Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47464 * 2 1 4 4 H 1.08995 * 109.46768 * 55.87787 * 3 2 1 5 5 C 1.50700 * 109.47305 * 175.88162 * 3 2 1 6 6 H 1.07991 * 120.00282 * 114.75560 * 5 3 2 7 7 C 1.37882 * 119.99841 * 294.75780 * 5 3 2 8 8 N 1.31513 * 120.00197 * 170.13950 * 7 5 3 9 9 Si 1.86805 * 119.99890 * 350.14780 * 7 5 3 10 10 H 1.48503 * 109.46825 * 268.27328 * 9 7 5 11 11 H 1.48495 * 109.47185 * 28.27391 * 9 7 5 12 12 H 1.48496 * 109.47394 * 148.27908 * 9 7 5 13 13 N 1.46899 * 109.46646 * 295.87910 * 3 2 1 14 14 C 1.46901 * 110.99848 * 119.68079 * 13 3 2 15 15 C 1.53003 * 109.47128 * 183.98941 * 14 13 3 16 16 C 1.50695 * 109.47237 * 180.02562 * 15 14 13 17 17 C 1.38363 * 119.84601 * 269.72884 * 16 15 14 18 18 C 1.37948 * 120.15194 * 179.72222 * 17 16 15 19 19 C 1.39638 * 119.84370 * 0.57023 * 18 17 16 20 20 C 1.47721 * 120.14727 * 179.68541 * 19 18 17 21 21 O 1.21479 * 119.99871 * 180.02562 * 20 19 18 22 22 O 1.34709 * 120.00346 * 0.02562 * 20 19 18 23 23 C 1.45204 * 117.00122 * 180.02562 * 22 20 19 24 24 C 1.39632 * 119.69798 * 359.69986 * 19 18 17 25 25 C 1.37936 * 119.84836 * 0.02562 * 24 19 18 26 26 H 1.08996 * 109.47479 * 178.96618 * 1 2 3 27 27 H 1.09006 * 109.47192 * 298.97195 * 1 2 3 28 28 H 1.09004 * 109.47119 * 58.96753 * 1 2 3 29 29 H 1.09003 * 109.47324 * 239.99958 * 2 1 3 30 30 H 1.09008 * 109.47354 * 119.99702 * 2 1 3 31 31 H 0.96997 * 119.99729 * 179.97438 * 8 7 5 32 32 H 1.00899 * 111.00367 * 355.71949 * 13 3 2 33 33 H 1.08994 * 109.47316 * 303.98890 * 14 13 3 34 34 H 1.08999 * 109.47220 * 63.99200 * 14 13 3 35 35 H 1.09006 * 109.46812 * 299.99727 * 15 14 13 36 36 H 1.08997 * 109.47157 * 59.99589 * 15 14 13 37 37 H 1.08000 * 119.92677 * 359.97419 * 17 16 15 38 38 H 1.07994 * 120.08123 * 180.26837 * 18 17 16 39 39 H 1.08994 * 109.46882 * 300.00621 * 23 22 20 40 40 H 1.09005 * 109.46896 * 60.00314 * 23 22 20 41 41 H 1.08999 * 109.46914 * 180.02562 * 23 22 20 42 42 H 1.08002 * 120.06975 * 179.97438 * 24 19 18 43 43 H 1.08001 * 119.92295 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6176 1.9772 0.8507 5 6 3.5436 1.4437 0.1020 6 1 4.1402 1.8153 -0.7178 7 6 4.1575 0.9703 1.2422 8 7 5.4599 0.7889 1.2609 9 14 3.1392 0.5863 2.7605 10 1 3.0807 1.7861 3.6337 11 1 1.7639 0.2047 2.3507 12 1 3.7637 -0.5371 3.5044 13 7 1.6333 2.1056 -1.2461 14 6 0.7834 3.2713 -0.9690 15 6 0.2996 3.8751 -2.2890 16 6 -0.5717 5.0714 -2.0047 17 6 -1.9370 4.9079 -1.8513 18 6 -2.7398 5.9977 -1.5853 19 6 -2.1730 7.2698 -1.4827 20 6 -3.0273 8.4424 -1.2050 21 8 -2.5314 9.5479 -1.1167 22 8 -4.3562 8.2860 -1.0495 23 6 -5.1336 9.4823 -0.7793 24 6 -0.7951 7.4282 -1.6442 25 6 -0.0035 6.3290 -1.9042 26 1 -0.3634 -1.0274 -0.0185 27 1 -0.3634 0.4978 0.8991 28 1 -0.3633 0.5298 -0.8806 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 5.8918 0.4562 2.0631 32 1 1.1687 1.4583 -1.8652 33 1 -0.0760 2.9613 -0.3747 34 1 1.3570 4.0162 -0.4174 35 1 1.1592 4.1852 -2.8833 36 1 -0.2738 3.1303 -2.8406 37 1 -2.3748 3.9242 -1.9361 38 1 -3.8048 5.8682 -1.4615 39 1 -4.7828 9.9426 0.1443 40 1 -5.0160 10.1859 -1.6034 41 1 -6.1855 9.2162 -0.6755 42 1 -0.3505 8.4094 -1.5665 43 1 1.0623 6.4502 -2.0298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = -64.685799 kcal Electronic energy + Delta-G solvation = -22364.755629 eV Core-core repulsion = 18988.794682 eV Total energy + Delta-G solvation = -3375.960947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78452 -39.23331 -36.97152 -36.64147 -34.05058 -32.12930 -31.28852 -31.15483 -28.89757 -27.78074 -26.53565 -23.77414 -22.86282 -22.50918 -21.62681 -20.67911 -19.81060 -18.26106 -17.34960 -16.70597 -16.61770 -15.71114 -15.53566 -15.00952 -14.88267 -14.58102 -14.08086 -13.80659 -13.76172 -13.52884 -13.34911 -13.03488 -12.79310 -12.54537 -12.43354 -11.97415 -11.84430 -11.67384 -11.47410 -11.32057 -11.11917 -10.90131 -10.85448 -10.77644 -10.55610 -10.32877 -9.93169 -9.38961 -9.22153 -9.17272 -8.91780 -8.43791 -7.37132 -6.02565 -3.96795 0.49905 1.20311 2.32233 2.40614 3.27447 3.35799 3.39027 3.59144 4.41577 4.44002 4.61014 4.68920 4.76172 4.78824 4.85015 5.11505 5.19163 5.20130 5.23511 5.28095 5.43789 5.51907 5.66320 5.75108 5.82210 5.83353 5.88215 5.96596 5.98382 6.07090 6.15364 6.22290 6.36196 6.45721 6.50357 6.59429 6.68393 6.73026 6.87079 7.16925 7.47206 7.78843 7.92052 8.30358 8.75438 9.13800 9.62446 11.11076 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.002852 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.247313 B = 9816.088401 C = 9923.592461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.193 3.807 4 H 0.014 0.986 5 C -0.495 4.495 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.248 1.248 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.069 3.931 15 C -0.089 4.089 16 C -0.030 4.030 17 C -0.133 4.133 18 C -0.060 4.060 19 C -0.142 4.142 20 C 0.511 3.489 21 O -0.509 6.509 22 O -0.356 6.356 23 C 0.037 3.963 24 C -0.050 4.050 25 C -0.126 4.126 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.262 0.738 32 H 0.324 0.676 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 10.996 -6.303 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C 0.084 3.916 4 H 0.032 0.968 5 C -0.533 4.533 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.683 3.317 10 H -0.209 1.209 11 H -0.173 1.173 12 H -0.215 1.215 13 N -0.303 5.303 14 C -0.061 4.061 15 C -0.127 4.127 16 C -0.031 4.031 17 C -0.151 4.151 18 C -0.078 4.078 19 C -0.144 4.144 20 C 0.356 3.644 21 O -0.399 6.399 22 O -0.273 6.273 23 C -0.057 4.057 24 C -0.069 4.069 25 C -0.144 4.144 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.038 0.962 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.154 0.846 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.883 11.653 -6.193 23.863 hybrid contribution -1.344 -0.443 1.353 1.958 sum -21.226 11.210 -4.839 24.487 Atomic orbital electron populations 1.21897 0.98528 1.00259 1.00453 1.22583 0.92683 1.01202 1.02441 1.19562 0.96660 0.88595 0.86777 0.96821 1.21067 0.88975 1.40511 1.02758 0.90134 1.24946 0.94695 0.95253 0.98446 1.69927 1.09127 1.46271 1.28498 0.87412 0.82043 0.78173 0.84024 1.20851 1.17260 1.21476 1.60625 1.42726 1.09857 1.17126 1.21937 0.94887 0.94933 0.94324 1.20801 0.98611 0.94110 0.99146 1.20344 0.94051 0.95286 0.93398 1.21094 0.93214 0.99022 1.01784 1.21408 1.00418 0.91143 0.94829 1.19027 0.93145 0.91528 1.10659 1.21305 0.81118 0.88922 0.73006 1.90830 1.74730 1.27043 1.47275 1.86545 1.20081 1.38585 1.82074 1.23280 0.94864 0.85822 1.01737 1.21258 0.91398 0.99886 0.94309 1.21135 1.00649 0.91489 1.01162 0.93815 0.93758 0.93716 0.92087 0.91494 0.92839 0.85914 0.96232 0.91013 0.89465 0.90942 0.85139 0.84679 0.91794 0.91822 0.87964 0.84592 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.77 37.15 0.36 -2.16 16 2 C -0.15 -3.07 4.48 -26.73 -0.12 -3.19 16 3 C 0.19 4.34 1.76 -68.86 -0.12 4.22 16 4 H 0.01 0.33 6.38 -51.93 -0.33 0.00 16 5 C -0.49 -13.73 9.31 -34.44 -0.32 -14.05 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 7 C 0.07 1.93 5.40 -17.82 -0.10 1.83 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 9 Si 0.86 20.81 25.79 -169.99 -4.38 16.42 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.25 -5.55 5.12 56.52 0.29 -5.26 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.67 -12.83 6.19 -107.95 -0.67 -13.50 16 14 C 0.07 1.10 5.34 -3.82 -0.02 1.08 16 15 C -0.09 -1.09 5.56 -27.88 -0.15 -1.25 16 16 C -0.03 -0.35 5.14 -104.53 -0.54 -0.88 16 17 C -0.13 -1.38 9.68 -39.64 -0.38 -1.76 16 18 C -0.06 -0.61 9.62 -39.17 -0.38 -0.99 16 19 C -0.14 -1.65 5.87 -104.98 -0.62 -2.27 16 20 C 0.51 6.18 7.90 34.61 0.27 6.45 16 21 O -0.51 -7.28 16.14 -19.25 -0.31 -7.59 16 22 O -0.36 -3.60 9.82 -40.52 -0.40 -4.00 16 23 C 0.04 0.25 10.56 101.05 1.07 1.32 16 24 C -0.05 -0.58 9.60 -39.17 -0.38 -0.95 16 25 C -0.13 -1.44 9.68 -39.64 -0.38 -1.82 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.65 7.01 -51.93 -0.36 0.29 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.47 4.42 -51.92 -0.23 1.24 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.32 5.51 7.03 -39.29 -0.28 5.24 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 36 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.13 7.61 -52.49 -0.40 0.73 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.14 1.48 7.65 -52.49 -0.40 1.08 16 43 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -32.05 354.76 -8.18 -40.24 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.74 Total: 4.20 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -1.80 Total: -14.42 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.11 Total: -40.19 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.71 Total: -11.59 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.38 Total: 16.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.05 -8.18 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.450 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds