Wall clock time and date at job start Tue Mar 31 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46796 * 2 1 4 4 H 1.08997 * 109.47147 * 305.64725 * 3 2 1 5 5 C 1.50698 * 109.46616 * 185.64416 * 3 2 1 6 6 H 1.07998 * 120.00041 * 239.99712 * 5 3 2 7 7 C 1.37880 * 120.00007 * 60.00542 * 5 3 2 8 8 N 1.31513 * 120.00231 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99790 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47100 * 60.00043 * 9 7 5 11 11 H 1.48505 * 109.46818 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47372 * 299.99736 * 9 7 5 13 13 N 1.46901 * 109.47117 * 65.64755 * 3 2 1 14 14 C 1.46898 * 111.00091 * 204.87570 * 13 3 2 15 15 H 1.09002 * 109.46975 * 326.87642 * 14 13 3 16 16 C 1.53004 * 109.47056 * 86.87241 * 14 13 3 17 17 C 1.50696 * 109.47151 * 206.87387 * 14 13 3 18 18 C 1.38389 * 119.92501 * 319.99630 * 17 14 13 19 19 C 1.38347 * 120.30434 * 179.97438 * 18 17 14 20 20 C 1.37965 * 120.14834 * 0.02562 * 19 18 17 21 21 C 1.39613 * 119.84849 * 359.97438 * 20 19 18 22 22 C 1.47731 * 120.14968 * 180.02562 * 21 20 19 23 23 O 1.21468 * 119.99574 * 179.97438 * 22 21 20 24 24 O 1.34710 * 119.99838 * 359.97438 * 22 21 20 25 25 C 1.45196 * 116.99772 * 180.02562 * 24 22 21 26 26 C 1.37928 * 119.92303 * 139.73194 * 17 14 13 27 27 H 1.08997 * 109.47169 * 294.21251 * 1 2 3 28 28 H 1.09000 * 109.47261 * 54.21687 * 1 2 3 29 29 H 1.09002 * 109.46811 * 174.21543 * 1 2 3 30 30 H 1.08999 * 109.47262 * 119.99852 * 2 1 3 31 31 H 1.09001 * 109.46795 * 240.00258 * 2 1 3 32 32 H 0.96997 * 120.00485 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99756 * 328.83236 * 13 3 2 34 34 H 1.08992 * 109.47130 * 184.37394 * 16 14 13 35 35 H 1.09000 * 109.46905 * 304.37428 * 16 14 13 36 36 H 1.09002 * 109.46621 * 64.36634 * 16 14 13 37 37 H 1.07998 * 119.84637 * 359.97438 * 18 17 14 38 38 H 1.07997 * 119.92601 * 180.02562 * 19 18 17 39 39 H 1.08003 * 120.07918 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47293 * 300.00428 * 25 24 22 41 41 H 1.09002 * 109.47132 * 60.00022 * 25 24 22 42 42 H 1.09000 * 109.47252 * 180.02562 * 25 24 22 43 43 H 1.07995 * 120.07189 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8865 0.6315 7 6 4.1301 0.8831 -1.2524 8 7 3.3831 0.3449 -2.1915 9 14 5.9900 0.8866 -1.4259 10 1 6.5947 0.1482 -0.2881 11 1 6.3694 0.2268 -2.7011 12 1 6.4846 2.2867 -1.4262 13 7 1.6647 2.0946 1.2618 14 6 1.5869 3.5523 1.0983 15 1 2.3281 3.8761 0.3675 16 6 0.1885 3.9369 0.6109 17 6 1.8597 4.2214 2.4207 18 6 1.3424 3.6836 3.5862 19 6 1.5883 4.2911 4.8046 20 6 2.3515 5.4389 4.8651 21 6 2.8764 5.9868 3.6931 22 6 3.6949 7.2153 3.7503 23 8 4.1506 7.6894 2.7290 24 8 3.9359 7.8097 4.9349 25 6 4.7474 9.0135 4.9154 26 6 2.6288 5.3654 2.4673 27 1 -0.3633 0.4215 0.9372 28 1 -0.3634 0.6009 -0.8337 29 1 -0.3633 -1.0225 -0.1036 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.7978 -0.0506 -2.9740 33 1 0.7959 1.7235 1.6161 34 1 0.1539 5.0086 0.4153 35 1 -0.0392 3.3928 -0.3057 36 1 -0.5454 3.6832 1.3759 37 1 0.7440 2.7855 3.5444 38 1 1.1820 3.8659 5.7104 39 1 2.5431 5.9120 5.8169 40 1 5.7278 8.7841 4.4980 41 1 4.2594 9.7707 4.3017 42 1 4.8645 9.3893 5.9319 43 1 3.0357 5.7814 1.5575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:16 Heat of formation + Delta-G solvation = -68.201713 kcal Electronic energy + Delta-G solvation = -23203.590753 eV Core-core repulsion = 19827.477344 eV Total energy + Delta-G solvation = -3376.113409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54084 -39.04496 -36.74078 -36.37706 -33.73670 -31.71466 -31.18695 -30.13610 -28.35978 -27.76321 -26.11918 -24.11978 -23.38534 -22.47180 -21.37012 -19.96308 -19.55869 -17.51272 -17.10874 -16.39444 -16.20478 -15.90083 -15.22308 -14.88904 -14.47559 -14.07939 -13.80298 -13.54022 -13.51375 -13.31977 -12.83318 -12.74878 -12.54774 -12.27953 -11.96838 -11.90137 -11.68690 -11.41492 -11.15624 -10.96889 -10.90910 -10.83642 -10.65299 -10.48757 -10.44416 -9.94840 -9.72896 -9.63865 -9.11917 -8.87367 -8.53424 -8.34080 -7.28240 -5.96062 -4.00037 0.84179 1.53215 2.61981 2.63761 3.36468 3.39999 3.44570 3.93487 4.46482 4.70115 4.87299 4.94696 5.02570 5.03224 5.20663 5.30289 5.33484 5.38029 5.49362 5.60821 5.68295 5.76507 5.90246 6.03929 6.13001 6.14737 6.19921 6.23543 6.34576 6.38556 6.43646 6.46598 6.59815 6.81384 6.86662 7.03170 7.08268 7.16009 7.48347 7.72615 7.76942 7.92500 8.26239 8.38451 8.73081 9.08078 9.65288 11.09143 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.004363 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.062444 B = 6415.959067 C = 7676.752201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.122 3.878 15 H 0.094 0.906 16 C -0.173 4.173 17 C -0.059 4.059 18 C -0.059 4.059 19 C -0.138 4.138 20 C -0.075 4.075 21 C -0.134 4.134 22 C 0.510 3.490 23 O -0.507 6.507 24 O -0.357 6.357 25 C 0.037 3.963 26 C -0.050 4.050 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.260 0.740 33 H 0.317 0.683 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 10.807 13.383 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.308 5.308 14 C 0.011 3.989 15 H 0.113 0.887 16 C -0.232 4.232 17 C -0.060 4.060 18 C -0.077 4.077 19 C -0.156 4.156 20 C -0.093 4.093 21 C -0.135 4.135 22 C 0.356 3.644 23 O -0.396 6.396 24 O -0.274 6.274 25 C -0.057 4.057 26 C -0.069 4.069 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.220 10.879 13.133 17.568 hybrid contribution 0.390 0.189 -0.706 0.828 sum -3.830 11.068 12.427 17.076 Atomic orbital electron populations 1.21883 0.99617 0.99723 0.99468 1.21772 0.91179 1.00364 1.03128 1.19170 0.95406 0.89903 0.84149 0.97769 1.21182 0.91280 1.36616 1.04229 0.92116 1.24931 0.97993 0.95606 0.95838 1.69853 1.34744 1.39457 1.09584 0.86638 0.85917 0.78215 0.77102 1.20333 1.21471 1.20389 1.60790 1.35772 1.00944 1.33312 1.20421 0.96198 0.90168 0.92070 0.88745 1.22483 0.97675 1.01568 1.01499 1.20031 0.95818 0.93749 0.96415 1.21265 0.96815 0.98045 0.91606 1.21101 1.00182 0.96172 0.98129 1.21304 0.95402 0.95398 0.97223 1.18961 1.03834 0.95313 0.95380 1.21357 0.78092 0.83786 0.81215 1.90836 1.49211 1.64246 1.35267 1.86540 1.66217 1.40745 1.33925 1.23250 0.94578 0.84368 1.03523 1.21159 0.95041 0.93996 0.96680 0.94672 0.93883 0.94422 0.94051 0.88215 0.93043 0.86459 0.92765 0.91934 0.93026 0.85383 0.85547 0.85126 0.91841 0.91920 0.88133 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.64 37.16 0.36 -2.39 16 2 C -0.13 -2.86 5.36 -26.73 -0.14 -3.00 16 3 C 0.22 5.24 1.83 -68.86 -0.13 5.11 16 4 H 0.00 0.12 7.24 -51.93 -0.38 -0.25 16 5 C -0.49 -13.40 8.50 -34.44 -0.29 -13.69 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.18 11.29 55.43 0.63 -24.55 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.68 -13.37 5.47 -102.17 -0.56 -13.93 16 14 C 0.12 2.17 2.58 -68.87 -0.18 2.00 16 15 H 0.09 1.94 7.47 -51.93 -0.39 1.55 16 16 C -0.17 -2.63 9.13 37.16 0.34 -2.29 16 17 C -0.06 -0.95 4.95 -104.68 -0.52 -1.47 16 18 C -0.06 -0.82 9.32 -39.49 -0.37 -1.19 16 19 C -0.14 -1.65 10.03 -39.64 -0.40 -2.05 16 20 C -0.07 -0.93 9.62 -39.17 -0.38 -1.31 16 21 C -0.13 -1.97 5.87 -104.98 -0.62 -2.58 16 22 C 0.51 7.60 7.90 34.61 0.27 7.88 16 23 O -0.51 -8.83 16.14 -19.24 -0.31 -9.14 16 24 O -0.36 -4.38 9.82 -40.52 -0.40 -4.78 16 25 C 0.04 0.33 10.56 101.05 1.07 1.39 16 26 C -0.05 -0.80 9.21 -39.17 -0.36 -1.17 16 27 H 0.03 0.57 6.66 -51.93 -0.35 0.22 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.32 5.61 5.75 -39.29 -0.23 5.38 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.13 1.66 7.29 -52.49 -0.38 1.27 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.33 7.61 -52.48 -0.40 0.93 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.13 2.24 7.62 -52.49 -0.40 1.84 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -29.93 355.78 -8.30 -38.23 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.57 Total: 5.47 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.43 Total: -13.30 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.07 Total: -38.48 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.71 Total: -13.93 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.93 -8.30 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.969 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds