Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.46893 * 2 1 4 4 C 1.34711 * 116.99704 * 180.02562 * 3 2 1 5 5 O 1.21465 * 120.00160 * 359.97438 * 4 3 2 6 6 C 1.47733 * 119.99800 * 180.02562 * 4 3 2 7 7 C 1.39628 * 120.14607 * 179.97438 * 6 4 3 8 8 C 1.37946 * 119.84508 * 180.02562 * 7 6 4 9 9 C 1.38372 * 120.15107 * 0.02562 * 8 7 6 10 10 C 1.50691 * 119.84760 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47232 * 90.00173 * 10 9 8 12 12 C 1.46902 * 110.99920 * 184.82360 * 11 10 9 13 13 H 1.08999 * 109.47414 * 320.80347 * 12 11 10 14 14 C 1.50709 * 109.46988 * 200.80690 * 12 11 10 15 15 H 1.07995 * 119.99931 * 355.35581 * 14 12 11 16 16 C 1.37876 * 119.99636 * 175.36660 * 14 12 11 17 17 N 1.31512 * 120.00683 * 354.18406 * 16 14 12 18 18 Si 1.86805 * 119.99680 * 174.19013 * 16 14 12 19 19 H 1.48504 * 109.46971 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.46735 * 299.99415 * 18 16 14 21 21 H 1.48499 * 109.47413 * 59.99225 * 18 16 14 22 22 C 1.53000 * 109.47214 * 80.80597 * 12 11 10 23 23 C 1.53004 * 109.46996 * 63.89700 * 22 12 11 24 24 C 1.38371 * 120.29901 * 0.23524 * 9 8 7 25 25 C 1.37944 * 120.15092 * 359.48993 * 24 9 8 26 26 H 1.09002 * 109.46812 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46945 * 299.99721 * 1 2 3 28 28 H 1.08993 * 109.47342 * 59.99988 * 1 2 3 29 29 H 1.09003 * 109.46532 * 239.99954 * 2 1 3 30 30 H 1.08993 * 109.47342 * 120.00012 * 2 1 3 31 31 H 1.07994 * 120.07754 * 359.97438 * 7 6 4 32 32 H 1.08001 * 119.92710 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.47518 * 330.00014 * 10 9 8 34 34 H 1.09009 * 109.47271 * 210.00047 * 10 9 8 35 35 H 1.00894 * 111.00403 * 308.77588 * 11 10 9 36 36 H 0.97002 * 119.99241 * 354.16788 * 17 16 14 37 37 H 1.08998 * 109.46870 * 183.89298 * 22 12 11 38 38 H 1.08994 * 109.47016 * 303.90066 * 22 12 11 39 39 H 1.08994 * 109.47288 * 64.87341 * 23 22 12 40 40 H 1.09004 * 109.46951 * 184.87214 * 23 22 12 41 41 H 1.09001 * 109.46960 * 304.86944 * 23 22 12 42 42 H 1.08000 * 119.92084 * 179.72621 * 24 9 8 43 43 H 1.08002 * 120.07148 * 180.25662 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0894 0.5822 -0.0005 6 6 3.9141 2.9106 0.0000 7 6 5.2979 3.0971 0.0000 8 6 5.8184 4.3746 0.0010 9 6 4.9726 5.4697 0.0026 10 6 5.5486 6.8622 0.0043 11 7 5.7355 7.3165 -1.3801 12 6 6.4016 8.6253 -1.4193 13 1 6.0181 9.2524 -0.6145 14 6 6.1297 9.2878 -2.7453 15 1 5.5865 8.7568 -3.5130 16 6 6.5747 10.5718 -2.9785 17 7 7.1347 11.2601 -2.0079 18 14 6.3819 11.3338 -4.6731 19 1 6.9354 12.7118 -4.6621 20 1 7.1146 10.5135 -5.6709 21 1 4.9421 11.3820 -5.0333 22 6 7.9096 8.4355 -1.2436 23 6 8.4641 7.6370 -2.4251 24 6 3.6003 5.2920 0.0081 25 6 3.0664 4.0201 0.0014 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.9591 2.2432 0.0000 32 1 6.8885 4.5204 0.0014 33 1 6.5099 6.8572 0.5179 34 1 4.8651 7.5375 0.5192 35 1 6.2474 6.6340 -1.9187 36 1 7.1588 10.8984 -1.1082 37 1 8.3961 9.4100 -1.2034 38 1 8.1022 7.8945 -0.3172 39 1 8.3492 8.2163 -3.3411 40 1 9.5207 7.4272 -2.2579 41 1 7.9176 6.6984 -2.5178 42 1 2.9459 6.1510 0.0138 43 1 1.9952 3.8828 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = -75.186976 kcal Electronic energy + Delta-G solvation = -22473.894001 eV Core-core repulsion = 19097.477689 eV Total energy + Delta-G solvation = -3376.416313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70651 -39.11832 -36.93144 -36.59905 -33.51196 -32.14328 -31.41496 -31.01708 -29.99150 -26.75785 -24.97035 -23.66057 -23.55139 -22.61953 -22.19678 -20.67215 -19.55673 -18.19388 -17.19168 -16.87383 -16.76398 -15.58854 -15.23394 -14.78865 -14.48338 -14.37761 -13.97099 -13.68123 -13.60682 -13.39343 -13.26064 -13.05022 -12.80401 -12.42161 -12.27914 -12.17286 -11.91686 -11.76860 -11.29223 -11.13525 -11.04308 -10.81168 -10.78484 -10.62931 -10.29745 -10.11994 -10.06380 -9.89484 -9.03772 -8.91732 -8.62313 -8.30918 -7.40937 -6.31628 -4.01683 0.62473 1.34725 2.42268 2.44033 3.45744 3.46535 3.65293 3.72918 4.44971 4.53383 4.59929 4.65576 4.76887 4.89269 4.90795 4.93059 5.21976 5.32108 5.36959 5.39307 5.41204 5.43103 5.62067 5.71966 5.78312 6.00106 6.03603 6.06939 6.10486 6.12893 6.21512 6.28912 6.33847 6.62359 6.64960 6.81913 6.92966 7.00335 7.22524 7.25381 7.57881 7.83866 8.20420 8.38209 8.60903 8.89799 9.65977 11.04009 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026688 B = 0.002797 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.901090 B =10007.790800 C =10453.641210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.514 3.486 5 O -0.513 6.513 6 C -0.141 4.141 7 C -0.053 4.053 8 C -0.130 4.130 9 C -0.028 4.028 10 C 0.085 3.915 11 N -0.669 5.669 12 C 0.204 3.796 13 H 0.027 0.973 14 C -0.570 4.570 15 H 0.055 0.945 16 C 0.019 3.981 17 N -0.915 5.915 18 Si 1.064 2.936 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.288 1.288 22 C -0.153 4.153 23 C -0.128 4.128 24 C -0.113 4.113 25 C -0.061 4.061 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.331 0.669 36 H 0.268 0.732 37 H 0.070 0.930 38 H 0.020 0.980 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.035 0.965 42 H 0.135 0.865 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 -18.398 5.822 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.360 3.640 5 O -0.402 6.402 6 C -0.142 4.142 7 C -0.072 4.072 8 C -0.149 4.149 9 C -0.029 4.029 10 C -0.044 4.044 11 N -0.300 5.300 12 C 0.096 3.904 13 H 0.045 0.955 14 C -0.609 4.609 15 H 0.073 0.927 16 C -0.184 4.184 17 N -0.553 5.553 18 Si 0.893 3.107 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.193 4.193 23 C -0.186 4.186 24 C -0.132 4.132 25 C -0.080 4.080 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.150 0.850 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.938 -17.079 4.870 19.882 hybrid contribution 0.623 -1.832 1.176 2.264 sum -8.316 -18.911 6.046 21.525 Atomic orbital electron populations 1.21813 0.92494 1.02993 1.03693 1.23033 0.95408 0.80055 1.02639 1.86553 1.23952 1.32343 1.84271 1.21261 0.80439 0.89999 0.72345 1.90811 1.60419 1.42594 1.46424 1.19014 0.94104 0.89649 1.11475 1.21168 0.93154 0.97795 0.95043 1.21064 1.00267 0.91496 1.02024 1.20406 0.93743 0.95835 0.92925 1.21066 0.98826 0.90821 0.93717 1.60946 1.55692 1.05860 1.07540 1.19355 0.87245 0.85516 0.98332 0.95514 1.21811 1.38846 1.00825 0.99436 0.92664 1.25698 0.93817 0.94035 1.04893 1.70805 1.41981 1.40664 1.01811 0.83612 0.76310 0.76171 0.74621 1.20988 1.21543 1.21501 1.22231 1.01757 1.00238 0.95094 1.21547 0.97203 0.99103 1.00714 1.21110 0.94880 0.97019 1.00170 1.21431 0.99974 0.91563 0.94991 0.90205 0.91400 0.91319 0.91163 0.91221 0.84813 0.85241 0.94811 0.90490 0.85039 0.92069 0.91167 0.96110 0.91325 0.95425 0.94593 0.84759 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.35 -4.03 9.47 -40.52 -0.38 -4.41 16 4 C 0.51 6.81 7.90 34.61 0.27 7.08 16 5 O -0.51 -7.79 16.14 -19.24 -0.31 -8.10 16 6 C -0.14 -1.84 5.87 -104.98 -0.62 -2.45 16 7 C -0.05 -0.69 9.60 -39.17 -0.38 -1.06 16 8 C -0.13 -1.71 9.68 -39.64 -0.38 -2.09 16 9 C -0.03 -0.41 5.35 -104.53 -0.56 -0.97 16 10 C 0.08 1.40 5.63 -4.98 -0.03 1.38 16 11 N -0.67 -13.46 6.24 -109.22 -0.68 -14.14 16 12 C 0.20 4.80 1.95 -68.86 -0.13 4.67 16 13 H 0.03 0.69 7.31 -51.93 -0.38 0.31 16 14 C -0.57 -15.22 7.43 -34.44 -0.26 -15.47 16 15 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 16 C 0.02 0.52 5.27 -17.82 -0.09 0.43 16 17 N -0.92 -26.44 12.88 55.43 0.71 -25.72 16 18 Si 1.06 24.67 29.91 -169.99 -5.08 19.59 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.15 -3.37 5.46 -26.73 -0.15 -3.52 16 23 C -0.13 -2.59 9.38 37.16 0.35 -2.25 16 24 C -0.11 -1.49 9.68 -39.64 -0.38 -1.88 16 25 C -0.06 -0.75 9.62 -39.17 -0.38 -1.12 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.13 1.60 7.65 -52.49 -0.40 1.20 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.03 0.55 6.94 -51.93 -0.36 0.19 16 34 H 0.08 1.28 8.08 -51.92 -0.42 0.86 16 35 H 0.33 6.47 6.43 -39.30 -0.25 6.22 16 36 H 0.27 7.68 6.04 -40.82 -0.25 7.43 16 37 H 0.07 1.72 6.27 -51.93 -0.33 1.40 16 38 H 0.02 0.41 7.04 -51.93 -0.37 0.04 16 39 H 0.07 1.54 7.30 -51.93 -0.38 1.16 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.66 6.24 -51.93 -0.32 0.34 16 42 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.14 1.38 7.61 -52.49 -0.40 0.98 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -30.00 354.94 -8.96 -38.96 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.44 Total: 5.50 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.12 Total: -17.02 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.03 Total: -39.87 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.69 Total: -12.52 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.00 -8.96 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.226 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds