Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47495 * 2 1 4 4 H 1.08997 * 109.47005 * 57.07924 * 3 2 1 5 5 C 1.50700 * 109.47374 * 177.08194 * 3 2 1 6 6 H 1.07994 * 120.00046 * 114.25188 * 5 3 2 7 7 C 1.37877 * 119.99758 * 294.24944 * 5 3 2 8 8 N 1.31516 * 120.00207 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99980 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47059 * 90.00034 * 9 7 5 11 11 H 1.48498 * 109.47004 * 209.99709 * 9 7 5 12 12 H 1.48495 * 109.46786 * 329.99642 * 9 7 5 13 13 N 1.46904 * 109.46924 * 297.07798 * 3 2 1 14 14 C 1.46898 * 110.99975 * 133.59875 * 13 3 2 15 15 C 1.53005 * 109.47298 * 299.72510 * 14 13 3 16 16 C 1.50703 * 109.47151 * 59.72107 * 14 13 3 17 17 O 1.20823 * 120.00129 * 214.18378 * 16 14 13 18 18 O 1.34231 * 119.99947 * 34.17888 * 16 14 13 19 19 C 1.45201 * 117.00296 * 179.97438 * 18 16 14 20 20 C 1.50703 * 109.47380 * 179.72201 * 14 13 3 21 21 C 1.38231 * 119.99801 * 359.72531 * 20 14 13 22 22 C 1.38228 * 120.00045 * 179.80774 * 21 20 14 23 23 C 1.38236 * 120.00058 * 0.40408 * 22 21 20 24 24 C 1.38235 * 119.99765 * 359.85370 * 23 22 21 25 25 C 1.38229 * 119.99912 * 180.02562 * 20 14 13 26 26 H 1.09004 * 109.47145 * 57.29633 * 1 2 3 27 27 H 1.08998 * 109.47379 * 177.29967 * 1 2 3 28 28 H 1.09008 * 109.47020 * 297.29848 * 1 2 3 29 29 H 1.09002 * 109.47206 * 120.00322 * 2 1 3 30 30 H 1.09006 * 109.47020 * 239.99626 * 2 1 3 31 31 H 0.96998 * 120.00308 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99818 * 9.65068 * 13 3 2 33 33 H 1.08998 * 109.47125 * 66.56470 * 15 14 13 34 34 H 1.09001 * 109.46976 * 186.56777 * 15 14 13 35 35 H 1.08995 * 109.46792 * 306.56587 * 15 14 13 36 36 H 1.08996 * 109.47238 * 300.00314 * 19 18 16 37 37 H 1.09004 * 109.46932 * 60.00394 * 19 18 16 38 38 H 1.08997 * 109.46871 * 180.02562 * 19 18 16 39 39 H 1.07997 * 119.99985 * 0.02562 * 21 20 14 40 40 H 1.08003 * 120.00596 * 180.23332 * 22 21 20 41 41 H 1.08001 * 120.00433 * 179.82812 * 23 22 21 42 42 H 1.08003 * 120.00038 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00248 * 359.97438 * 25 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6346 1.9711 0.8626 5 6 3.5453 1.4430 0.0723 6 1 4.1258 1.8128 -0.7599 7 6 4.1814 0.9714 1.2010 8 7 3.4745 0.5215 2.2147 9 14 6.0472 0.9728 1.2911 10 1 6.5140 2.2591 1.8678 11 1 6.5021 -0.1492 2.1509 12 1 6.6087 0.8094 -0.0739 13 7 1.6089 2.1142 -1.2332 14 6 1.0532 3.4426 -0.9424 15 6 -0.1588 3.2977 -0.0199 16 6 2.1011 4.2883 -0.2658 17 8 1.7772 5.0941 0.5743 18 8 3.3943 4.1464 -0.5963 19 6 4.3485 4.9944 0.0956 20 6 0.6291 4.1025 -2.2292 21 6 0.8010 3.4446 -3.4326 22 6 0.4083 4.0482 -4.6126 23 6 -0.1486 5.3132 -4.5899 24 6 -0.3156 5.9733 -3.3868 25 6 0.0739 5.3682 -2.2065 26 1 -0.3634 0.5553 -0.8648 27 1 -0.3634 -1.0265 -0.0484 28 1 -0.3633 0.4713 0.9133 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.9220 0.1901 3.0090 32 1 0.9455 1.5480 -1.7405 33 1 0.1669 2.9288 0.9527 34 1 -0.6406 4.2678 0.1021 35 1 -0.8661 2.5932 -0.4574 36 1 4.1105 6.0406 -0.0959 37 1 4.2971 4.8002 1.1669 38 1 5.3543 4.7790 -0.2652 39 1 1.2388 2.4575 -3.4507 40 1 0.5391 3.5326 -5.5526 41 1 -0.4529 5.7859 -5.5120 42 1 -0.7503 6.9618 -3.3691 43 1 -0.0563 5.8841 -1.2667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = -66.771979 kcal Electronic energy + Delta-G solvation = -25038.548576 eV Core-core repulsion = 21662.497165 eV Total energy + Delta-G solvation = -3376.051411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92583 -40.04730 -38.39782 -37.36982 -35.27513 -33.55541 -31.89591 -31.17459 -29.87563 -28.79495 -28.12455 -25.53829 -24.64959 -23.37634 -23.02961 -21.52446 -20.64966 -18.54853 -18.45170 -18.07059 -17.45553 -16.96543 -16.54700 -16.23138 -15.68566 -15.48122 -15.12861 -14.93488 -14.62526 -14.41104 -14.26149 -14.01897 -13.79617 -13.61802 -13.39076 -13.11597 -13.06282 -12.93296 -12.78419 -12.64616 -12.47533 -12.07116 -11.90189 -11.86686 -11.55101 -11.52102 -11.47508 -11.24580 -11.06306 -10.35835 -9.76210 -9.65372 -9.11215 -8.00122 -6.04570 0.40046 0.56454 1.29486 1.40085 1.43193 1.52631 1.99834 2.48234 2.91656 3.27513 3.31701 3.64860 3.89288 4.05033 4.17380 4.23777 4.26661 4.34099 4.37457 4.47531 4.53516 4.58708 4.62059 4.65871 4.70119 4.74249 4.81025 4.93359 5.08484 5.16691 5.19475 5.24895 5.34464 5.51269 5.54879 5.62418 5.68657 5.75645 5.82043 5.91098 6.16068 6.28687 6.50166 6.85250 6.91793 7.08957 7.60839 9.05600 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.006361 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.471659 B = 4400.886061 C = 5012.950615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.217 3.783 4 H -0.011 1.011 5 C -0.474 4.474 6 H 0.061 0.939 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.939 3.061 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.265 1.265 13 N -0.658 5.658 14 C 0.171 3.829 15 C -0.157 4.157 16 C 0.490 3.510 17 O -0.553 6.553 18 O -0.322 6.322 19 C 0.031 3.969 20 C -0.091 4.091 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.128 4.128 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.254 0.746 32 H 0.344 0.656 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.144 0.856 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.322 7.306 -12.673 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C 0.110 3.890 4 H 0.006 0.994 5 C -0.513 4.513 6 H 0.079 0.921 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.766 3.234 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.190 1.190 13 N -0.292 5.292 14 C 0.077 3.923 15 C -0.216 4.216 16 C 0.335 3.665 17 O -0.445 6.445 18 O -0.235 6.235 19 C -0.063 4.063 20 C -0.092 4.092 21 C -0.118 4.118 22 C -0.139 4.139 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.166 0.834 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.135 0.865 39 H 0.153 0.847 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.162 0.838 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.692 7.700 -12.408 16.064 hybrid contribution 0.524 -0.281 1.679 1.781 sum -6.168 7.419 -10.729 14.429 Atomic orbital electron populations 1.21848 0.96221 1.01438 1.00480 1.21697 0.94253 0.99078 1.01161 1.19107 0.94431 0.90296 0.85194 0.99356 1.21442 0.92085 1.37366 1.00397 0.92080 1.25584 1.01393 0.96356 0.95847 1.70040 1.36013 1.44863 1.06177 0.85840 0.82348 0.77208 0.78031 1.20692 1.21746 1.18986 1.60842 1.42475 1.01435 1.24491 1.19454 0.89005 0.90756 0.93067 1.22421 0.96748 1.03360 0.99092 1.23701 0.83753 0.80189 0.78899 1.90539 1.82808 1.37905 1.33235 1.86724 1.16853 1.59009 1.60954 1.23317 0.92295 0.93854 0.96807 1.19420 1.01145 0.95620 0.92975 1.21239 0.97977 1.01153 0.91387 1.21496 0.98306 0.95861 0.98252 1.21555 0.98219 0.94877 0.98598 1.21345 1.00130 1.00799 0.91831 1.21120 0.99530 0.94599 0.99392 0.92205 0.92134 0.94623 0.92580 0.93406 0.93684 0.83401 0.93810 0.91066 0.89319 0.91267 0.94205 0.86545 0.84679 0.83286 0.82947 0.83805 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.09 71.98 0.65 -4.31 16 2 C -0.12 -5.43 5.24 30.59 0.16 -5.26 16 3 C 0.22 10.35 1.13 44.17 0.05 10.40 16 4 H -0.01 -0.61 5.40 -2.39 -0.01 -0.62 16 5 C -0.47 -25.30 6.98 25.60 0.18 -25.12 16 6 H 0.06 3.34 7.24 -2.91 -0.02 3.32 16 7 C 0.00 0.26 5.31 84.65 0.45 0.71 16 8 N -0.93 -53.91 11.75 21.45 0.25 -53.65 16 9 Si 0.94 44.10 29.54 68.60 2.03 46.13 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 N -0.66 -25.91 4.68 -459.48 -2.15 -28.07 16 14 C 0.17 6.43 0.74 2.04 0.00 6.43 16 15 C -0.16 -5.64 7.12 71.98 0.51 -5.13 16 16 C 0.49 21.56 5.26 71.24 0.37 21.93 16 17 O -0.55 -25.88 15.97 21.97 0.35 -25.53 16 18 O -0.32 -14.25 7.95 -51.43 -0.41 -14.66 16 19 C 0.03 1.16 10.56 113.37 1.20 2.35 16 20 C -0.09 -2.87 4.76 -19.87 -0.09 -2.97 16 21 C -0.10 -2.72 9.14 22.27 0.20 -2.52 16 22 C -0.12 -2.56 10.05 22.27 0.22 -2.33 16 23 C -0.11 -2.18 10.05 22.27 0.22 -1.95 16 24 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 25 C -0.13 -3.67 8.74 22.27 0.19 -3.47 16 26 H 0.06 1.79 5.68 -2.38 -0.01 1.78 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.06 2.89 6.48 -2.39 -0.02 2.88 16 30 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.34 11.80 5.35 -89.69 -0.48 11.32 16 33 H 0.04 1.84 6.36 -2.39 -0.02 1.82 16 34 H 0.07 2.39 7.11 -2.39 -0.02 2.38 16 35 H 0.09 2.71 6.99 -2.39 -0.02 2.69 16 36 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 37 H 0.04 1.61 8.13 -2.38 -0.02 1.59 16 38 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 39 H 0.14 3.75 6.42 -2.91 -0.02 3.74 16 40 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.11 3.36 7.52 -2.91 -0.02 3.33 16 Total: -1.00 -65.99 341.29 5.15 -60.84 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.53 Total: 28.66 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 4.55 Total: -13.72 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.90 Total: -81.72 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.06 Total: -40.19 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -65.99 5.15 -60.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.932 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds