Wall clock time and date at job start Tue Mar 31 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47464 * 2 1 4 4 H 1.08995 * 109.46768 * 55.87787 * 3 2 1 5 5 C 1.50700 * 109.47305 * 175.88162 * 3 2 1 6 6 H 1.07991 * 120.00282 * 114.75560 * 5 3 2 7 7 C 1.37882 * 119.99841 * 294.75780 * 5 3 2 8 8 N 1.31513 * 120.00197 * 170.13950 * 7 5 3 9 9 Si 1.86805 * 119.99890 * 350.14780 * 7 5 3 10 10 H 1.48503 * 109.46825 * 268.27328 * 9 7 5 11 11 H 1.48495 * 109.47185 * 28.27391 * 9 7 5 12 12 H 1.48496 * 109.47394 * 148.27908 * 9 7 5 13 13 N 1.46899 * 109.46646 * 295.87910 * 3 2 1 14 14 C 1.46901 * 110.99848 * 119.68079 * 13 3 2 15 15 C 1.53003 * 109.47128 * 183.98941 * 14 13 3 16 16 C 1.50695 * 109.47237 * 180.02562 * 15 14 13 17 17 C 1.38363 * 119.84601 * 269.72884 * 16 15 14 18 18 C 1.37948 * 120.15194 * 179.72222 * 17 16 15 19 19 C 1.39638 * 119.84370 * 0.57023 * 18 17 16 20 20 C 1.47721 * 120.14727 * 179.68541 * 19 18 17 21 21 O 1.21479 * 119.99871 * 180.02562 * 20 19 18 22 22 O 1.34709 * 120.00346 * 0.02562 * 20 19 18 23 23 C 1.45204 * 117.00122 * 180.02562 * 22 20 19 24 24 C 1.39632 * 119.69798 * 359.69986 * 19 18 17 25 25 C 1.37936 * 119.84836 * 0.02562 * 24 19 18 26 26 H 1.08996 * 109.47479 * 178.96618 * 1 2 3 27 27 H 1.09006 * 109.47192 * 298.97195 * 1 2 3 28 28 H 1.09004 * 109.47119 * 58.96753 * 1 2 3 29 29 H 1.09003 * 109.47324 * 239.99958 * 2 1 3 30 30 H 1.09008 * 109.47354 * 119.99702 * 2 1 3 31 31 H 0.96997 * 119.99729 * 179.97438 * 8 7 5 32 32 H 1.00899 * 111.00367 * 355.71949 * 13 3 2 33 33 H 1.08994 * 109.47316 * 303.98890 * 14 13 3 34 34 H 1.08999 * 109.47220 * 63.99200 * 14 13 3 35 35 H 1.09006 * 109.46812 * 299.99727 * 15 14 13 36 36 H 1.08997 * 109.47157 * 59.99589 * 15 14 13 37 37 H 1.08000 * 119.92677 * 359.97419 * 17 16 15 38 38 H 1.07994 * 120.08123 * 180.26837 * 18 17 16 39 39 H 1.08994 * 109.46882 * 300.00621 * 23 22 20 40 40 H 1.09005 * 109.46896 * 60.00314 * 23 22 20 41 41 H 1.08999 * 109.46914 * 180.02562 * 23 22 20 42 42 H 1.08002 * 120.06975 * 179.97438 * 24 19 18 43 43 H 1.08001 * 119.92295 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6176 1.9772 0.8507 5 6 3.5436 1.4437 0.1020 6 1 4.1402 1.8153 -0.7178 7 6 4.1575 0.9703 1.2422 8 7 5.4599 0.7889 1.2609 9 14 3.1392 0.5863 2.7605 10 1 3.0807 1.7861 3.6337 11 1 1.7639 0.2047 2.3507 12 1 3.7637 -0.5371 3.5044 13 7 1.6333 2.1056 -1.2461 14 6 0.7834 3.2713 -0.9690 15 6 0.2996 3.8751 -2.2890 16 6 -0.5717 5.0714 -2.0047 17 6 -1.9370 4.9079 -1.8513 18 6 -2.7398 5.9977 -1.5853 19 6 -2.1730 7.2698 -1.4827 20 6 -3.0273 8.4424 -1.2050 21 8 -2.5314 9.5479 -1.1167 22 8 -4.3562 8.2860 -1.0495 23 6 -5.1336 9.4823 -0.7793 24 6 -0.7951 7.4282 -1.6442 25 6 -0.0035 6.3290 -1.9042 26 1 -0.3634 -1.0274 -0.0185 27 1 -0.3634 0.4978 0.8991 28 1 -0.3633 0.5298 -0.8806 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 5.8918 0.4562 2.0631 32 1 1.1687 1.4583 -1.8652 33 1 -0.0760 2.9613 -0.3747 34 1 1.3570 4.0162 -0.4174 35 1 1.1592 4.1852 -2.8833 36 1 -0.2738 3.1303 -2.8406 37 1 -2.3748 3.9242 -1.9361 38 1 -3.8048 5.8682 -1.4615 39 1 -4.7828 9.9426 0.1443 40 1 -5.0160 10.1859 -1.6034 41 1 -6.1855 9.2162 -0.6755 42 1 -0.3505 8.4094 -1.5665 43 1 1.0623 6.4502 -2.0298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:32 Heat of formation + Delta-G solvation = -84.640498 kcal Electronic energy + Delta-G solvation = -22365.620930 eV Core-core repulsion = 18988.794682 eV Total energy + Delta-G solvation = -3376.826248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64831 -40.10662 -38.47499 -37.54529 -35.32707 -34.07722 -32.50768 -32.02446 -30.06297 -28.90727 -27.83131 -24.98972 -24.01295 -23.68334 -22.75463 -21.77608 -21.34261 -19.10107 -18.77627 -18.19533 -17.42760 -17.02635 -16.63552 -16.32097 -16.04406 -15.71266 -15.52529 -14.88260 -14.76567 -14.55535 -14.47194 -14.29015 -14.11944 -13.72926 -13.53782 -13.33986 -13.05838 -12.99105 -12.63843 -12.51617 -12.31985 -12.23330 -12.10258 -11.86031 -11.82961 -11.67165 -11.58023 -11.23424 -11.07456 -10.57598 -9.99792 -9.83079 -8.92565 -8.22819 -6.21708 -0.38230 0.38228 1.34537 1.38344 1.42630 1.46509 1.64835 2.38213 2.73049 3.10827 3.44760 3.67811 3.83095 3.98518 4.09646 4.21054 4.28459 4.31236 4.33152 4.36846 4.40303 4.44397 4.49721 4.56830 4.67762 4.70969 4.82828 4.85755 5.00669 5.09408 5.13037 5.15882 5.16889 5.22950 5.26019 5.34036 5.37659 5.55087 5.62876 5.79675 5.86255 6.10763 6.60702 6.70648 6.85690 6.96206 7.42509 8.94812 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.002852 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.247313 B = 9816.088401 C = 9923.592461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.149 4.149 3 C 0.198 3.802 4 H 0.011 0.989 5 C -0.499 4.499 6 H 0.030 0.970 7 C 0.006 3.994 8 N -0.953 5.953 9 Si 0.923 3.077 10 H -0.284 1.284 11 H -0.212 1.212 12 H -0.290 1.290 13 N -0.687 5.687 14 C 0.072 3.928 15 C -0.076 4.076 16 C -0.038 4.038 17 C -0.128 4.128 18 C -0.053 4.053 19 C -0.154 4.154 20 C 0.511 3.489 21 O -0.541 6.541 22 O -0.355 6.355 23 C 0.028 3.972 24 C -0.060 4.060 25 C -0.134 4.134 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.262 0.738 32 H 0.339 0.661 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.710 10.163 -6.202 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.188 4.188 3 C 0.088 3.912 4 H 0.029 0.971 5 C -0.538 4.538 6 H 0.048 0.952 7 C -0.190 4.190 8 N -0.595 5.595 9 Si 0.747 3.253 10 H -0.210 1.210 11 H -0.135 1.135 12 H -0.216 1.216 13 N -0.319 5.319 14 C -0.057 4.057 15 C -0.114 4.114 16 C -0.039 4.039 17 C -0.146 4.146 18 C -0.071 4.071 19 C -0.156 4.156 20 C 0.359 3.641 21 O -0.432 6.432 22 O -0.271 6.271 23 C -0.064 4.064 24 C -0.079 4.079 25 C -0.152 4.152 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.906 10.819 -6.121 26.944 hybrid contribution -0.090 -0.096 1.215 1.222 sum -23.996 10.723 -4.906 26.737 Atomic orbital electron populations 1.21811 0.94669 1.02188 1.01613 1.22426 0.96060 0.98781 1.01512 1.19334 0.93050 0.90577 0.88222 0.97110 1.21418 0.91996 1.39245 1.01145 0.95186 1.25834 0.95756 0.95389 1.02022 1.70099 1.11441 1.48388 1.29532 0.86339 0.82099 0.77658 0.79189 1.21018 1.13464 1.21644 1.60360 1.44700 1.10821 1.15972 1.21903 0.94316 0.93107 0.96384 1.20639 0.98807 0.94795 0.97127 1.20324 0.94692 0.94680 0.94226 1.21357 0.92504 1.00171 1.00544 1.21643 1.01527 0.90285 0.93687 1.19184 0.93109 0.92218 1.11047 1.21450 0.81817 0.88580 0.72300 1.90812 1.75385 1.28170 1.48870 1.86531 1.19106 1.39960 1.81538 1.23603 0.96111 0.85122 1.01602 1.21300 0.91815 0.99901 0.94857 1.21223 1.00862 0.91791 1.01346 0.91592 0.93519 0.91621 0.92490 0.93140 0.92924 0.84246 0.94894 0.93524 0.90216 0.88625 0.82624 0.82471 0.92055 0.91808 0.84558 0.84896 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.77 71.98 0.70 -3.40 16 2 C -0.15 -5.73 4.48 30.59 0.14 -5.59 16 3 C 0.20 8.71 1.76 44.17 0.08 8.79 16 4 H 0.01 0.50 6.38 -2.39 -0.02 0.48 16 5 C -0.50 -28.51 9.31 25.60 0.24 -28.27 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 7 C 0.01 0.35 5.40 84.66 0.46 0.81 16 8 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 9 Si 0.92 43.08 25.79 68.60 1.77 44.85 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.21 -8.61 5.12 99.48 0.51 -8.10 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 13 N -0.69 -25.32 6.19 -495.45 -3.07 -28.39 16 14 C 0.07 2.17 5.34 86.30 0.46 2.63 16 15 C -0.08 -1.69 5.56 29.85 0.17 -1.53 16 16 C -0.04 -0.80 5.14 -19.81 -0.10 -0.90 16 17 C -0.13 -2.21 9.68 22.23 0.22 -1.99 16 18 C -0.05 -0.94 9.62 22.54 0.22 -0.72 16 19 C -0.15 -3.38 5.87 -20.10 -0.12 -3.50 16 20 C 0.51 11.92 7.90 70.33 0.56 12.48 16 21 O -0.54 -15.46 16.14 19.90 0.32 -15.13 16 22 O -0.36 -6.52 9.82 -56.19 -0.55 -7.07 16 23 C 0.03 0.34 10.56 113.37 1.20 1.54 16 24 C -0.06 -1.37 9.60 22.53 0.22 -1.16 16 25 C -0.13 -2.97 9.68 22.23 0.22 -2.76 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.06 1.58 7.01 -2.38 -0.02 1.56 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.09 4.42 -2.38 -0.01 2.08 16 31 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.34 10.69 7.03 -89.69 -0.63 10.05 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.90 8.08 -2.38 -0.02 1.88 16 36 H 0.10 1.71 8.08 -2.39 -0.02 1.69 16 37 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.16 2.02 7.61 -2.91 -0.02 2.00 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 41 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.13 3.00 7.65 -2.91 -0.02 2.98 16 43 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -72.58 354.76 3.58 -69.00 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.17 Total: 20.50 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 4.64 Total: -23.57 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -2.77 Total: -88.58 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.23 Total: -22.20 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.77 Total: 44.85 kcal Total: -72.58 3.58 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.642 kcal (2) G-P(sol) polarization free energy of solvation -72.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds