Wall clock time and date at job start Tue Mar 31 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46927 * 2 1 4 4 H 1.09001 * 109.47317 * 54.32480 * 3 2 1 5 5 C 1.50704 * 109.46871 * 174.32071 * 3 2 1 6 6 H 1.07995 * 120.00257 * 119.99629 * 5 3 2 7 7 C 1.37878 * 119.99874 * 299.99861 * 5 3 2 8 8 N 1.31516 * 119.99892 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99898 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47478 * 90.00190 * 9 7 5 11 11 H 1.48503 * 109.46885 * 209.99506 * 9 7 5 12 12 H 1.48491 * 109.47440 * 329.99775 * 9 7 5 13 13 N 1.46893 * 109.47000 * 294.32103 * 3 2 1 14 14 C 1.46900 * 111.00161 * 155.61474 * 13 3 2 15 15 H 1.09006 * 109.46902 * 33.33887 * 14 13 3 16 16 C 1.52999 * 109.46751 * 273.34610 * 14 13 3 17 17 C 1.50700 * 109.47794 * 153.34152 * 14 13 3 18 18 C 1.38390 * 119.91830 * 39.72377 * 17 14 13 19 19 C 1.38347 * 120.29777 * 179.76648 * 18 17 14 20 20 C 1.37974 * 120.15253 * 0.51185 * 19 18 17 21 21 C 1.39612 * 119.84362 * 359.74421 * 20 19 18 22 22 C 1.47726 * 120.14710 * 180.02562 * 21 20 19 23 23 O 1.21465 * 119.99766 * 179.97438 * 22 21 20 24 24 O 1.34710 * 119.99948 * 359.97438 * 22 21 20 25 25 C 1.45195 * 116.99781 * 180.02562 * 24 22 21 26 26 C 1.37920 * 119.92538 * 219.99818 * 17 14 13 27 27 H 1.08999 * 109.47159 * 305.64542 * 1 2 3 28 28 H 1.09000 * 109.46866 * 65.64637 * 1 2 3 29 29 H 1.08997 * 109.47101 * 185.64989 * 1 2 3 30 30 H 1.08995 * 109.46706 * 239.99828 * 2 1 3 31 31 H 1.09000 * 109.46758 * 119.99797 * 2 1 3 32 32 H 0.97003 * 119.99581 * 180.02562 * 8 7 5 33 33 H 1.00900 * 111.00922 * 31.65706 * 13 3 2 34 34 H 1.09008 * 109.47103 * 304.91004 * 16 14 13 35 35 H 1.08993 * 109.47555 * 64.91401 * 16 14 13 36 36 H 1.09011 * 109.47231 * 184.92001 * 16 14 13 37 37 H 1.07996 * 119.85214 * 0.02562 * 18 17 14 38 38 H 1.08001 * 119.92846 * 180.25497 * 19 18 17 39 39 H 1.07992 * 120.07792 * 179.72705 * 20 19 18 40 40 H 1.09000 * 109.47356 * 179.97438 * 25 24 22 41 41 H 1.09003 * 109.47093 * 299.99480 * 25 24 22 42 42 H 1.08995 * 109.47855 * 59.99290 * 25 24 22 43 43 H 1.07992 * 120.08000 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9849 0.8348 5 6 3.5405 1.4448 0.1406 6 1 4.1545 1.8863 -0.6304 7 6 4.1295 0.8833 1.2537 8 7 5.4389 0.8849 1.3761 9 14 3.0675 0.1191 2.5869 10 1 2.8501 -1.3183 2.2835 11 1 3.7502 0.2501 3.8992 12 1 1.7582 0.8177 2.6382 13 7 1.6655 2.0943 -1.2620 14 6 1.5989 3.5530 -1.1018 15 1 2.3475 3.8734 -0.3771 16 6 0.2067 3.9484 -0.6055 17 6 1.8670 4.2169 -2.4278 18 6 1.3426 3.6764 -3.5889 19 6 1.5797 4.2822 -4.8098 20 6 2.3504 5.4246 -4.8787 21 6 2.8868 5.9721 -3.7118 22 6 3.7124 7.1954 -3.7777 23 8 4.1774 7.6697 -2.7607 24 8 3.9495 7.7848 -4.9656 25 6 4.7694 8.9831 -4.9548 26 6 2.6390 5.3585 -2.4821 27 1 -0.3633 0.5989 0.8351 28 1 -0.3633 0.4238 -0.9362 29 1 -0.3633 -1.0226 0.1012 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8532 0.4895 2.1590 33 1 0.7928 1.7289 -1.6127 34 1 -0.5475 3.5522 -1.2856 35 1 0.0469 3.5399 0.3922 36 1 0.1287 5.0352 -0.5700 37 1 0.7421 2.7801 -3.5411 38 1 1.1642 3.8576 -5.7118 39 1 2.5384 5.8940 -5.8329 40 1 4.8823 9.3553 -5.9731 41 1 4.2907 9.7454 -4.3400 42 1 5.7509 8.7482 -4.5433 43 1 3.0516 5.7765 -1.5758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:13 Heat of formation + Delta-G solvation = -58.909630 kcal Electronic energy + Delta-G solvation = -23249.557041 eV Core-core repulsion = 19873.846568 eV Total energy + Delta-G solvation = -3375.710474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52507 -39.08096 -36.97359 -36.37908 -33.89142 -31.97385 -31.19286 -30.32452 -28.55416 -27.75371 -26.68145 -24.12533 -23.32593 -22.43198 -21.37560 -20.15629 -19.72886 -17.55185 -17.10485 -16.70882 -16.36901 -15.91603 -15.34949 -15.07880 -14.58954 -14.10513 -13.97720 -13.53891 -13.51792 -13.28500 -13.12074 -12.89856 -12.65101 -12.26884 -12.17757 -12.06161 -11.97862 -11.70135 -11.43601 -11.14129 -11.00238 -10.88165 -10.70098 -10.46373 -10.36984 -10.24179 -10.05015 -9.44537 -9.21670 -8.87527 -8.58398 -8.50847 -7.44499 -6.02979 -4.00348 0.84656 1.52319 2.63309 2.65738 3.25156 3.35007 3.38101 3.92582 4.40534 4.71460 4.79128 4.97194 5.01736 5.05639 5.09934 5.23564 5.28540 5.35328 5.45521 5.56003 5.60801 5.67825 5.70212 5.80065 5.84012 5.92681 5.99864 6.14590 6.24617 6.27838 6.35376 6.41939 6.43898 6.53085 6.60920 6.67766 6.74269 6.87331 7.02664 7.16559 7.70714 7.74945 7.92182 8.21188 8.74574 9.10496 9.59525 11.10436 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.004056 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.861096 B = 6901.252925 C = 7783.673404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.191 3.809 4 H 0.003 0.997 5 C -0.497 4.497 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.899 5.899 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.666 5.666 14 C 0.122 3.878 15 H 0.099 0.901 16 C -0.174 4.174 17 C -0.061 4.061 18 C -0.059 4.059 19 C -0.138 4.138 20 C -0.074 4.074 21 C -0.132 4.132 22 C 0.510 3.490 23 O -0.505 6.505 24 O -0.358 6.358 25 C 0.037 3.963 26 C -0.048 4.048 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.263 0.737 33 H 0.319 0.681 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 9.957 -12.226 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.083 3.917 4 H 0.020 0.980 5 C -0.536 4.536 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.538 5.538 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.296 5.296 14 C 0.011 3.989 15 H 0.117 0.883 16 C -0.233 4.233 17 C -0.061 4.061 18 C -0.078 4.078 19 C -0.156 4.156 20 C -0.092 4.092 21 C -0.134 4.134 22 C 0.355 3.645 23 O -0.394 6.394 24 O -0.274 6.274 25 C -0.057 4.057 26 C -0.066 4.066 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.012 10.071 -12.047 18.105 hybrid contribution -1.030 -0.327 1.363 1.739 sum -10.042 9.744 -10.685 17.605 Atomic orbital electron populations 1.21916 0.98202 1.00575 1.00691 1.22119 0.92911 1.00437 1.01885 1.19636 0.96890 0.89217 0.85968 0.97962 1.21043 0.89109 1.37583 1.05852 0.90072 1.24962 0.94728 0.95989 0.97736 1.69893 1.08950 1.45732 1.29239 0.86961 0.80748 0.79769 0.81329 1.20633 1.22533 1.19309 1.60583 1.35634 1.01469 1.31956 1.20441 0.96422 0.89470 0.92530 0.88319 1.22503 0.97623 1.01705 1.01513 1.19934 0.96142 0.93862 0.96192 1.21238 0.96911 0.97977 0.91645 1.21096 1.00199 0.96230 0.98069 1.21315 0.95202 0.95379 0.97309 1.18959 1.03568 0.95487 0.95336 1.21337 0.78254 0.83695 0.81201 1.90841 1.48973 1.63936 1.35661 1.86536 1.65867 1.41222 1.33816 1.23251 0.94460 0.84508 1.03500 1.21154 0.94789 0.93965 0.96721 0.93571 0.93180 0.93639 0.91301 0.92778 0.92737 0.86246 0.92855 0.92176 0.92467 0.85455 0.85535 0.85080 0.88141 0.91937 0.91786 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.64 37.16 0.36 -2.17 16 2 C -0.14 -2.79 5.02 -26.73 -0.13 -2.92 16 3 C 0.19 4.27 1.44 -68.87 -0.10 4.17 16 4 H 0.00 0.07 6.34 -51.93 -0.33 -0.26 16 5 C -0.50 -13.78 9.05 -34.44 -0.31 -14.09 16 6 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 7 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 8 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 9 Si 0.88 21.67 24.41 -169.99 -4.15 17.52 16 10 H -0.28 -6.69 6.83 56.52 0.39 -6.31 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 12 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.67 -12.55 5.46 -102.17 -0.56 -13.11 16 14 C 0.12 2.09 2.59 -68.87 -0.18 1.92 16 15 H 0.10 1.98 7.45 -51.93 -0.39 1.59 16 16 C -0.17 -2.47 9.15 37.16 0.34 -2.13 16 17 C -0.06 -0.95 4.95 -104.68 -0.52 -1.47 16 18 C -0.06 -0.81 9.32 -39.49 -0.37 -1.17 16 19 C -0.14 -1.63 10.03 -39.64 -0.40 -2.03 16 20 C -0.07 -0.91 9.62 -39.17 -0.38 -1.29 16 21 C -0.13 -1.96 5.87 -104.98 -0.62 -2.57 16 22 C 0.51 7.69 7.90 34.61 0.27 7.96 16 23 O -0.51 -8.93 16.14 -19.24 -0.31 -9.24 16 24 O -0.36 -4.44 9.82 -40.52 -0.40 -4.83 16 25 C 0.04 0.33 10.56 101.05 1.07 1.40 16 26 C -0.05 -0.77 9.21 -39.17 -0.36 -1.13 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.70 6.65 -51.93 -0.35 0.35 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.05 1.21 3.21 -51.93 -0.17 1.04 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.32 5.17 5.67 -39.29 -0.22 4.94 16 34 H 0.05 0.66 8.04 -51.92 -0.42 0.24 16 35 H 0.06 0.89 7.60 -51.93 -0.39 0.50 16 36 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.13 1.57 7.28 -52.49 -0.38 1.19 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 1.34 7.61 -52.49 -0.40 0.94 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.14 2.27 7.63 -52.49 -0.40 1.87 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -32.13 348.94 -7.24 -39.37 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.43 Total: 5.59 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -1.42 Total: -13.70 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.22 Total: -39.97 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.71 Total: -14.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.15 Total: 17.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.13 -7.24 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.539 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds