Wall clock time and date at job start Tue Mar 31 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.47096 * 2 1 4 4 C 1.34712 * 117.00040 * 180.02562 * 3 2 1 5 5 O 1.21471 * 119.99923 * 359.97438 * 4 3 2 6 6 C 1.47731 * 120.00092 * 180.02562 * 4 3 2 7 7 C 1.39632 * 120.14694 * 0.26969 * 6 4 3 8 8 C 1.37940 * 119.84566 * 180.23283 * 7 6 4 9 9 C 1.38364 * 120.15071 * 359.49896 * 8 7 6 10 10 C 1.50702 * 119.84834 * 180.27570 * 9 8 7 11 11 N 1.46907 * 109.47010 * 90.00156 * 10 9 8 12 12 C 1.46895 * 110.99779 * 176.25954 * 11 10 9 13 13 H 1.08999 * 109.47531 * 35.73892 * 12 11 10 14 14 C 1.50706 * 109.47106 * 155.73759 * 12 11 10 15 15 H 1.07997 * 119.99646 * 0.02562 * 14 12 11 16 16 C 1.37876 * 119.99977 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99962 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99826 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47548 * 90.00046 * 18 16 14 20 20 H 1.48502 * 109.46702 * 209.99831 * 18 16 14 21 21 H 1.48498 * 109.47013 * 329.99512 * 18 16 14 22 22 C 1.52996 * 109.47187 * 275.74008 * 12 11 10 23 23 C 1.53008 * 109.46959 * 294.08661 * 22 12 11 24 24 C 1.38369 * 120.30399 * 0.24808 * 9 8 7 25 25 C 1.37946 * 120.14596 * 0.02562 * 24 9 8 26 26 H 1.09003 * 109.46843 * 299.99455 * 1 2 3 27 27 H 1.09001 * 109.47323 * 59.99531 * 1 2 3 28 28 H 1.08998 * 109.46540 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47254 * 240.00892 * 2 1 3 30 30 H 1.09000 * 109.47759 * 120.00167 * 2 1 3 31 31 H 1.08002 * 120.07610 * 0.02562 * 7 6 4 32 32 H 1.08000 * 119.92482 * 179.77341 * 8 7 6 33 33 H 1.09000 * 109.46979 * 209.99305 * 10 9 8 34 34 H 1.08998 * 109.47062 * 329.99731 * 10 9 8 35 35 H 1.00893 * 111.00351 * 52.30404 * 11 10 9 36 36 H 0.97004 * 119.99580 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47535 * 54.08829 * 22 12 11 38 38 H 1.09001 * 109.47127 * 174.09106 * 22 12 11 39 39 H 1.09001 * 109.46786 * 178.55599 * 23 22 12 40 40 H 1.08995 * 109.46875 * 298.55735 * 23 22 12 41 41 H 1.09001 * 109.46604 * 58.55825 * 23 22 12 42 42 H 1.07997 * 119.92641 * 180.02562 * 24 9 8 43 43 H 1.08002 * 120.07423 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0895 0.5822 -0.0005 6 6 3.9142 2.9106 0.0000 7 6 3.0665 4.0202 0.0067 8 6 3.6004 5.2920 0.0023 9 6 4.9725 5.4698 0.0017 10 6 5.5485 6.8624 0.0032 11 7 5.7365 7.3130 1.3887 12 6 6.3794 8.6332 1.4302 13 1 6.0248 9.2365 0.5945 14 6 6.0346 9.3193 2.7270 15 1 5.4015 8.8240 3.4482 16 6 6.5272 10.5794 2.9924 17 7 7.2985 11.1824 2.1142 18 14 6.1004 11.4296 4.6000 19 1 7.1171 11.0866 5.6266 20 1 6.0826 12.8999 4.3928 21 1 4.7621 10.9781 5.0586 22 6 7.8968 8.4649 1.3300 23 6 8.4136 7.7456 2.5776 24 6 5.8184 4.3747 0.0004 25 6 5.2978 3.0972 -0.0009 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8935 -0.5138 0.8899 31 1 1.9952 3.8828 0.0120 32 1 2.9458 6.1511 0.0039 33 1 6.5095 6.8586 -0.5111 34 1 4.8646 7.5389 -0.5093 35 1 6.2641 6.6371 1.9204 36 1 7.6454 12.0688 2.3012 37 1 8.1395 7.8770 0.4449 38 1 8.3669 9.4455 1.2551 39 1 9.4910 7.6029 2.4945 40 1 8.1936 8.3458 3.4604 41 1 7.9244 6.7756 2.6665 42 1 6.8885 4.5205 0.0003 43 1 5.9591 2.2433 -0.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:00 Heat of formation + Delta-G solvation = -87.501518 kcal Electronic energy + Delta-G solvation = -22431.151318 eV Core-core repulsion = 19054.201007 eV Total energy + Delta-G solvation = -3376.950311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65601 -40.12066 -38.20855 -37.63804 -34.89927 -33.33434 -32.60697 -31.95519 -31.28510 -28.55470 -26.69839 -25.11971 -24.48812 -23.55720 -23.15937 -21.66441 -21.14967 -19.12896 -18.29979 -18.00755 -17.60532 -16.89337 -16.66055 -16.20849 -15.81277 -15.45328 -15.19660 -15.13284 -14.70833 -14.48476 -14.34750 -14.13190 -13.84842 -13.60686 -13.45125 -13.28353 -12.95201 -12.85389 -12.72623 -12.53177 -12.43712 -12.37160 -12.04365 -11.86372 -11.68558 -11.57607 -11.54733 -11.38439 -10.94995 -10.41204 -9.98368 -9.92639 -8.92150 -8.03624 -6.11381 -0.37350 0.39922 1.43817 1.44151 1.46590 1.55795 1.58591 2.47384 2.74732 3.25760 3.55228 3.75797 3.81730 3.98814 4.01280 4.03192 4.07940 4.29685 4.34535 4.39776 4.56611 4.59488 4.68815 4.71091 4.76257 4.82546 4.89177 4.93540 5.06741 5.10596 5.13121 5.24871 5.29418 5.37139 5.41731 5.45414 5.62892 5.70910 5.77305 5.83910 5.86978 6.33730 6.63041 6.67820 6.84133 7.00753 7.56247 9.01626 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.002797 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.425724 B =10008.138118 C =10510.848702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.516 3.484 5 O -0.538 6.538 6 C -0.149 4.149 7 C -0.054 4.054 8 C -0.117 4.117 9 C -0.039 4.039 10 C 0.092 3.908 11 N -0.680 5.680 12 C 0.221 3.779 13 H 0.003 0.997 14 C -0.498 4.498 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.920 5.920 18 Si 0.949 3.051 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.272 1.272 22 C -0.139 4.139 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.056 4.056 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.141 0.859 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.333 0.667 36 H 0.258 0.742 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.048 0.952 42 H 0.141 0.859 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 -18.963 -5.873 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.363 3.637 5 O -0.430 6.430 6 C -0.150 4.150 7 C -0.072 4.072 8 C -0.136 4.136 9 C -0.039 4.039 10 C -0.037 4.037 11 N -0.311 5.311 12 C 0.112 3.888 13 H 0.020 0.980 14 C -0.537 4.537 15 H 0.070 0.930 16 C -0.184 4.184 17 N -0.560 5.560 18 Si 0.775 3.225 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.197 1.197 22 C -0.179 4.179 23 C -0.177 4.177 24 C -0.146 4.146 25 C -0.074 4.074 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.152 0.848 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.159 0.841 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.021 -18.843 -5.842 22.127 hybrid contribution 1.063 0.472 0.486 1.261 sum -8.958 -18.371 -5.356 21.128 Atomic orbital electron populations 1.21835 0.90241 1.04478 1.03798 1.23351 0.97148 0.78773 1.02739 1.86552 1.22816 1.34056 1.83703 1.21317 0.80920 0.89762 0.71723 1.90797 1.61093 1.43307 1.47779 1.19175 0.94440 0.89917 1.11492 1.21577 1.00875 0.90771 0.93949 1.21227 0.94633 0.97708 0.99985 1.20276 0.94367 0.94857 0.94441 1.20969 0.99034 0.91981 0.91676 1.60818 1.55338 1.04822 1.10161 1.18976 0.88894 0.85416 0.95475 0.97951 1.21266 1.28798 1.00497 1.03158 0.93018 1.25555 0.95365 0.97971 0.99483 1.70008 1.35074 1.14753 1.36214 0.85695 0.78621 0.77452 0.80685 1.20376 1.21360 1.19655 1.21963 1.00172 1.00182 0.95606 1.21460 0.98473 0.99078 0.98699 1.21155 1.00813 0.91172 1.01496 1.21274 0.93369 0.97920 0.94865 0.91311 0.91144 0.88024 0.91043 0.91241 0.82723 0.84125 0.94561 0.90931 0.84824 0.93256 0.95203 0.92047 0.93866 0.94091 0.93263 0.84094 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.35 -7.56 9.47 -56.22 -0.53 -8.09 16 4 C 0.52 13.10 7.90 70.33 0.56 13.65 16 5 O -0.54 -15.97 16.14 19.93 0.32 -15.65 16 6 C -0.15 -3.67 5.87 -20.10 -0.12 -3.79 16 7 C -0.05 -1.21 9.62 22.54 0.22 -0.99 16 8 C -0.12 -2.92 9.68 22.23 0.22 -2.70 16 9 C -0.04 -1.06 5.36 -19.80 -0.11 -1.17 16 10 C 0.09 3.00 5.60 85.56 0.48 3.48 16 11 N -0.68 -26.92 6.24 -499.45 -3.12 -30.03 16 12 C 0.22 10.55 2.33 44.17 0.10 10.66 16 13 H 0.00 0.14 7.86 -2.39 -0.02 0.12 16 14 C -0.50 -26.46 7.35 25.60 0.19 -26.27 16 15 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 16 C 0.01 0.78 5.23 84.65 0.44 1.22 16 17 N -0.92 -51.60 11.39 21.45 0.24 -51.36 16 18 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C -0.14 -6.27 5.50 30.60 0.17 -6.10 16 23 C -0.12 -4.84 9.39 71.98 0.68 -4.17 16 24 C -0.13 -3.18 9.68 22.23 0.22 -2.97 16 25 C -0.06 -1.37 9.60 22.53 0.22 -1.15 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.16 2.81 7.61 -2.91 -0.02 2.78 16 32 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.04 1.16 7.17 -2.39 -0.02 1.15 16 34 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 35 H 0.33 12.58 6.55 -89.70 -0.59 11.99 16 36 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 37 H 0.03 1.20 7.24 -2.39 -0.02 1.18 16 38 H 0.06 3.17 6.25 -2.39 -0.01 3.16 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.85 7.05 -2.39 -0.02 1.84 16 41 H 0.05 1.77 6.42 -2.39 -0.02 1.76 16 42 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 43 H 0.14 3.20 7.65 -2.91 -0.02 3.17 16 Total: -1.00 -61.41 356.64 3.79 -57.62 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.41 Total: 21.95 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 4.44 Total: -19.70 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.87 Total: -81.39 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.21 Total: -23.74 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -61.41 3.79 -57.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.884 kcal (2) G-P(sol) polarization free energy of solvation -61.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds