Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46927 * 2 1 4 4 H 1.09001 * 109.47317 * 54.32480 * 3 2 1 5 5 C 1.50704 * 109.46871 * 174.32071 * 3 2 1 6 6 H 1.07995 * 120.00257 * 119.99629 * 5 3 2 7 7 C 1.37878 * 119.99874 * 299.99861 * 5 3 2 8 8 N 1.31516 * 119.99892 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99898 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47478 * 90.00190 * 9 7 5 11 11 H 1.48503 * 109.46885 * 209.99506 * 9 7 5 12 12 H 1.48491 * 109.47440 * 329.99775 * 9 7 5 13 13 N 1.46893 * 109.47000 * 294.32103 * 3 2 1 14 14 C 1.46900 * 111.00161 * 155.61474 * 13 3 2 15 15 H 1.09006 * 109.46902 * 33.33887 * 14 13 3 16 16 C 1.52999 * 109.46751 * 273.34610 * 14 13 3 17 17 C 1.50700 * 109.47794 * 153.34152 * 14 13 3 18 18 C 1.38390 * 119.91830 * 39.72377 * 17 14 13 19 19 C 1.38347 * 120.29777 * 179.76648 * 18 17 14 20 20 C 1.37974 * 120.15253 * 0.51185 * 19 18 17 21 21 C 1.39612 * 119.84362 * 359.74421 * 20 19 18 22 22 C 1.47726 * 120.14710 * 180.02562 * 21 20 19 23 23 O 1.21465 * 119.99766 * 179.97438 * 22 21 20 24 24 O 1.34710 * 119.99948 * 359.97438 * 22 21 20 25 25 C 1.45195 * 116.99781 * 180.02562 * 24 22 21 26 26 C 1.37920 * 119.92538 * 219.99818 * 17 14 13 27 27 H 1.08999 * 109.47159 * 305.64542 * 1 2 3 28 28 H 1.09000 * 109.46866 * 65.64637 * 1 2 3 29 29 H 1.08997 * 109.47101 * 185.64989 * 1 2 3 30 30 H 1.08995 * 109.46706 * 239.99828 * 2 1 3 31 31 H 1.09000 * 109.46758 * 119.99797 * 2 1 3 32 32 H 0.97003 * 119.99581 * 180.02562 * 8 7 5 33 33 H 1.00900 * 111.00922 * 31.65706 * 13 3 2 34 34 H 1.09008 * 109.47103 * 304.91004 * 16 14 13 35 35 H 1.08993 * 109.47555 * 64.91401 * 16 14 13 36 36 H 1.09011 * 109.47231 * 184.92001 * 16 14 13 37 37 H 1.07996 * 119.85214 * 0.02562 * 18 17 14 38 38 H 1.08001 * 119.92846 * 180.25497 * 19 18 17 39 39 H 1.07992 * 120.07792 * 179.72705 * 20 19 18 40 40 H 1.09000 * 109.47356 * 179.97438 * 25 24 22 41 41 H 1.09003 * 109.47093 * 299.99480 * 25 24 22 42 42 H 1.08995 * 109.47855 * 59.99290 * 25 24 22 43 43 H 1.07992 * 120.08000 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9849 0.8348 5 6 3.5405 1.4448 0.1406 6 1 4.1545 1.8863 -0.6304 7 6 4.1295 0.8833 1.2537 8 7 5.4389 0.8849 1.3761 9 14 3.0675 0.1191 2.5869 10 1 2.8501 -1.3183 2.2835 11 1 3.7502 0.2501 3.8992 12 1 1.7582 0.8177 2.6382 13 7 1.6655 2.0943 -1.2620 14 6 1.5989 3.5530 -1.1018 15 1 2.3475 3.8734 -0.3771 16 6 0.2067 3.9484 -0.6055 17 6 1.8670 4.2169 -2.4278 18 6 1.3426 3.6764 -3.5889 19 6 1.5797 4.2822 -4.8098 20 6 2.3504 5.4246 -4.8787 21 6 2.8868 5.9721 -3.7118 22 6 3.7124 7.1954 -3.7777 23 8 4.1774 7.6697 -2.7607 24 8 3.9495 7.7848 -4.9656 25 6 4.7694 8.9831 -4.9548 26 6 2.6390 5.3585 -2.4821 27 1 -0.3633 0.5989 0.8351 28 1 -0.3633 0.4238 -0.9362 29 1 -0.3633 -1.0226 0.1012 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8532 0.4895 2.1590 33 1 0.7928 1.7289 -1.6127 34 1 -0.5475 3.5522 -1.2856 35 1 0.0469 3.5399 0.3922 36 1 0.1287 5.0352 -0.5700 37 1 0.7421 2.7801 -3.5411 38 1 1.1642 3.8576 -5.7118 39 1 2.5384 5.8940 -5.8329 40 1 4.8823 9.3553 -5.9731 41 1 4.2907 9.7454 -4.3400 42 1 5.7509 8.7482 -4.5433 43 1 3.0516 5.7765 -1.5758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = -79.783902 kcal Electronic energy + Delta-G solvation = -23250.462218 eV Core-core repulsion = 19873.846568 eV Total energy + Delta-G solvation = -3376.615650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65283 -40.26221 -38.45451 -37.52094 -35.40603 -34.00219 -32.28153 -31.58309 -29.93053 -28.61930 -28.45481 -25.21315 -24.75893 -23.92594 -22.51666 -21.70587 -21.13208 -18.83325 -18.66896 -18.20757 -17.42511 -17.09865 -16.89800 -16.43202 -16.14443 -15.51375 -15.25208 -14.86488 -14.56317 -14.54656 -14.52610 -14.23418 -14.11454 -13.66048 -13.57396 -13.12932 -13.08027 -13.02171 -12.81730 -12.56398 -12.43867 -12.27030 -12.16435 -11.86050 -11.81135 -11.65861 -11.55672 -11.24148 -11.17246 -10.67349 -9.96760 -9.71273 -9.01837 -8.26143 -6.27825 -0.28213 0.42749 1.28357 1.33956 1.43997 1.49308 1.64246 2.31955 2.81493 3.07274 3.43919 3.68913 3.87091 3.97782 4.18730 4.24913 4.30403 4.30963 4.31513 4.37095 4.40425 4.45358 4.48355 4.55867 4.66328 4.75478 4.82262 4.91372 5.04553 5.06023 5.10934 5.14946 5.18854 5.22225 5.26347 5.33061 5.46880 5.51255 5.65128 5.75290 5.95699 6.10153 6.50819 6.62517 6.80038 7.01130 7.36806 8.91718 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.004056 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.861096 B = 6901.252925 C = 7783.673404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.199 3.801 4 H -0.003 1.003 5 C -0.498 4.498 6 H 0.027 0.973 7 C 0.004 3.996 8 N -0.955 5.955 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.304 1.304 12 H -0.245 1.245 13 N -0.670 5.670 14 C 0.123 3.877 15 H 0.051 0.949 16 C -0.164 4.164 17 C -0.077 4.077 18 C -0.060 4.060 19 C -0.125 4.125 20 C -0.062 4.062 21 C -0.148 4.148 22 C 0.510 3.490 23 O -0.544 6.544 24 O -0.351 6.351 25 C 0.028 3.972 26 C -0.073 4.073 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.340 0.660 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 9.276 -14.432 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.090 3.910 4 H 0.015 0.985 5 C -0.537 4.537 6 H 0.045 0.955 7 C -0.192 4.192 8 N -0.596 5.596 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.232 1.232 12 H -0.169 1.169 13 N -0.303 5.303 14 C 0.013 3.987 15 H 0.070 0.930 16 C -0.223 4.223 17 C -0.078 4.078 18 C -0.078 4.078 19 C -0.142 4.142 20 C -0.080 4.080 21 C -0.149 4.149 22 C 0.357 3.643 23 O -0.436 6.436 24 O -0.267 6.267 25 C -0.065 4.065 26 C -0.092 4.092 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.164 0.836 38 H 0.186 0.814 39 H 0.178 0.822 40 H 0.159 0.841 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.590 9.401 -14.301 21.246 hybrid contribution 0.175 0.013 1.868 1.876 sum -12.415 9.414 -12.433 19.934 Atomic orbital electron populations 1.21849 0.94062 1.02419 1.02250 1.21996 0.96561 0.97934 1.00844 1.19365 0.93093 0.91181 0.87396 0.98529 1.21348 0.92068 1.36034 1.04238 0.95477 1.25860 0.95913 0.96841 1.00547 1.70077 1.11328 1.47851 1.30379 0.85839 0.79523 0.79632 0.77290 1.18994 1.23205 1.16882 1.60362 1.37189 1.02391 1.30315 1.20313 0.97111 0.88494 0.92770 0.93039 1.22389 0.95982 1.02387 1.01534 1.19826 0.97461 0.94071 0.96414 1.21489 0.96607 0.98380 0.91343 1.21539 0.98713 0.95213 0.98759 1.21674 0.93838 0.95224 0.97293 1.19072 1.04292 0.95764 0.95740 1.21505 0.77667 0.83690 0.81422 1.90818 1.50638 1.65084 1.37084 1.86517 1.66004 1.42171 1.32048 1.23611 0.93557 0.83241 1.06088 1.21054 0.96199 0.95177 0.96755 0.93288 0.90667 0.91429 0.91758 0.94513 0.92825 0.83917 0.90042 0.92886 0.91660 0.83593 0.81361 0.82209 0.84092 0.91849 0.92448 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 9.64 71.98 0.69 -3.47 16 2 C -0.14 -5.30 5.02 30.60 0.15 -5.14 16 3 C 0.20 8.89 1.44 44.17 0.06 8.95 16 4 H 0.00 -0.13 6.34 -2.39 -0.02 -0.14 16 5 C -0.50 -28.97 9.05 25.60 0.23 -28.74 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 7 C 0.00 0.26 5.45 84.65 0.46 0.72 16 8 N -0.95 -61.83 13.96 21.45 0.30 -61.53 16 9 Si 0.95 45.45 24.41 68.60 1.67 47.13 16 10 H -0.26 -11.90 6.83 99.48 0.68 -11.22 16 11 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 12 H -0.25 -10.69 6.53 99.48 0.65 -10.04 16 13 N -0.67 -24.94 5.46 -477.16 -2.61 -27.55 16 14 C 0.12 4.33 2.59 44.17 0.11 4.45 16 15 H 0.05 2.26 7.45 -2.38 -0.02 2.24 16 16 C -0.16 -4.43 9.15 71.98 0.66 -3.78 16 17 C -0.08 -2.44 4.95 -19.90 -0.10 -2.54 16 18 C -0.06 -1.48 9.32 22.33 0.21 -1.27 16 19 C -0.12 -2.47 10.03 22.23 0.22 -2.25 16 20 C -0.06 -1.38 9.62 22.54 0.22 -1.16 16 21 C -0.15 -4.38 5.87 -20.10 -0.12 -4.50 16 22 C 0.51 15.72 7.90 70.33 0.56 16.28 16 23 O -0.54 -20.42 16.14 19.95 0.32 -20.10 16 24 O -0.35 -8.33 9.82 -56.20 -0.55 -8.89 16 25 C 0.03 0.47 10.56 113.37 1.20 1.67 16 26 C -0.07 -2.49 9.21 22.54 0.21 -2.28 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.72 6.65 -2.39 -0.02 1.70 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.04 1.56 3.21 -2.39 -0.01 1.56 16 32 H 0.26 15.98 8.31 -92.71 -0.77 15.20 16 33 H 0.34 10.05 5.67 -89.69 -0.51 9.55 16 34 H 0.08 1.74 8.04 -2.38 -0.02 1.72 16 35 H 0.05 1.50 7.60 -2.39 -0.02 1.48 16 36 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.15 3.02 7.28 -2.91 -0.02 3.00 16 38 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.16 2.62 7.61 -2.91 -0.02 2.59 16 40 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.11 4.14 7.63 -2.91 -0.02 4.12 16 Total: -1.00 -76.39 348.94 4.32 -72.06 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.41 Total: 21.94 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 4.77 Total: -23.06 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -2.31 Total: -89.07 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.23 Total: -28.99 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.13 kcal Total: -76.39 4.32 -72.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.720 kcal (2) G-P(sol) polarization free energy of solvation -76.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds