Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 H 1.08998 * 109.46995 * 305.13494 * 3 2 1 5 5 C 1.50702 * 109.47086 * 185.13788 * 3 2 1 6 6 H 1.08006 * 120.00101 * 239.99737 * 5 3 2 7 7 C 1.37878 * 120.00098 * 59.99929 * 5 3 2 8 8 N 1.31512 * 119.99796 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99840 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47212 * 90.00260 * 9 7 5 11 11 H 1.48508 * 109.46879 * 209.99885 * 9 7 5 12 12 H 1.48498 * 109.47419 * 329.99786 * 9 7 5 13 13 N 1.46898 * 109.47148 * 65.14061 * 3 2 1 14 14 C 1.46901 * 110.99757 * 208.82138 * 13 3 2 15 15 H 1.08995 * 109.47393 * 31.76312 * 14 13 3 16 16 C 1.53001 * 109.46943 * 271.75981 * 14 13 3 17 17 C 1.50703 * 109.47188 * 151.76097 * 14 13 3 18 18 C 1.38396 * 119.92446 * 39.72680 * 17 14 13 19 19 C 1.38346 * 120.30049 * 179.72471 * 18 17 14 20 20 C 1.37962 * 120.15044 * 0.54905 * 19 18 17 21 21 C 1.39612 * 119.84906 * 359.72364 * 20 19 18 22 22 C 1.47724 * 120.14786 * 180.02562 * 21 20 19 23 23 O 1.21474 * 119.99731 * 179.97438 * 22 21 20 24 24 O 1.34711 * 120.00045 * 359.97301 * 22 21 20 25 25 C 1.45200 * 116.99629 * 179.97438 * 24 22 21 26 26 C 1.37921 * 119.92624 * 220.00039 * 17 14 13 27 27 H 1.09005 * 109.47094 * 184.67398 * 1 2 3 28 28 H 1.08996 * 109.47509 * 304.66901 * 1 2 3 29 29 H 1.09000 * 109.47175 * 64.67061 * 1 2 3 30 30 H 1.09003 * 109.47224 * 239.99941 * 2 1 3 31 31 H 1.09003 * 109.47140 * 119.99523 * 2 1 3 32 32 H 0.96998 * 120.00048 * 179.97438 * 8 7 5 33 33 H 1.00899 * 111.00388 * 84.86690 * 13 3 2 34 34 H 1.09001 * 109.47044 * 300.00081 * 16 14 13 35 35 H 1.08996 * 109.47310 * 60.00487 * 16 14 13 36 36 H 1.09001 * 109.46881 * 180.02562 * 16 14 13 37 37 H 1.07998 * 119.84693 * 359.97438 * 18 17 14 38 38 H 1.08003 * 119.92002 * 180.25161 * 19 18 17 39 39 H 1.08000 * 120.07239 * 179.70620 * 20 19 18 40 40 H 1.09005 * 109.46728 * 180.02562 * 25 24 22 41 41 H 1.08998 * 109.47453 * 300.00604 * 25 24 22 42 42 H 1.09003 * 109.47107 * 60.01119 * 25 24 22 43 43 H 1.07999 * 120.07660 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6034 1.9822 -0.8404 5 6 3.5416 1.4444 -0.1272 6 1 4.1487 1.8884 0.6479 7 6 4.1405 0.8794 -1.2332 8 7 3.4012 0.3392 -2.1773 9 14 6.0018 0.8824 -1.3912 10 1 6.5531 -0.3495 -0.7718 11 1 6.3765 0.9246 -2.8276 12 1 6.5553 2.0744 -0.6999 13 7 1.6542 2.0982 1.2566 14 6 1.4868 3.5451 1.0656 15 1 1.1310 3.7393 0.0538 16 6 2.8301 4.2463 1.2773 17 6 0.4837 4.0704 2.0601 18 6 0.4840 3.5926 3.3589 19 6 -0.4296 4.0735 4.2798 20 6 -1.3553 5.0255 3.9053 21 6 -1.3648 5.5078 2.5952 22 6 -2.3527 6.5276 2.1872 23 8 -2.3582 6.9457 1.0467 24 8 -3.2473 6.9939 3.0800 25 6 -4.1875 7.9952 2.6093 26 6 -0.4361 5.0221 1.6723 27 1 -0.3633 -1.0243 0.0837 28 1 -0.3634 0.5845 0.8451 29 1 -0.3633 0.4397 -0.9289 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.8225 -0.0580 -2.9555 33 1 2.3242 1.9050 1.9859 34 1 3.1858 4.0521 2.2892 35 1 3.5556 3.8664 0.5580 36 1 2.7058 5.3199 1.1359 37 1 1.2033 2.8438 3.6560 38 1 -0.4213 3.6992 5.2929 39 1 -2.0710 5.3966 4.6240 40 1 -4.8494 8.2843 3.4258 41 1 -3.6409 8.8703 2.2580 42 1 -4.7781 7.5830 1.7911 43 1 -0.4384 5.3907 0.6571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = -85.559777 kcal Electronic energy + Delta-G solvation = -23158.550784 eV Core-core repulsion = 19781.684673 eV Total energy + Delta-G solvation = -3376.866111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62762 -40.19616 -38.17360 -37.48958 -35.33044 -33.50634 -32.25992 -31.63677 -29.60808 -28.59299 -27.95722 -25.19374 -24.74857 -23.96220 -22.52267 -21.37277 -21.12638 -18.79487 -18.40126 -18.14754 -17.40009 -16.99998 -16.79043 -16.17010 -15.96168 -15.24949 -15.21749 -14.74370 -14.52592 -14.52425 -14.25307 -14.07316 -13.82878 -13.43664 -13.21199 -13.17237 -13.05668 -12.88355 -12.72107 -12.53799 -12.45359 -12.25830 -12.01688 -11.83735 -11.80715 -11.60932 -11.47218 -11.26789 -10.91945 -10.41711 -9.95158 -9.69368 -9.02698 -8.01813 -6.21788 -0.26284 0.44618 1.40039 1.42464 1.49993 1.51634 1.66386 2.42618 2.84228 3.19047 3.58958 3.70717 3.98234 4.00817 4.22477 4.29049 4.32933 4.33728 4.40672 4.52603 4.59240 4.64338 4.69341 4.79276 4.80945 4.92890 4.98346 5.05518 5.09209 5.21670 5.23171 5.31739 5.39333 5.43797 5.51302 5.60235 5.63515 5.70770 5.82337 5.96659 6.14663 6.24264 6.42609 6.64669 6.85353 7.07925 7.49012 8.95513 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.003456 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.180894 B = 8099.456073 C = 8193.137160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C 0.225 3.775 4 H -0.006 1.006 5 C -0.546 4.546 6 H 0.061 0.939 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.130 3.870 15 H 0.052 0.948 16 C -0.165 4.165 17 C -0.075 4.075 18 C -0.060 4.060 19 C -0.125 4.125 20 C -0.061 4.061 21 C -0.146 4.146 22 C 0.511 3.489 23 O -0.543 6.543 24 O -0.352 6.352 25 C 0.028 3.972 26 C -0.069 4.069 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.259 0.741 33 H 0.336 0.664 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.139 0.861 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 10.642 15.160 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.117 3.883 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.079 0.921 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.773 3.227 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.298 5.298 14 C 0.019 3.981 15 H 0.070 0.930 16 C -0.224 4.224 17 C -0.076 4.076 18 C -0.079 4.079 19 C -0.142 4.142 20 C -0.079 4.079 21 C -0.147 4.147 22 C 0.359 3.641 23 O -0.435 6.435 24 O -0.268 6.268 25 C -0.065 4.065 26 C -0.088 4.088 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.182 0.818 39 H 0.177 0.823 40 H 0.157 0.843 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.401 10.562 14.573 21.305 hybrid contribution 1.921 0.310 -1.337 2.361 sum -9.480 10.873 13.236 19.577 Atomic orbital electron populations 1.21572 0.96897 0.99798 1.00097 1.21356 0.93959 0.98587 1.00109 1.18934 0.91908 0.91343 0.86154 0.98828 1.22204 0.93692 1.37271 1.05385 0.92051 1.25658 1.01664 0.95102 0.95794 1.70020 1.36250 1.39224 1.09846 0.85738 0.81599 0.78511 0.76837 1.20267 1.21663 1.19363 1.60839 1.52467 1.07138 1.09355 1.20259 0.93166 0.88883 0.95756 0.93009 1.22412 0.97332 1.00305 1.02312 1.19836 0.96277 0.95800 0.95664 1.21468 0.97847 0.96772 0.91771 1.21499 0.94685 0.96903 1.01145 1.21654 0.97833 0.94720 0.93735 1.19049 0.98259 1.00613 0.96768 1.21466 0.79797 0.80050 0.82826 1.90817 1.71944 1.58875 1.21856 1.86524 1.43211 1.55227 1.41874 1.23606 0.90877 0.89066 1.02923 1.21030 0.93280 0.95560 0.98962 0.93687 0.92307 0.95746 0.92297 0.94880 0.93156 0.84637 0.91470 0.92806 0.92471 0.84346 0.81754 0.82272 0.84283 0.91999 0.92162 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 9.85 71.98 0.71 -4.43 16 2 C -0.10 -4.78 5.45 30.59 0.17 -4.61 16 3 C 0.23 10.81 1.99 44.17 0.09 10.90 16 4 H -0.01 -0.35 7.32 -2.39 -0.02 -0.36 16 5 C -0.55 -28.06 7.24 25.60 0.19 -27.88 16 6 H 0.06 3.04 6.82 -2.91 -0.02 3.02 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -51.90 11.29 21.45 0.24 -51.66 16 9 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 N -0.67 -25.83 4.82 -477.16 -2.30 -28.13 16 14 C 0.13 4.64 2.80 44.17 0.12 4.77 16 15 H 0.05 2.13 7.18 -2.39 -0.02 2.11 16 16 C -0.16 -5.51 8.84 71.98 0.64 -4.88 16 17 C -0.08 -2.26 4.95 -19.90 -0.10 -2.36 16 18 C -0.06 -1.48 9.32 22.33 0.21 -1.27 16 19 C -0.12 -2.37 10.03 22.23 0.22 -2.14 16 20 C -0.06 -1.24 9.62 22.54 0.22 -1.03 16 21 C -0.15 -3.90 5.87 -20.10 -0.12 -4.01 16 22 C 0.51 14.14 7.90 70.33 0.56 14.70 16 23 O -0.54 -18.38 16.14 19.92 0.32 -18.06 16 24 O -0.35 -7.47 9.82 -56.20 -0.55 -8.03 16 25 C 0.03 0.41 10.56 113.37 1.20 1.61 16 26 C -0.07 -2.14 9.21 22.53 0.21 -1.93 16 27 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 2.28 7.63 -2.39 -0.02 2.26 16 29 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 3.17 5.95 -2.39 -0.01 3.15 16 31 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 33 H 0.34 12.30 7.51 -89.69 -0.67 11.62 16 34 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 35 H 0.05 2.11 6.19 -2.39 -0.01 2.10 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.14 3.15 7.33 -2.91 -0.02 3.12 16 38 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.16 2.33 7.61 -2.91 -0.02 2.31 16 40 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.11 3.84 7.63 -2.91 -0.02 3.82 16 Total: -1.00 -63.24 354.52 4.82 -58.43 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.33 Total: 24.01 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 4.75 Total: -21.19 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -2.06 Total: -79.79 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.23 Total: -26.09 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -63.24 4.82 -58.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.133 kcal (2) G-P(sol) polarization free energy of solvation -63.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds