Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47495 * 2 1 4 4 H 1.08997 * 109.47005 * 57.07924 * 3 2 1 5 5 C 1.50700 * 109.47374 * 177.08194 * 3 2 1 6 6 H 1.07994 * 120.00046 * 114.25188 * 5 3 2 7 7 C 1.37877 * 119.99758 * 294.24944 * 5 3 2 8 8 N 1.31516 * 120.00207 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47059 * 90.00034 * 9 7 5 11 11 H 1.48498 * 109.47004 * 209.99709 * 9 7 5 12 12 H 1.48495 * 109.46786 * 329.99642 * 9 7 5 13 13 N 1.46904 * 109.46924 * 297.07798 * 3 2 1 14 14 C 1.46898 * 110.99975 * 133.59875 * 13 3 2 15 15 C 1.53005 * 109.47298 * 299.72510 * 14 13 3 16 16 C 1.50703 * 109.47151 * 59.72107 * 14 13 3 17 17 O 1.20823 * 120.00129 * 214.18378 * 16 14 13 18 18 O 1.34231 * 119.99947 * 34.17888 * 16 14 13 19 19 C 1.45201 * 117.00296 * 179.97438 * 18 16 14 20 20 C 1.50703 * 109.47380 * 179.72201 * 14 13 3 21 21 C 1.38231 * 119.99801 * 359.72531 * 20 14 13 22 22 C 1.38228 * 120.00045 * 179.80774 * 21 20 14 23 23 C 1.38236 * 120.00058 * 0.40408 * 22 21 20 24 24 C 1.38235 * 119.99765 * 359.85370 * 23 22 21 25 25 C 1.38229 * 119.99912 * 180.02562 * 20 14 13 26 26 H 1.09004 * 109.47145 * 57.29633 * 1 2 3 27 27 H 1.08998 * 109.47379 * 177.29967 * 1 2 3 28 28 H 1.09008 * 109.47020 * 297.29848 * 1 2 3 29 29 H 1.09002 * 109.47206 * 120.00322 * 2 1 3 30 30 H 1.09006 * 109.47020 * 239.99626 * 2 1 3 31 31 H 0.96998 * 120.00308 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99818 * 9.65068 * 13 3 2 33 33 H 1.08998 * 109.47125 * 66.56470 * 15 14 13 34 34 H 1.09001 * 109.46976 * 186.56777 * 15 14 13 35 35 H 1.08995 * 109.46792 * 306.56587 * 15 14 13 36 36 H 1.08996 * 109.47238 * 300.00314 * 19 18 16 37 37 H 1.09004 * 109.46932 * 60.00394 * 19 18 16 38 38 H 1.08997 * 109.46871 * 180.02562 * 19 18 16 39 39 H 1.07997 * 119.99985 * 0.02562 * 21 20 14 40 40 H 1.08003 * 120.00596 * 180.23332 * 22 21 20 41 41 H 1.08001 * 120.00433 * 179.82812 * 23 22 21 42 42 H 1.08003 * 120.00038 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00248 * 359.97438 * 25 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6346 1.9711 0.8626 5 6 3.5453 1.4430 0.0723 6 1 4.1258 1.8128 -0.7599 7 6 4.1814 0.9714 1.2010 8 7 3.4745 0.5215 2.2147 9 14 6.0472 0.9728 1.2911 10 1 6.5140 2.2591 1.8678 11 1 6.5021 -0.1492 2.1509 12 1 6.6087 0.8094 -0.0739 13 7 1.6089 2.1142 -1.2332 14 6 1.0532 3.4426 -0.9424 15 6 -0.1588 3.2977 -0.0199 16 6 2.1011 4.2883 -0.2658 17 8 1.7772 5.0941 0.5743 18 8 3.3943 4.1464 -0.5963 19 6 4.3485 4.9944 0.0956 20 6 0.6291 4.1025 -2.2292 21 6 0.8010 3.4446 -3.4326 22 6 0.4083 4.0482 -4.6126 23 6 -0.1486 5.3132 -4.5899 24 6 -0.3156 5.9733 -3.3868 25 6 0.0739 5.3682 -2.2065 26 1 -0.3634 0.5553 -0.8648 27 1 -0.3634 -1.0265 -0.0484 28 1 -0.3633 0.4713 0.9133 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.9220 0.1901 3.0090 32 1 0.9455 1.5480 -1.7405 33 1 0.1669 2.9288 0.9527 34 1 -0.6406 4.2678 0.1021 35 1 -0.8661 2.5932 -0.4574 36 1 4.1105 6.0406 -0.0959 37 1 4.2971 4.8002 1.1669 38 1 5.3543 4.7790 -0.2652 39 1 1.2388 2.4575 -3.4507 40 1 0.5391 3.5326 -5.5526 41 1 -0.4529 5.7859 -5.5120 42 1 -0.7503 6.9618 -3.3691 43 1 -0.0563 5.8841 -1.2667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = -50.608606 kcal Electronic energy + Delta-G solvation = -25037.847680 eV Core-core repulsion = 21662.497165 eV Total energy + Delta-G solvation = -3375.350514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40594 -38.76904 -36.85362 -35.68060 -33.61805 -31.70640 -30.81487 -29.88363 -28.44026 -27.26140 -26.27692 -24.06523 -22.92382 -22.15834 -21.82620 -19.91276 -19.04606 -17.10362 -16.84716 -16.22126 -15.83298 -15.63474 -14.97516 -14.51289 -14.45630 -14.14178 -13.63396 -13.42320 -13.17746 -13.03136 -12.84371 -12.54329 -12.24528 -12.19475 -12.07824 -11.56964 -11.49630 -11.30553 -11.17125 -10.91756 -10.83954 -10.71997 -10.60325 -10.03057 -9.86504 -9.81146 -9.78845 -9.57376 -9.18312 -8.73742 -8.55712 -8.31629 -7.42521 -5.94284 -3.93308 1.46622 1.58943 2.93976 3.31936 3.39985 3.43976 3.49479 3.99129 4.45336 4.75175 4.99450 5.12833 5.15448 5.31476 5.34475 5.43849 5.56347 5.67730 5.69737 5.79196 5.84568 5.97461 6.03323 6.08505 6.09613 6.16266 6.18836 6.24335 6.28693 6.46728 6.61424 6.67031 6.71880 6.82063 6.94354 7.04213 7.13602 7.20597 7.31503 7.63370 7.94238 8.11253 8.31039 8.56827 8.61638 9.17113 9.69028 11.13537 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.006361 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.471659 B = 4400.886061 C = 5012.950615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C 0.208 3.792 4 H 0.023 0.977 5 C -0.473 4.473 6 H 0.071 0.929 7 C 0.051 3.949 8 N -0.901 5.901 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.663 5.663 14 C 0.168 3.832 15 C -0.166 4.166 16 C 0.499 3.501 17 O -0.531 6.531 18 O -0.303 6.303 19 C 0.037 3.963 20 C -0.071 4.071 21 C -0.087 4.087 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.113 4.113 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.258 0.742 32 H 0.331 0.669 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 6.581 -9.735 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C 0.102 3.898 4 H 0.041 0.959 5 C -0.512 4.512 6 H 0.090 0.910 7 C -0.148 4.148 8 N -0.542 5.542 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.297 5.297 14 C 0.075 3.925 15 C -0.225 4.225 16 C 0.343 3.657 17 O -0.421 6.421 18 O -0.216 6.216 19 C -0.057 4.057 20 C -0.072 4.072 21 C -0.105 4.105 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.131 4.131 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.151 0.849 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.898 6.973 -9.445 13.138 hybrid contribution 0.288 -0.143 0.839 0.898 sum -5.610 6.830 -8.606 12.336 Atomic orbital electron populations 1.21983 0.99432 0.99740 0.99974 1.21882 0.91366 1.00642 1.02819 1.19395 0.95936 0.89535 0.84954 0.95926 1.21226 0.90431 1.38525 1.01068 0.91037 1.24949 0.97845 0.96153 0.95880 1.69907 1.34816 1.43625 1.05802 0.86641 0.86412 0.77335 0.77887 1.21049 1.21615 1.19798 1.61052 1.41418 1.00981 1.26244 1.19412 0.89832 0.91831 0.91470 1.22500 0.96647 1.02557 1.00779 1.23032 0.83393 0.80161 0.79164 1.90573 1.82544 1.36731 1.32268 1.86755 1.16281 1.58136 1.60461 1.23107 0.91611 0.92918 0.98109 1.19584 0.98992 0.94694 0.93904 1.21192 0.97244 1.01087 0.91020 1.21161 0.99568 0.95521 0.98126 1.21123 1.00021 0.95414 0.97634 1.21024 1.01061 0.99809 0.92455 1.21108 0.98523 0.94840 0.98661 0.94463 0.94272 0.93615 0.89034 0.93755 0.93252 0.84905 0.90602 0.91812 0.91467 0.93341 0.92140 0.88945 0.84182 0.86111 0.86499 0.86349 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.09 37.16 0.34 -2.41 16 2 C -0.13 -2.80 5.24 -26.73 -0.14 -2.94 16 3 C 0.21 4.85 1.13 -68.86 -0.08 4.77 16 4 H 0.02 0.60 5.40 -51.93 -0.28 0.32 16 5 C -0.47 -12.37 6.98 -34.44 -0.24 -12.61 16 6 H 0.07 1.93 7.24 -52.49 -0.38 1.55 16 7 C 0.05 1.39 5.31 -17.82 -0.09 1.29 16 8 N -0.90 -25.26 11.75 55.43 0.65 -24.61 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.66 -13.06 4.68 -96.58 -0.45 -13.51 16 14 C 0.17 3.15 0.74 -133.90 -0.10 3.05 16 15 C -0.17 -2.93 7.12 37.16 0.26 -2.67 16 16 C 0.50 10.72 5.26 36.01 0.19 10.91 16 17 O -0.53 -12.01 15.97 -18.75 -0.30 -12.31 16 18 O -0.30 -6.60 7.95 -39.26 -0.31 -6.91 16 19 C 0.04 0.68 10.56 101.05 1.07 1.75 16 20 C -0.07 -1.16 4.76 -104.63 -0.50 -1.66 16 21 C -0.09 -1.29 9.14 -39.59 -0.36 -1.65 16 22 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 23 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.11 -1.69 8.74 -39.58 -0.35 -2.04 16 26 H 0.04 0.59 5.68 -51.93 -0.29 0.30 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.09 2.29 6.48 -51.93 -0.34 1.96 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.33 5.83 5.35 -39.29 -0.21 5.62 16 33 H 0.08 1.53 6.36 -51.93 -0.33 1.20 16 34 H 0.06 1.05 7.11 -51.93 -0.37 0.68 16 35 H 0.07 1.05 6.99 -51.93 -0.36 0.69 16 36 H 0.05 0.79 8.13 -51.93 -0.42 0.36 16 37 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.14 2.06 6.42 -52.49 -0.34 1.73 16 40 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 43 H 0.12 1.87 7.52 -52.49 -0.39 1.48 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -29.46 341.29 -7.72 -37.18 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.24 Total: 8.83 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -1.19 Total: -10.00 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.20 Total: -38.12 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.61 Total: -19.22 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.46 -7.72 -37.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.425 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds