 * 24 18 17 43 43 H 1.08000 * 119.97483 * 180.27536 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4440 -0.0934 5 6 1.4351 2.1892 -1.1609 6 1 0.8260 3.0631 -0.9824 7 6 1.6591 1.7567 -2.4508 8 7 2.4010 0.6929 -2.6681 9 14 0.9087 2.6819 -3.8896 10 1 0.1230 3.8349 -3.3811 11 1 1.9905 3.1748 -4.7795 12 1 0.0165 1.7721 -4.6521 13 7 1.6558 2.0977 1.2573 14 6 2.6542 1.8507 2.3063 15 6 2.1910 2.4742 3.5976 16 6 1.4203 1.7406 4.4807 17 6 0.9939 2.3101 5.6649 18 6 1.3401 3.6189 5.9681 19 8 0.9224 4.1811 7.1326 20 6 0.0332 3.4099 7.9431 21 6 -0.8032 4.2316 8.9317 22 8 -0.5907 3.2034 9.9077 23 6 0.6465 2.8955 9.2524 24 6 2.1090 4.3544 5.0780 25 6 2.5381 3.7784 3.8978 26 1 -0.3633 -1.0263 0.0520 27 1 -0.3632 0.5581 0.8630 28 1 -0.3634 0.4683 -0.9147 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.5583 0.3883 -3.5755 32 1 0.7384 1.8006 1.5543 33 1 3.6070 2.2906 2.0116 34 1 2.7773 0.7766 2.4449 35 1 1.1507 0.7219 4.2440 36 1 0.3916 1.7368 6.3541 37 1 -0.5307 2.6640 7.3830 38 1 -1.8463 4.3363 8.6335 39 1 -0.3449 5.1837 9.1993 40 1 1.4839 3.4984 9.6033 41 1 0.8739 1.8296 9.2357 42 1 2.3761 5.3749 5.3096 43 1 3.1404 4.3492 3.2066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:11 Heat of formation + Delta-G solvation = -35.812664 kcal Electronic energy + Delta-G solvation = -22639.070388 eV Core-core repulsion = 19264.361474 eV Total energy + Delta-G solvation = -3374.708914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.13197 -40.62158 -38.79615 -37.68617 -34.59660 -32.88500 -32.03554 -30.94974 -29.92264 -28.17770 -27.32459 -25.71368 -24.93045 -24.20362 -22.42337 -21.41252 -21.16130 -19.63015 -18.26372 -17.73681 -17.35614 -16.96284 -16.79853 -16.47653 -16.22618 -15.58696 -15.50775 -15.36934 -14.82689 -14.70565 -14.39273 -14.17025 -13.88145 -13.59619 -13.59189 -13.25961 -13.06033 -12.89711 -12.80898 -12.59869 -12.42582 -12.26185 -11.86925 -11.78092 -11.61612 -11.42728 -11.37815 -10.94651 -10.88161 -10.42158 -9.92330 -9.13862 -8.84570 -8.03950 -6.12209 0.41856 0.43719 1.42075 1.45279 1.56275 2.10093 2.46762 2.75578 2.82270 3.05427 3.24774 3.65880 3.80927 3.89089 3.98698 4.10613 4.16984 4.29228 4.30461 4.47567 4.51177 4.53682 4.55731 4.62438 4.68692 4.73812 4.80059 4.85469 4.85578 4.90989 5.12149 5.13058 5.31231 5.37055 5.38275 5.45035 5.69543 5.75995 5.78342 5.80499 5.87356 6.34197 6.40926 6.70504 6.87243 7.01088 7.55754 9.01312 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030555 B = 0.002741 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.158299 B =10211.554039 C =10354.348319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.220 3.780 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.681 5.681 14 C 0.104 3.896 15 C -0.117 4.117 16 C -0.080 4.080 17 C -0.204 4.204 18 C 0.114 3.886 19 O -0.305 6.305 20 C 0.004 3.996 21 C 0.037 3.963 22 O -0.378 6.378 23 C 0.014 3.986 24 C -0.155 4.155 25 C -0.068 4.068 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.027 0.973 31 H 0.258 0.742 32 H 0.332 0.668 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.131 0.869 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 3.681 21.810 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.313 5.313 14 C -0.025 4.025 15 C -0.118 4.118 16 C -0.098 4.098 17 C -0.222 4.222 18 C 0.069 3.931 19 O -0.219 6.219 20 C -0.052 4.052 21 C -0.040 4.040 22 O -0.298 6.298 23 C -0.063 4.063 24 C -0.173 4.173 25 C -0.087 4.087 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.160 0.840 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.669 4.283 21.806 22.523 hybrid contribution -0.184 -0.819 -1.118 1.398 sum -3.853 3.464 20.688 21.326 Atomic orbital electron populations 1.21443 0.95945 0.99321 1.00837 1.21946 0.96485 0.99943 0.99447 1.18976 0.93673 0.89516 0.86696 0.98389 1.21319 1.30181 1.11260 0.90849 0.93089 1.25578 0.96001 0.95915 1.00990 1.70013 1.40095 1.25162 1.20925 0.85626 0.78207 0.78841 0.79677 1.19430 1.21086 1.20769 1.60808 1.04539 1.62842 1.03089 1.20776 0.95922 0.96983 0.88841 1.19831 1.00766 0.95317 0.95871 1.21001 0.95716 1.00076 0.93047 1.21344 1.06018 0.94970 0.99879 1.19043 0.95704 0.92173 0.86175 1.86123 1.61296 1.44422 1.30010 1.25767 0.92295 0.96223 0.90963 1.24103 1.02233 0.93187 0.84456 1.89929 1.36618 1.51760 1.51468 1.24444 0.89048 1.03742 0.89045 1.20570 1.01879 1.01104 0.93780 1.20977 0.98078 0.94102 0.95526 0.93707 0.93272 0.94132 0.92025 0.95439 0.93241 0.84935 0.91992 0.95420 0.85076 0.83286 0.85418 0.86925 0.88259 0.88623 0.87590 0.84022 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.39 71.98 0.68 -4.15 16 2 C -0.14 -6.37 5.51 30.59 0.17 -6.20 16 3 C 0.22 10.84 2.33 44.17 0.10 10.94 16 4 H 0.00 -0.10 7.81 -2.38 -0.02 -0.12 16 5 C -0.50 -26.99 7.40 25.60 0.19 -26.80 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.72 5.26 84.66 0.45 1.16 16 8 N -0.92 -52.43 11.38 21.45 0.24 -52.18 16 9 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.68 -28.20 6.25 -499.46 -3.12 -31.32 16 14 C 0.10 3.63 5.60 85.56 0.48 4.11 16 15 C -0.12 -3.43 5.36 -19.85 -0.11 -3.54 16 16 C -0.08 -2.00 9.69 22.26 0.22 -1.78 16 17 C -0.20 -4.35 9.03 22.37 0.20 -4.14 16 18 C 0.11 2.57 6.68 22.51 0.15 2.72 16 19 O -0.30 -6.00 10.21 -92.32 -0.94 -6.94 16 20 C 0.00 0.06 4.23 30.87 0.13 0.19 16 21 C 0.04 0.47 8.59 63.85 0.55 1.02 16 22 O -0.38 -6.48 12.74 -148.98 -1.90 -8.38 16 23 C 0.01 0.19 8.60 63.88 0.55 0.74 16 24 C -0.15 -3.73 9.99 22.37 0.22 -3.50 16 25 C -0.07 -1.87 9.69 22.26 0.22 -1.65 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.80 6.34 -2.39 -0.02 1.79 16 28 H 0.04 1.85 7.15 -2.39 -0.02 1.83 16 29 H 0.06 3.24 6.23 -2.39 -0.01 3.23 16 30 H 0.03 1.14 7.43 -2.39 -0.02 1.12 16 31 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.33 13.01 6.46 -89.69 -0.58 12.43 16 33 H 0.06 2.26 8.06 -2.39 -0.02 2.24 16 34 H 0.03 0.96 7.37 -2.39 -0.02 0.94 16 35 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 36 H 0.15 2.34 5.88 -2.91 -0.02 2.32 16 37 H 0.13 1.63 5.92 -2.39 -0.01 1.61 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -61.73 348.46 0.93 -60.80 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.43 Total: 23.11 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 4.19 Total: -30.89 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -2.88 Total: -83.51 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -2.84 Total: -15.32 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -61.73 0.93 -60.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.988 kcal (2) G-P(sol) polarization free energy of solvation -61.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds