Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47387 * 2 1 4 4 H 1.09006 * 109.46484 * 305.25864 * 3 2 1 5 5 C 1.50697 * 109.47292 * 185.26403 * 3 2 1 6 6 H 1.08006 * 119.99832 * 245.60499 * 5 3 2 7 7 C 1.37883 * 120.00490 * 65.60384 * 5 3 2 8 8 N 1.31513 * 119.99374 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00339 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47094 * 59.99623 * 9 7 5 11 11 H 1.48501 * 109.47322 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46982 * 300.00220 * 9 7 5 13 13 N 1.46901 * 109.47116 * 65.25902 * 3 2 1 14 14 C 1.46896 * 110.99972 * 222.14464 * 13 3 2 15 15 C 1.53008 * 109.47148 * 65.40104 * 14 13 3 16 16 C 1.50700 * 109.47161 * 305.40235 * 14 13 3 17 17 O 1.20832 * 120.00135 * 142.80578 * 16 14 13 18 18 O 1.34230 * 120.00175 * 322.80669 * 16 14 13 19 19 C 1.45200 * 117.00034 * 179.97438 * 18 16 14 20 20 C 1.50697 * 109.47454 * 185.40041 * 14 13 3 21 21 C 1.38226 * 120.00522 * 180.02562 * 20 14 13 22 22 C 1.38230 * 120.00277 * 179.72899 * 21 20 14 23 23 C 1.38235 * 119.99834 * 0.25123 * 22 21 20 24 24 C 1.38233 * 120.00143 * 0.02562 * 23 22 21 25 25 C 1.38230 * 120.00023 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.46784 * 304.64051 * 1 2 3 27 27 H 1.08995 * 109.47040 * 64.64083 * 1 2 3 28 28 H 1.09000 * 109.46804 * 184.64413 * 1 2 3 29 29 H 1.09005 * 109.47244 * 239.99726 * 2 1 3 30 30 H 1.09003 * 109.47551 * 120.00200 * 2 1 3 31 31 H 0.97000 * 119.99541 * 179.97438 * 8 7 5 32 32 H 1.00892 * 110.99728 * 98.19316 * 13 3 2 33 33 H 1.08994 * 109.46745 * 174.64902 * 15 14 13 34 34 H 1.09000 * 109.46982 * 294.64932 * 15 14 13 35 35 H 1.08991 * 109.46828 * 54.64809 * 15 14 13 36 36 H 1.09003 * 109.46553 * 179.97438 * 19 18 16 37 37 H 1.08988 * 109.47388 * 300.00244 * 19 18 16 38 38 H 1.08999 * 109.47091 * 60.00254 * 19 18 16 39 39 H 1.08000 * 120.00096 * 0.02562 * 21 20 14 40 40 H 1.08002 * 120.00248 * 180.27435 * 22 21 20 41 41 H 1.08006 * 120.00009 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.00117 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.00290 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6018 1.9827 -0.8392 5 6 3.5414 1.4444 -0.1303 6 1 4.1536 1.8052 0.6830 7 6 4.1336 0.9856 -1.2879 8 7 3.3881 0.5458 -2.2781 9 14 5.9945 0.9874 -1.4492 10 1 6.5846 0.1382 -0.3833 11 1 6.3767 0.4498 -2.7796 12 1 6.5018 2.3765 -1.3128 13 7 1.6568 2.0974 1.2579 14 6 1.1849 3.4672 1.0157 15 6 -0.1104 3.4241 0.2022 16 6 2.2337 4.2319 0.2499 17 8 1.9032 5.0268 -0.5979 18 8 3.5350 4.0298 0.5097 19 6 4.4897 4.8006 -0.2668 20 6 0.9275 4.1504 2.3340 21 6 0.4734 5.4557 2.3591 22 6 0.2320 6.0804 3.5683 23 6 0.4498 5.4016 4.7526 24 6 0.9094 4.0981 4.7277 25 6 1.1508 3.4734 3.5185 26 1 -0.3633 0.5841 0.8455 27 1 -0.3633 0.4401 -0.9286 28 1 -0.3633 -1.0243 0.0832 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8047 0.2234 -3.0926 32 1 2.4206 2.0893 1.9170 33 1 -0.5111 4.4329 0.1037 34 1 0.0956 3.0166 -0.7875 35 1 -0.8380 2.7921 0.7111 36 1 5.5024 4.5422 0.0426 37 1 4.3638 4.5744 -1.3255 38 1 4.3194 5.8642 -0.0997 39 1 0.3025 5.9859 1.4338 40 1 -0.1271 7.0988 3.5878 41 1 0.2608 5.8896 5.6974 42 1 1.0791 3.5676 5.6529 43 1 1.5095 2.4549 3.4990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = -56.156818 kcal Electronic energy + Delta-G solvation = -25101.587216 eV Core-core repulsion = 21725.996113 eV Total energy + Delta-G solvation = -3375.591103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43017 -38.76226 -36.56202 -35.73349 -33.62124 -31.60913 -30.86073 -29.94746 -28.63990 -27.28290 -26.08649 -23.91864 -22.84337 -22.14246 -21.76312 -19.80012 -18.91599 -17.29063 -16.98738 -16.50500 -15.90769 -15.63284 -15.00475 -14.57291 -14.52222 -13.86970 -13.70335 -13.36534 -13.17891 -12.93492 -12.66801 -12.35181 -12.13755 -12.03351 -11.70515 -11.52059 -11.48983 -11.26022 -11.14684 -11.03819 -10.83000 -10.67671 -10.58648 -10.25894 -10.02513 -9.83637 -9.70005 -9.55377 -8.98205 -8.74247 -8.56630 -8.39787 -7.53757 -6.02829 -4.08220 1.47135 1.58562 2.95235 3.24816 3.32326 3.33136 3.43563 3.98979 4.38265 4.77265 5.03640 5.12957 5.18364 5.28623 5.33533 5.42386 5.58440 5.65627 5.67896 5.80456 5.83097 6.06046 6.13263 6.20702 6.24722 6.27572 6.37200 6.47285 6.55592 6.61907 6.66695 6.68861 6.81867 7.01999 7.11449 7.12833 7.19225 7.36293 7.46956 7.79328 7.94487 7.98619 8.14905 8.47090 8.55487 8.99902 9.55595 11.02265 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.006471 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.757317 B = 4326.288554 C = 4924.461942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C 0.206 3.794 4 H 0.036 0.964 5 C -0.525 4.525 6 H 0.065 0.935 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.665 5.665 14 C 0.174 3.826 15 C -0.121 4.121 16 C 0.456 3.544 17 O -0.530 6.530 18 O -0.323 6.323 19 C 0.043 3.957 20 C -0.070 4.070 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.090 4.090 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.342 0.658 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 7.152 10.147 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C 0.099 3.901 4 H 0.054 0.946 5 C -0.564 4.564 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.297 5.297 14 C 0.080 3.920 15 C -0.178 4.178 16 C 0.298 3.702 17 O -0.418 6.418 18 O -0.237 6.237 19 C -0.051 4.051 20 C -0.071 4.071 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.108 4.108 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.947 7.030 9.684 12.949 hybrid contribution 2.096 0.553 -0.715 2.283 sum -2.852 7.583 8.969 12.086 Atomic orbital electron populations 1.21784 0.99009 0.98761 1.00376 1.21411 0.92118 0.98853 1.01214 1.19334 0.94087 0.91526 0.85135 0.94646 1.21709 0.91729 1.41640 1.01304 0.91656 1.24887 0.97590 0.95347 0.95862 1.69904 1.34812 1.42457 1.05451 0.86785 0.86451 0.78275 0.77158 1.20224 1.21497 1.20423 1.61198 1.41901 1.10600 1.16043 1.19717 0.92306 0.89110 0.90913 1.21787 0.94072 1.01934 1.00055 1.24827 0.83940 0.79746 0.81713 1.90550 1.82550 1.35529 1.33181 1.86658 1.16247 1.61334 1.59449 1.23032 0.91272 0.94008 0.96793 1.19610 0.99680 0.93966 0.93800 1.21091 0.99173 0.94505 0.98375 1.21023 1.01118 0.99740 0.92371 1.21117 1.00192 0.95126 0.97822 1.21147 1.00140 0.95086 0.97860 1.21172 0.97880 1.00715 0.91066 0.92953 0.94517 0.95503 0.90159 0.94596 0.92928 0.83819 0.92154 0.91107 0.90681 0.89157 0.92080 0.93411 0.85997 0.86360 0.86504 0.86112 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.86 37.16 0.37 -2.39 16 2 C -0.10 -2.20 5.49 -26.73 -0.15 -2.35 16 3 C 0.21 4.78 1.16 -68.87 -0.08 4.70 16 4 H 0.04 0.94 5.57 -51.93 -0.29 0.65 16 5 C -0.52 -13.26 6.38 -34.44 -0.22 -13.48 16 6 H 0.07 1.65 6.59 -52.48 -0.35 1.30 16 7 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.63 11.73 55.43 0.65 -23.98 16 9 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 N -0.66 -12.95 4.43 -96.59 -0.43 -13.38 16 14 C 0.17 3.23 0.75 -133.90 -0.10 3.13 16 15 C -0.12 -2.17 7.66 37.16 0.28 -1.89 16 16 C 0.46 9.64 5.05 36.01 0.18 9.83 16 17 O -0.53 -12.04 15.92 -18.76 -0.30 -12.34 16 18 O -0.32 -6.80 7.27 -39.26 -0.29 -7.09 16 19 C 0.04 0.80 10.56 101.05 1.07 1.87 16 20 C -0.07 -1.13 4.76 -104.62 -0.50 -1.63 16 21 C -0.11 -1.69 8.76 -39.59 -0.35 -2.03 16 22 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 23 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 25 C -0.09 -1.31 9.11 -39.58 -0.36 -1.67 16 26 H 0.05 0.96 7.12 -51.93 -0.37 0.59 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 2.06 6.43 -51.93 -0.33 1.72 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.34 6.64 6.30 -39.30 -0.25 6.39 16 33 H 0.06 1.00 7.12 -51.93 -0.37 0.63 16 34 H 0.07 1.43 6.52 -51.93 -0.34 1.09 16 35 H 0.07 1.24 7.62 -51.93 -0.40 0.84 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.06 1.23 8.13 -51.94 -0.42 0.81 16 38 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 39 H 0.12 1.85 7.54 -52.49 -0.40 1.45 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.14 2.00 6.27 -52.49 -0.33 1.67 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -28.49 343.59 -7.70 -36.19 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.36 Total: 9.83 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -1.14 Total: -10.02 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.22 Total: -37.36 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.58 Total: -19.42 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.49 -7.70 -36.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.970 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds