Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.46893 * 2 1 4 4 C 1.34711 * 116.99704 * 180.02562 * 3 2 1 5 5 O 1.21465 * 120.00160 * 359.97438 * 4 3 2 6 6 C 1.47733 * 119.99800 * 180.02562 * 4 3 2 7 7 C 1.39628 * 120.14607 * 179.97438 * 6 4 3 8 8 C 1.37946 * 119.84508 * 180.02562 * 7 6 4 9 9 C 1.38372 * 120.15107 * 0.02562 * 8 7 6 10 10 C 1.50691 * 119.84760 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47232 * 90.00173 * 10 9 8 12 12 C 1.46902 * 110.99920 * 184.82360 * 11 10 9 13 13 H 1.08999 * 109.47414 * 320.80347 * 12 11 10 14 14 C 1.50709 * 109.46988 * 200.80690 * 12 11 10 15 15 H 1.07995 * 119.99931 * 355.35581 * 14 12 11 16 16 C 1.37876 * 119.99636 * 175.36660 * 14 12 11 17 17 N 1.31512 * 120.00683 * 354.18406 * 16 14 12 18 18 Si 1.86805 * 119.99680 * 174.19013 * 16 14 12 19 19 H 1.48504 * 109.46971 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.46735 * 299.99415 * 18 16 14 21 21 H 1.48499 * 109.47413 * 59.99225 * 18 16 14 22 22 C 1.53000 * 109.47214 * 80.80597 * 12 11 10 23 23 C 1.53004 * 109.46996 * 63.89700 * 22 12 11 24 24 C 1.38371 * 120.29901 * 0.23524 * 9 8 7 25 25 C 1.37944 * 120.15092 * 359.48993 * 24 9 8 26 26 H 1.09002 * 109.46812 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46945 * 299.99721 * 1 2 3 28 28 H 1.08993 * 109.47342 * 59.99988 * 1 2 3 29 29 H 1.09003 * 109.46532 * 239.99954 * 2 1 3 30 30 H 1.08993 * 109.47342 * 120.00012 * 2 1 3 31 31 H 1.07994 * 120.07754 * 359.97438 * 7 6 4 32 32 H 1.08001 * 119.92710 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.47518 * 330.00014 * 10 9 8 34 34 H 1.09009 * 109.47271 * 210.00047 * 10 9 8 35 35 H 1.00894 * 111.00403 * 308.77588 * 11 10 9 36 36 H 0.97002 * 119.99241 * 354.16788 * 17 16 14 37 37 H 1.08998 * 109.46870 * 183.89298 * 22 12 11 38 38 H 1.08994 * 109.47016 * 303.90066 * 22 12 11 39 39 H 1.08994 * 109.47288 * 64.87341 * 23 22 12 40 40 H 1.09004 * 109.46951 * 184.87214 * 23 22 12 41 41 H 1.09001 * 109.46960 * 304.86944 * 23 22 12 42 42 H 1.08000 * 119.92084 * 179.72621 * 24 9 8 43 43 H 1.08002 * 120.07148 * 180.25662 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0894 0.5822 -0.0005 6 6 3.9141 2.9106 0.0000 7 6 5.2979 3.0971 0.0000 8 6 5.8184 4.3746 0.0010 9 6 4.9726 5.4697 0.0026 10 6 5.5486 6.8622 0.0043 11 7 5.7355 7.3165 -1.3801 12 6 6.4016 8.6253 -1.4193 13 1 6.0181 9.2524 -0.6145 14 6 6.1297 9.2878 -2.7453 15 1 5.5865 8.7568 -3.5130 16 6 6.5747 10.5718 -2.9785 17 7 7.1347 11.2601 -2.0079 18 14 6.3819 11.3338 -4.6731 19 1 6.9354 12.7118 -4.6621 20 1 7.1146 10.5135 -5.6709 21 1 4.9421 11.3820 -5.0333 22 6 7.9096 8.4355 -1.2436 23 6 8.4641 7.6370 -2.4251 24 6 3.6003 5.2920 0.0081 25 6 3.0664 4.0201 0.0014 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.9591 2.2432 0.0000 32 1 6.8885 4.5204 0.0014 33 1 6.5099 6.8572 0.5179 34 1 4.8651 7.5375 0.5192 35 1 6.2474 6.6340 -1.9187 36 1 7.1588 10.8984 -1.1082 37 1 8.3961 9.4100 -1.2034 38 1 8.1022 7.8945 -0.3172 39 1 8.3492 8.2163 -3.3411 40 1 9.5207 7.4272 -2.2579 41 1 7.9176 6.6984 -2.5178 42 1 2.9459 6.1510 0.0138 43 1 1.9952 3.8828 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = -91.200011 kcal Electronic energy + Delta-G solvation = -22474.588379 eV Core-core repulsion = 19097.477689 eV Total energy + Delta-G solvation = -3377.110690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69055 -40.19540 -38.48232 -37.68213 -35.08396 -33.34369 -32.63375 -32.00446 -31.39265 -28.32950 -26.49490 -25.43673 -24.53804 -23.60985 -23.19924 -21.72556 -21.36966 -19.17400 -18.84096 -18.09886 -17.62997 -17.01938 -16.38554 -16.09756 -15.73500 -15.52215 -15.25408 -15.22092 -15.10882 -14.55327 -14.39016 -14.19474 -13.91920 -13.66356 -13.55036 -13.26637 -13.10833 -12.91224 -12.62233 -12.56267 -12.52192 -12.12469 -12.00832 -11.90854 -11.86646 -11.67916 -11.61991 -11.56669 -10.61287 -10.38823 -10.03729 -9.98890 -9.04701 -8.47639 -6.18121 -0.42296 0.34691 1.40044 1.55717 1.57634 1.63738 1.82693 2.61004 2.69926 3.27687 3.49409 3.65783 3.75213 3.91576 3.94793 3.99722 4.05952 4.21339 4.32712 4.33313 4.35270 4.37229 4.52830 4.60752 4.66159 4.74946 4.82772 4.92061 4.95657 5.01200 5.08236 5.12192 5.19819 5.23347 5.25631 5.39119 5.43840 5.53595 5.56841 5.79212 5.97640 6.22569 6.55259 6.60151 6.72870 6.80313 7.56635 8.88120 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026688 B = 0.002797 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.901090 B =10007.790800 C =10453.641210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.516 3.484 5 O -0.537 6.537 6 C -0.147 4.147 7 C -0.055 4.055 8 C -0.128 4.128 9 C -0.041 4.041 10 C 0.091 3.909 11 N -0.674 5.674 12 C 0.208 3.792 13 H -0.002 1.002 14 C -0.574 4.574 15 H 0.044 0.956 16 C -0.027 4.027 17 N -0.940 5.940 18 Si 1.105 2.895 19 H -0.289 1.289 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.146 4.146 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.053 4.053 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.335 0.665 36 H 0.258 0.742 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.140 0.860 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 -20.090 5.505 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.363 3.637 5 O -0.429 6.429 6 C -0.149 4.149 7 C -0.074 4.074 8 C -0.146 4.146 9 C -0.042 4.042 10 C -0.038 4.038 11 N -0.306 5.306 12 C 0.099 3.901 13 H 0.016 0.984 14 C -0.613 4.613 15 H 0.063 0.937 16 C -0.225 4.225 17 N -0.579 5.579 18 Si 0.929 3.071 19 H -0.215 1.215 20 H -0.199 1.199 21 H -0.202 1.202 22 C -0.186 4.186 23 C -0.179 4.179 24 C -0.136 4.136 25 C -0.071 4.071 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.154 0.846 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.158 0.842 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.766 -18.798 4.561 21.669 hybrid contribution 0.788 -1.417 1.335 2.100 sum -8.978 -20.215 5.896 22.891 Atomic orbital electron populations 1.21836 0.90232 1.04499 1.03796 1.23355 0.97156 0.78733 1.02766 1.86550 1.22783 1.34102 1.83684 1.21295 0.80948 0.89725 0.71759 1.90798 1.61087 1.43280 1.47712 1.19186 0.94433 0.89960 1.11285 1.21283 0.93390 0.97913 0.94777 1.21151 1.00788 0.91173 1.01480 1.20235 0.94403 0.94713 0.94805 1.20992 0.99122 0.92154 0.91537 1.60776 1.55140 1.04649 1.10033 1.19118 0.88499 0.86739 0.95789 0.98431 1.22073 1.37971 1.00902 1.00365 0.93748 1.26890 0.93388 0.94964 1.07242 1.70906 1.43910 1.41223 1.01820 0.83070 0.77055 0.75375 0.71622 1.21473 1.19864 1.20191 1.22085 1.00165 0.99281 0.97032 1.21463 0.98958 0.98998 0.98448 1.21223 0.94594 0.97744 1.00016 1.21580 1.00932 0.90725 0.93880 0.88000 0.91151 0.91311 0.91212 0.91016 0.84048 0.84067 0.94353 0.91044 0.84560 0.93169 0.94194 0.93969 0.93932 0.93027 0.92841 0.84227 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 71.98 0.74 -0.66 16 2 C 0.05 0.83 6.19 71.98 0.45 1.27 16 3 O -0.35 -7.47 9.47 -56.20 -0.53 -8.00 16 4 C 0.52 12.95 7.90 70.33 0.56 13.51 16 5 O -0.54 -15.78 16.14 19.95 0.32 -15.45 16 6 C -0.15 -3.59 5.87 -20.10 -0.12 -3.71 16 7 C -0.06 -1.34 9.60 22.54 0.22 -1.12 16 8 C -0.13 -3.13 9.68 22.23 0.22 -2.91 16 9 C -0.04 -1.12 5.35 -19.80 -0.11 -1.22 16 10 C 0.09 2.93 5.63 85.55 0.48 3.41 16 11 N -0.67 -26.75 6.24 -499.45 -3.12 -29.87 16 12 C 0.21 9.87 1.95 44.17 0.09 9.96 16 13 H 0.00 -0.12 7.31 -2.39 -0.02 -0.13 16 14 C -0.57 -30.90 7.43 25.60 0.19 -30.71 16 15 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 16 C -0.03 -1.48 5.27 84.65 0.45 -1.04 16 17 N -0.94 -55.40 12.88 21.45 0.28 -55.12 16 18 Si 1.11 49.67 29.91 68.60 2.05 51.73 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 22 C -0.15 -6.37 5.46 30.60 0.17 -6.21 16 23 C -0.12 -4.75 9.38 71.98 0.68 -4.07 16 24 C -0.12 -2.92 9.68 22.23 0.22 -2.70 16 25 C -0.05 -1.19 9.62 22.53 0.22 -0.97 16 26 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.14 3.17 7.65 -2.91 -0.02 3.14 16 32 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.04 1.21 6.94 -2.39 -0.02 1.19 16 34 H 0.07 2.37 8.08 -2.38 -0.02 2.35 16 35 H 0.33 12.67 6.43 -89.70 -0.58 12.10 16 36 H 0.26 15.29 6.04 -92.71 -0.56 14.73 16 37 H 0.04 1.98 6.27 -2.39 -0.01 1.97 16 38 H 0.04 1.63 7.04 -2.39 -0.02 1.62 16 39 H 0.04 1.87 7.30 -2.39 -0.02 1.85 16 40 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.05 1.88 6.24 -2.39 -0.01 1.86 16 42 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.16 2.79 7.61 -2.91 -0.02 2.77 16 Total: -1.00 -64.37 354.94 4.06 -60.31 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.64 Total: 23.58 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.43 Total: -27.16 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.84 Total: -84.99 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.21 Total: -23.46 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.05 Total: 51.73 kcal Total: -64.37 4.06 -60.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.894 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds