Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 H 1.08998 * 109.46995 * 305.13494 * 3 2 1 5 5 C 1.50702 * 109.47086 * 185.13788 * 3 2 1 6 6 H 1.08006 * 120.00101 * 239.99737 * 5 3 2 7 7 C 1.37878 * 120.00098 * 59.99929 * 5 3 2 8 8 N 1.31512 * 119.99796 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99840 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47212 * 90.00260 * 9 7 5 11 11 H 1.48508 * 109.46879 * 209.99885 * 9 7 5 12 12 H 1.48498 * 109.47419 * 329.99786 * 9 7 5 13 13 N 1.46898 * 109.47148 * 65.14061 * 3 2 1 14 14 C 1.46901 * 110.99757 * 208.82138 * 13 3 2 15 15 H 1.08995 * 109.47393 * 31.76312 * 14 13 3 16 16 C 1.53001 * 109.46943 * 271.75981 * 14 13 3 17 17 C 1.50703 * 109.47188 * 151.76097 * 14 13 3 18 18 C 1.38396 * 119.92446 * 39.72680 * 17 14 13 19 19 C 1.38346 * 120.30049 * 179.72471 * 18 17 14 20 20 C 1.37962 * 120.15044 * 0.54905 * 19 18 17 21 21 C 1.39612 * 119.84906 * 359.72364 * 20 19 18 22 22 C 1.47724 * 120.14786 * 180.02562 * 21 20 19 23 23 O 1.21474 * 119.99731 * 179.97438 * 22 21 20 24 24 O 1.34711 * 120.00045 * 359.97301 * 22 21 20 25 25 C 1.45200 * 116.99629 * 179.97438 * 24 22 21 26 26 C 1.37921 * 119.92624 * 220.00039 * 17 14 13 27 27 H 1.09005 * 109.47094 * 184.67398 * 1 2 3 28 28 H 1.08996 * 109.47509 * 304.66901 * 1 2 3 29 29 H 1.09000 * 109.47175 * 64.67061 * 1 2 3 30 30 H 1.09003 * 109.47224 * 239.99941 * 2 1 3 31 31 H 1.09003 * 109.47140 * 119.99523 * 2 1 3 32 32 H 0.96998 * 120.00048 * 179.97438 * 8 7 5 33 33 H 1.00899 * 111.00388 * 84.86690 * 13 3 2 34 34 H 1.09001 * 109.47044 * 300.00081 * 16 14 13 35 35 H 1.08996 * 109.47310 * 60.00487 * 16 14 13 36 36 H 1.09001 * 109.46881 * 180.02562 * 16 14 13 37 37 H 1.07998 * 119.84693 * 359.97438 * 18 17 14 38 38 H 1.08003 * 119.92002 * 180.25161 * 19 18 17 39 39 H 1.08000 * 120.07239 * 179.70620 * 20 19 18 40 40 H 1.09005 * 109.46728 * 180.02562 * 25 24 22 41 41 H 1.08998 * 109.47453 * 300.00604 * 25 24 22 42 42 H 1.09003 * 109.47107 * 60.01119 * 25 24 22 43 43 H 1.07999 * 120.07660 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6034 1.9822 -0.8404 5 6 3.5416 1.4444 -0.1272 6 1 4.1487 1.8884 0.6479 7 6 4.1405 0.8794 -1.2332 8 7 3.4012 0.3392 -2.1773 9 14 6.0018 0.8824 -1.3912 10 1 6.5531 -0.3495 -0.7718 11 1 6.3765 0.9246 -2.8276 12 1 6.5553 2.0744 -0.6999 13 7 1.6542 2.0982 1.2566 14 6 1.4868 3.5451 1.0656 15 1 1.1310 3.7393 0.0538 16 6 2.8301 4.2463 1.2773 17 6 0.4837 4.0704 2.0601 18 6 0.4840 3.5926 3.3589 19 6 -0.4296 4.0735 4.2798 20 6 -1.3553 5.0255 3.9053 21 6 -1.3648 5.5078 2.5952 22 6 -2.3527 6.5276 2.1872 23 8 -2.3582 6.9457 1.0467 24 8 -3.2473 6.9939 3.0800 25 6 -4.1875 7.9952 2.6093 26 6 -0.4361 5.0221 1.6723 27 1 -0.3633 -1.0243 0.0837 28 1 -0.3634 0.5845 0.8451 29 1 -0.3633 0.4397 -0.9289 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.8225 -0.0580 -2.9555 33 1 2.3242 1.9050 1.9859 34 1 3.1858 4.0521 2.2892 35 1 3.5556 3.8664 0.5580 36 1 2.7058 5.3199 1.1359 37 1 1.2033 2.8438 3.6560 38 1 -0.4213 3.6992 5.2929 39 1 -2.0710 5.3966 4.6240 40 1 -4.8494 8.2843 3.4258 41 1 -3.6409 8.8703 2.2580 42 1 -4.7781 7.5830 1.7911 43 1 -0.4384 5.3907 0.6571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = -70.784378 kcal Electronic energy + Delta-G solvation = -23157.910074 eV Core-core repulsion = 19781.684673 eV Total energy + Delta-G solvation = -3376.225402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58275 -39.05969 -36.67138 -36.39069 -33.69774 -31.63472 -31.21830 -30.27813 -28.18086 -27.75570 -26.11694 -24.15339 -23.15376 -22.48037 -21.42043 -19.97481 -19.51805 -17.56924 -17.15531 -16.53853 -16.43735 -15.92025 -15.16959 -14.80883 -14.53686 -13.98001 -13.69665 -13.56956 -13.50280 -13.28415 -12.70487 -12.68338 -12.36810 -12.30564 -11.93138 -11.85155 -11.43779 -11.36059 -11.11614 -11.03616 -10.95132 -10.83656 -10.69125 -10.50298 -10.44196 -10.14073 -9.59696 -9.51508 -9.05558 -8.91043 -8.56364 -8.39966 -7.34789 -6.02608 -4.14981 0.80255 1.49460 2.58490 2.59114 3.24705 3.32635 3.34021 3.90400 4.36602 4.66010 4.85997 4.91050 4.98826 5.00339 5.19061 5.23848 5.29049 5.40908 5.48690 5.62882 5.70915 5.92055 5.96849 6.05038 6.19098 6.26720 6.37040 6.39545 6.44282 6.52882 6.55864 6.71845 6.82168 6.86124 7.01861 7.12335 7.18546 7.42875 7.56610 7.67924 7.75842 8.06620 8.09022 8.29374 8.60346 8.96909 9.52354 10.97926 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.003456 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.180894 B = 8099.456073 C = 8193.137160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.127 3.873 15 H 0.081 0.919 16 C -0.174 4.174 17 C -0.062 4.062 18 C -0.058 4.058 19 C -0.138 4.138 20 C -0.075 4.075 21 C -0.134 4.134 22 C 0.510 3.490 23 O -0.508 6.508 24 O -0.357 6.357 25 C 0.037 3.963 26 C -0.054 4.054 27 H 0.024 0.976 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.330 0.670 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.090 10.178 11.918 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.310 5.310 14 C 0.016 3.984 15 H 0.099 0.901 16 C -0.233 4.233 17 C -0.063 4.063 18 C -0.076 4.076 19 C -0.156 4.156 20 C -0.094 4.094 21 C -0.135 4.135 22 C 0.356 3.644 23 O -0.397 6.397 24 O -0.274 6.274 25 C -0.057 4.057 26 C -0.072 4.072 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.147 0.853 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.786 10.083 11.295 18.590 hybrid contribution 1.832 0.373 -0.394 1.911 sum -8.954 10.456 10.901 17.560 Atomic orbital electron populations 1.21716 0.99066 0.98466 1.00374 1.21497 0.92043 0.99235 1.01620 1.19203 0.92995 0.91259 0.85622 0.94993 1.21878 0.92568 1.38278 1.05568 0.92477 1.24936 0.97787 0.95010 0.95795 1.69876 1.34785 1.38120 1.09367 0.86683 0.86195 0.78376 0.77237 1.20706 1.21275 1.20053 1.60933 1.52817 1.06029 1.11195 1.20375 0.91952 0.89896 0.96212 0.90057 1.22543 0.98654 0.99787 1.02267 1.20151 0.96216 0.94730 0.95216 1.21306 0.97113 0.96742 0.92437 1.21126 0.96335 0.98097 1.00003 1.21308 0.97836 0.95707 0.94530 1.18955 0.98417 1.00243 0.95905 1.21362 0.79614 0.80354 0.83090 1.90833 1.70894 1.57603 1.20360 1.86544 1.43431 1.54758 1.42665 1.23255 0.91177 0.90015 1.01271 1.21137 0.92188 0.94712 0.99189 0.95717 0.93143 0.94615 0.89204 0.95124 0.92868 0.85326 0.93305 0.89822 0.93683 0.85169 0.85535 0.85137 0.88114 0.91907 0.91844 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.85 37.15 0.37 -2.47 16 2 C -0.11 -2.45 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 5.05 1.99 -68.86 -0.14 4.92 16 4 H 0.03 0.84 7.32 -51.93 -0.38 0.46 16 5 C -0.54 -13.73 7.24 -34.44 -0.25 -13.98 16 6 H 0.06 1.41 6.82 -52.48 -0.36 1.05 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.31 11.29 55.43 0.63 -23.68 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.68 -13.09 4.82 -102.17 -0.49 -13.59 16 14 C 0.13 2.21 2.80 -68.86 -0.19 2.02 16 15 H 0.08 1.56 7.18 -51.93 -0.37 1.18 16 16 C -0.17 -2.90 8.84 37.16 0.33 -2.57 16 17 C -0.06 -0.95 4.95 -104.68 -0.52 -1.47 16 18 C -0.06 -0.78 9.32 -39.48 -0.37 -1.15 16 19 C -0.14 -1.59 10.03 -39.64 -0.40 -1.99 16 20 C -0.08 -0.90 9.62 -39.17 -0.38 -1.27 16 21 C -0.13 -1.87 5.87 -104.98 -0.62 -2.49 16 22 C 0.51 7.24 7.90 34.61 0.27 7.52 16 23 O -0.51 -8.44 16.14 -19.25 -0.31 -8.75 16 24 O -0.36 -4.17 9.82 -40.52 -0.40 -4.57 16 25 C 0.04 0.31 10.56 101.05 1.07 1.37 16 26 C -0.05 -0.81 9.21 -39.17 -0.36 -1.17 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 1.00 7.63 -51.93 -0.40 0.60 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 33 H 0.33 6.18 7.51 -39.29 -0.30 5.88 16 34 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 35 H 0.08 1.61 6.19 -51.93 -0.32 1.29 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.13 1.68 7.33 -52.49 -0.38 1.29 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.13 1.27 7.61 -52.49 -0.40 0.87 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.13 2.07 7.63 -52.49 -0.40 1.67 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -28.33 354.52 -8.23 -36.56 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.56 Total: 6.85 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.42 Total: -13.66 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.13 Total: -37.27 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.71 Total: -13.32 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.33 -8.23 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.219 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds