Wall clock time and date at job start Tue Mar 31 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.47096 * 2 1 4 4 C 1.34712 * 117.00040 * 180.02562 * 3 2 1 5 5 O 1.21471 * 119.99923 * 359.97438 * 4 3 2 6 6 C 1.47731 * 120.00092 * 180.02562 * 4 3 2 7 7 C 1.39632 * 120.14694 * 0.26969 * 6 4 3 8 8 C 1.37940 * 119.84566 * 180.23283 * 7 6 4 9 9 C 1.38364 * 120.15071 * 359.49896 * 8 7 6 10 10 C 1.50702 * 119.84834 * 180.27570 * 9 8 7 11 11 N 1.46907 * 109.47010 * 90.00156 * 10 9 8 12 12 C 1.46895 * 110.99779 * 176.25954 * 11 10 9 13 13 H 1.08999 * 109.47531 * 35.73892 * 12 11 10 14 14 C 1.50706 * 109.47106 * 155.73759 * 12 11 10 15 15 H 1.07997 * 119.99646 * 0.02562 * 14 12 11 16 16 C 1.37876 * 119.99977 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99962 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99826 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47548 * 90.00046 * 18 16 14 20 20 H 1.48502 * 109.46702 * 209.99831 * 18 16 14 21 21 H 1.48498 * 109.47013 * 329.99512 * 18 16 14 22 22 C 1.52996 * 109.47187 * 275.74008 * 12 11 10 23 23 C 1.53008 * 109.46959 * 294.08661 * 22 12 11 24 24 C 1.38369 * 120.30399 * 0.24808 * 9 8 7 25 25 C 1.37946 * 120.14596 * 0.02562 * 24 9 8 26 26 H 1.09003 * 109.46843 * 299.99455 * 1 2 3 27 27 H 1.09001 * 109.47323 * 59.99531 * 1 2 3 28 28 H 1.08998 * 109.46540 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47254 * 240.00892 * 2 1 3 30 30 H 1.09000 * 109.47759 * 120.00167 * 2 1 3 31 31 H 1.08002 * 120.07610 * 0.02562 * 7 6 4 32 32 H 1.08000 * 119.92482 * 179.77341 * 8 7 6 33 33 H 1.09000 * 109.46979 * 209.99305 * 10 9 8 34 34 H 1.08998 * 109.47062 * 329.99731 * 10 9 8 35 35 H 1.00893 * 111.00351 * 52.30404 * 11 10 9 36 36 H 0.97004 * 119.99580 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47535 * 54.08829 * 22 12 11 38 38 H 1.09001 * 109.47127 * 174.09106 * 22 12 11 39 39 H 1.09001 * 109.46786 * 178.55599 * 23 22 12 40 40 H 1.08995 * 109.46875 * 298.55735 * 23 22 12 41 41 H 1.09001 * 109.46604 * 58.55825 * 23 22 12 42 42 H 1.07997 * 119.92641 * 180.02562 * 24 9 8 43 43 H 1.08002 * 120.07423 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0895 0.5822 -0.0005 6 6 3.9142 2.9106 0.0000 7 6 3.0665 4.0202 0.0067 8 6 3.6004 5.2920 0.0023 9 6 4.9725 5.4698 0.0017 10 6 5.5485 6.8624 0.0032 11 7 5.7365 7.3130 1.3887 12 6 6.3794 8.6332 1.4302 13 1 6.0248 9.2365 0.5945 14 6 6.0346 9.3193 2.7270 15 1 5.4015 8.8240 3.4482 16 6 6.5272 10.5794 2.9924 17 7 7.2985 11.1824 2.1142 18 14 6.1004 11.4296 4.6000 19 1 7.1171 11.0866 5.6266 20 1 6.0826 12.8999 4.3928 21 1 4.7621 10.9781 5.0586 22 6 7.8968 8.4649 1.3300 23 6 8.4136 7.7456 2.5776 24 6 5.8184 4.3747 0.0004 25 6 5.2978 3.0972 -0.0009 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8935 -0.5138 0.8899 31 1 1.9952 3.8828 0.0120 32 1 2.9458 6.1511 0.0039 33 1 6.5095 6.8586 -0.5111 34 1 4.8646 7.5389 -0.5093 35 1 6.2641 6.6371 1.9204 36 1 7.6454 12.0688 2.3012 37 1 8.1395 7.8770 0.4449 38 1 8.3669 9.4455 1.2551 39 1 9.4910 7.6029 2.4945 40 1 8.1936 8.3458 3.4604 41 1 7.9244 6.7756 2.6665 42 1 6.8885 4.5205 0.0003 43 1 5.9591 2.2433 -0.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:00 Heat of formation + Delta-G solvation = -72.594346 kcal Electronic energy + Delta-G solvation = -22430.504895 eV Core-core repulsion = 19054.201007 eV Total energy + Delta-G solvation = -3376.303888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66470 -39.04852 -36.80382 -36.40883 -33.33720 -32.10509 -31.40277 -30.96074 -29.86348 -26.87599 -25.24334 -23.66711 -23.23552 -22.56294 -22.15257 -20.61573 -19.32689 -18.14792 -17.12409 -16.73247 -16.37439 -15.32656 -15.17969 -14.79001 -14.64218 -14.41084 -14.16606 -13.65647 -13.49400 -13.26694 -13.05161 -12.99205 -12.55779 -12.41187 -12.19423 -12.05646 -11.89325 -11.68389 -11.41220 -10.98815 -10.92726 -10.78359 -10.72803 -10.57008 -10.53814 -10.01755 -9.87599 -9.59324 -9.03124 -8.97786 -8.79942 -8.37080 -7.29089 -5.99905 -4.01479 0.68062 1.40616 2.45869 2.48760 3.31346 3.38456 3.42842 3.78872 4.43270 4.49247 4.62189 4.68246 4.82917 4.95258 4.96314 4.97828 5.27614 5.32109 5.38620 5.45252 5.45535 5.52561 5.64388 5.78702 5.87448 6.08205 6.13450 6.18741 6.26784 6.31479 6.33918 6.39349 6.53644 6.71027 6.85479 6.88830 7.21874 7.23913 7.47297 7.61661 7.65930 7.85746 8.23348 8.46731 8.56616 9.04045 9.62291 11.07178 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.002797 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.425724 B =10008.138118 C =10510.848702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.514 3.486 5 O -0.514 6.514 6 C -0.142 4.142 7 C -0.062 4.062 8 C -0.114 4.114 9 C -0.027 4.027 10 C 0.087 3.913 11 N -0.677 5.677 12 C 0.215 3.785 13 H 0.034 0.966 14 C -0.489 4.489 15 H 0.062 0.938 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.146 4.146 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.054 4.054 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.329 0.671 36 H 0.259 0.741 37 H 0.011 0.989 38 H 0.093 0.907 39 H 0.022 0.978 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.130 0.870 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 -17.510 -6.119 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.360 3.640 5 O -0.403 6.403 6 C -0.144 4.144 7 C -0.080 4.080 8 C -0.132 4.132 9 C -0.027 4.027 10 C -0.043 4.043 11 N -0.308 5.308 12 C 0.107 3.893 13 H 0.052 0.948 14 C -0.528 4.528 15 H 0.080 0.920 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.186 4.186 23 C -0.185 4.185 24 C -0.149 4.149 25 C -0.072 4.072 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.147 0.853 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.111 0.889 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.148 0.852 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.116 -17.377 -6.086 20.545 hybrid contribution 0.859 0.110 0.615 1.062 sum -8.256 -17.267 -5.471 19.906 Atomic orbital electron populations 1.21812 0.92521 1.02967 1.03686 1.23029 0.95386 0.80101 1.02620 1.86555 1.23994 1.32292 1.84292 1.21281 0.80407 0.90034 0.72313 1.90811 1.60419 1.42614 1.46482 1.19003 0.94118 0.89596 1.11664 1.21427 0.99920 0.91605 0.95064 1.21111 0.94936 0.96973 1.00195 1.20453 0.93698 0.95999 0.92585 1.21044 0.98815 0.90622 0.93775 1.60989 1.55911 1.06118 1.07772 1.19244 0.87987 0.84111 0.97928 0.94768 1.21039 1.29201 1.00120 1.02401 0.91998 1.24908 0.95326 0.97264 0.96850 1.69884 1.34256 1.14617 1.34820 0.86564 0.78849 0.78554 0.83853 1.20862 1.21432 1.19886 1.22116 1.01296 1.01320 0.93836 1.21571 0.97014 0.98983 1.00982 1.21071 1.00309 0.91473 1.02011 1.21164 0.93126 0.97816 0.95092 0.91328 0.91402 0.90233 0.91238 0.91183 0.84744 0.84741 0.94830 0.90439 0.85311 0.93099 0.97048 0.88877 0.95858 0.91489 0.95181 0.85208 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.35 -4.07 9.47 -40.53 -0.38 -4.45 16 4 C 0.51 6.87 7.90 34.61 0.27 7.14 16 5 O -0.51 -7.87 16.14 -19.24 -0.31 -8.18 16 6 C -0.14 -1.87 5.87 -104.98 -0.62 -2.49 16 7 C -0.06 -0.76 9.62 -39.17 -0.38 -1.13 16 8 C -0.11 -1.50 9.68 -39.64 -0.38 -1.89 16 9 C -0.03 -0.38 5.36 -104.53 -0.56 -0.94 16 10 C 0.09 1.44 5.60 -4.97 -0.03 1.41 16 11 N -0.68 -13.56 6.24 -109.22 -0.68 -14.25 16 12 C 0.21 5.09 2.33 -68.87 -0.16 4.93 16 13 H 0.03 0.90 7.86 -51.93 -0.41 0.49 16 14 C -0.49 -12.87 7.35 -34.44 -0.25 -13.12 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.53 5.23 -17.82 -0.09 1.43 16 17 N -0.90 -24.76 11.39 55.43 0.63 -24.13 16 18 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 C -0.15 -3.29 5.50 -26.73 -0.15 -3.44 16 23 C -0.13 -2.66 9.39 37.16 0.35 -2.31 16 24 C -0.13 -1.72 9.68 -39.64 -0.38 -2.11 16 25 C -0.05 -0.70 9.60 -39.17 -0.38 -1.07 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.13 1.39 7.61 -52.49 -0.40 0.99 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.03 0.56 7.17 -51.93 -0.37 0.18 16 34 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 35 H 0.33 6.41 6.55 -39.30 -0.26 6.15 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.01 0.23 7.24 -51.93 -0.38 -0.15 16 38 H 0.09 2.38 6.25 -51.93 -0.32 2.05 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.54 7.05 -51.93 -0.37 1.17 16 41 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 42 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.13 1.61 7.65 -52.49 -0.40 1.21 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -28.86 356.64 -9.12 -37.98 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.58 Total: 5.01 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -2.14 Total: -13.36 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.05 Total: -38.37 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.69 Total: -12.63 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.86 -9.12 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.618 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds