Wall clock time and date at job start Tue Mar 31 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46796 * 2 1 4 4 H 1.08997 * 109.47147 * 305.64725 * 3 2 1 5 5 C 1.50698 * 109.46616 * 185.64416 * 3 2 1 6 6 H 1.07998 * 120.00041 * 239.99712 * 5 3 2 7 7 C 1.37880 * 120.00007 * 60.00542 * 5 3 2 8 8 N 1.31513 * 120.00231 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99790 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47100 * 60.00043 * 9 7 5 11 11 H 1.48505 * 109.46818 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47372 * 299.99736 * 9 7 5 13 13 N 1.46901 * 109.47117 * 65.64755 * 3 2 1 14 14 C 1.46898 * 111.00091 * 204.87570 * 13 3 2 15 15 H 1.09002 * 109.46975 * 326.87642 * 14 13 3 16 16 C 1.53004 * 109.47056 * 86.87241 * 14 13 3 17 17 C 1.50696 * 109.47151 * 206.87387 * 14 13 3 18 18 C 1.38389 * 119.92501 * 319.99630 * 17 14 13 19 19 C 1.38347 * 120.30434 * 179.97438 * 18 17 14 20 20 C 1.37965 * 120.14834 * 0.02562 * 19 18 17 21 21 C 1.39613 * 119.84849 * 359.97438 * 20 19 18 22 22 C 1.47731 * 120.14968 * 180.02562 * 21 20 19 23 23 O 1.21468 * 119.99574 * 179.97438 * 22 21 20 24 24 O 1.34710 * 119.99838 * 359.97438 * 22 21 20 25 25 C 1.45196 * 116.99772 * 180.02562 * 24 22 21 26 26 C 1.37928 * 119.92303 * 139.73194 * 17 14 13 27 27 H 1.08997 * 109.47169 * 294.21251 * 1 2 3 28 28 H 1.09000 * 109.47261 * 54.21687 * 1 2 3 29 29 H 1.09002 * 109.46811 * 174.21543 * 1 2 3 30 30 H 1.08999 * 109.47262 * 119.99852 * 2 1 3 31 31 H 1.09001 * 109.46795 * 240.00258 * 2 1 3 32 32 H 0.96997 * 120.00485 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99756 * 328.83236 * 13 3 2 34 34 H 1.08992 * 109.47130 * 184.37394 * 16 14 13 35 35 H 1.09000 * 109.46905 * 304.37428 * 16 14 13 36 36 H 1.09002 * 109.46621 * 64.36634 * 16 14 13 37 37 H 1.07998 * 119.84637 * 359.97438 * 18 17 14 38 38 H 1.07997 * 119.92601 * 180.02562 * 19 18 17 39 39 H 1.08003 * 120.07918 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47293 * 300.00428 * 25 24 22 41 41 H 1.09002 * 109.47132 * 60.00022 * 25 24 22 42 42 H 1.09000 * 109.47252 * 180.02562 * 25 24 22 43 43 H 1.07995 * 120.07189 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8865 0.6315 7 6 4.1301 0.8831 -1.2524 8 7 3.3831 0.3449 -2.1915 9 14 5.9900 0.8866 -1.4259 10 1 6.5947 0.1482 -0.2881 11 1 6.3694 0.2268 -2.7011 12 1 6.4846 2.2867 -1.4262 13 7 1.6647 2.0946 1.2618 14 6 1.5869 3.5523 1.0983 15 1 2.3281 3.8761 0.3675 16 6 0.1885 3.9369 0.6109 17 6 1.8597 4.2214 2.4207 18 6 1.3424 3.6836 3.5862 19 6 1.5883 4.2911 4.8046 20 6 2.3515 5.4389 4.8651 21 6 2.8764 5.9868 3.6931 22 6 3.6949 7.2153 3.7503 23 8 4.1506 7.6894 2.7290 24 8 3.9359 7.8097 4.9349 25 6 4.7474 9.0135 4.9154 26 6 2.6288 5.3654 2.4673 27 1 -0.3633 0.4215 0.9372 28 1 -0.3634 0.6009 -0.8337 29 1 -0.3633 -1.0225 -0.1036 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.7978 -0.0506 -2.9740 33 1 0.7959 1.7235 1.6161 34 1 0.1539 5.0086 0.4153 35 1 -0.0392 3.3928 -0.3057 36 1 -0.5454 3.6832 1.3759 37 1 0.7440 2.7855 3.5444 38 1 1.1820 3.8659 5.7104 39 1 2.5431 5.9120 5.8169 40 1 5.7278 8.7841 4.4980 41 1 4.2594 9.7707 4.3017 42 1 4.8645 9.3893 5.9319 43 1 3.0357 5.7814 1.5575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:15 Heat of formation + Delta-G solvation = -84.895754 kcal Electronic energy + Delta-G solvation = -23204.314661 eV Core-core repulsion = 19827.477344 eV Total energy + Delta-G solvation = -3376.837317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64381 -40.22398 -38.27008 -37.50901 -35.37640 -33.61363 -32.27190 -31.47066 -29.80158 -28.60758 -27.99543 -25.20912 -24.95586 -23.94605 -22.50855 -21.43491 -21.11817 -18.66287 -18.28400 -18.18922 -17.41721 -17.04363 -16.81328 -16.23240 -16.12089 -15.39602 -15.26469 -14.75510 -14.55315 -14.53514 -14.29512 -14.15111 -14.04890 -13.47274 -13.20010 -13.11387 -13.04380 -12.97191 -12.77563 -12.57469 -12.54134 -12.23726 -11.98403 -11.87147 -11.85391 -11.62730 -11.49875 -11.32764 -11.02553 -10.42185 -9.96138 -9.69801 -8.96992 -8.06482 -6.17316 -0.27559 0.43814 1.39470 1.39884 1.47767 1.50075 1.64795 2.42854 2.82859 3.18687 3.55862 3.69569 3.93396 3.99320 4.20742 4.26824 4.31317 4.32188 4.39734 4.46682 4.54605 4.56832 4.62177 4.66919 4.74488 4.76922 4.91543 5.02284 5.05873 5.13378 5.19847 5.22005 5.29724 5.34145 5.41472 5.50212 5.61104 5.68971 5.79328 5.94249 5.96146 6.38708 6.52744 6.63228 6.96518 7.05719 7.51550 8.95870 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.004363 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.062444 B = 6415.959067 C = 7676.752201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.230 3.770 4 H -0.026 1.026 5 C -0.511 4.511 6 H 0.043 0.957 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.946 3.054 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.675 5.675 14 C 0.125 3.875 15 H 0.052 0.948 16 C -0.163 4.163 17 C -0.075 4.075 18 C -0.061 4.061 19 C -0.124 4.124 20 C -0.062 4.062 21 C -0.147 4.147 22 C 0.511 3.489 23 O -0.544 6.544 24 O -0.352 6.352 25 C 0.028 3.972 26 C -0.071 4.071 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.260 0.740 33 H 0.333 0.667 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.140 0.860 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 10.947 16.521 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.122 3.878 4 H -0.009 1.009 5 C -0.550 4.550 6 H 0.062 0.938 7 C -0.184 4.184 8 N -0.557 5.557 9 Si 0.773 3.227 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.306 5.306 14 C 0.014 3.986 15 H 0.070 0.930 16 C -0.222 4.222 17 C -0.076 4.076 18 C -0.079 4.079 19 C -0.142 4.142 20 C -0.080 4.080 21 C -0.148 4.148 22 C 0.358 3.642 23 O -0.436 6.436 24 O -0.268 6.268 25 C -0.065 4.065 26 C -0.090 4.090 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.160 0.840 38 H 0.185 0.815 39 H 0.178 0.822 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.158 0.842 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.245 11.028 16.301 20.368 hybrid contribution 0.729 0.235 -1.588 1.764 sum -4.516 11.263 14.712 19.071 Atomic orbital electron populations 1.21747 0.96040 1.01075 1.00686 1.21585 0.94378 0.98820 1.01181 1.18878 0.93440 0.90676 0.84849 1.00892 1.21455 0.93253 1.36335 1.03913 0.93827 1.25566 1.01615 0.95527 0.95731 1.69970 1.35974 1.39936 1.09815 0.85803 0.81697 0.77915 0.77328 1.19865 1.20675 1.20702 1.60629 1.36855 1.02031 1.31121 1.20284 0.96605 0.88988 0.92696 0.92995 1.22364 0.96514 1.01938 1.01401 1.19823 0.97405 0.94134 0.96212 1.21471 0.96588 0.98393 0.91462 1.21517 0.98736 0.95245 0.98681 1.21664 0.93882 0.95124 0.97294 1.19063 1.04457 0.95565 0.95698 1.21482 0.77510 0.83753 0.81442 1.90817 1.50794 1.65321 1.36641 1.86521 1.66348 1.41710 1.32188 1.23610 0.93750 0.83063 1.06064 1.21047 0.96205 0.94924 0.96842 0.91922 0.94527 0.92616 0.94419 0.91632 0.93105 0.84790 0.91846 0.93518 0.90401 0.84038 0.81490 0.82179 0.92339 0.91906 0.84168 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.64 71.98 0.69 -4.19 16 2 C -0.12 -5.54 5.36 30.60 0.16 -5.37 16 3 C 0.23 11.24 1.83 44.17 0.08 11.32 16 4 H -0.03 -1.44 7.24 -2.39 -0.02 -1.46 16 5 C -0.51 -28.73 8.50 25.60 0.22 -28.51 16 6 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 7 C 0.01 0.79 5.29 84.66 0.45 1.23 16 8 N -0.92 -52.99 11.29 21.45 0.24 -52.75 16 9 Si 0.95 45.47 29.54 68.60 2.03 47.50 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 N -0.67 -26.77 5.47 -477.16 -2.61 -29.37 16 14 C 0.12 4.57 2.58 44.17 0.11 4.69 16 15 H 0.05 2.31 7.47 -2.39 -0.02 2.29 16 16 C -0.16 -4.95 9.13 71.98 0.66 -4.29 16 17 C -0.08 -2.39 4.95 -19.90 -0.10 -2.49 16 18 C -0.06 -1.54 9.32 22.33 0.21 -1.33 16 19 C -0.12 -2.46 10.03 22.23 0.22 -2.24 16 20 C -0.06 -1.33 9.62 22.54 0.22 -1.11 16 21 C -0.15 -4.21 5.87 -20.10 -0.12 -4.33 16 22 C 0.51 15.12 7.90 70.33 0.56 15.67 16 23 O -0.54 -19.61 16.14 19.94 0.32 -19.29 16 24 O -0.35 -7.98 9.82 -56.20 -0.55 -8.53 16 25 C 0.03 0.45 10.56 113.37 1.20 1.65 16 26 C -0.07 -2.37 9.21 22.54 0.21 -2.16 16 27 H 0.06 1.86 6.66 -2.39 -0.02 1.84 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 3.47 5.94 -2.39 -0.01 3.46 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.64 16 33 H 0.33 11.25 5.75 -89.69 -0.52 10.73 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.55 7.53 -2.39 -0.02 1.53 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.14 3.16 7.29 -2.91 -0.02 3.14 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.16 2.52 7.61 -2.91 -0.02 2.49 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.11 4.08 7.62 -2.91 -0.02 4.06 16 Total: -1.00 -68.25 355.78 4.68 -63.57 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.48 Total: 20.35 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 4.77 Total: -21.47 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.37 Total: -82.13 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.23 Total: -27.82 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.25 4.68 -63.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.325 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds