Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47387 * 2 1 4 4 H 1.09006 * 109.46484 * 305.25864 * 3 2 1 5 5 C 1.50697 * 109.47292 * 185.26403 * 3 2 1 6 6 H 1.08006 * 119.99832 * 245.60499 * 5 3 2 7 7 C 1.37883 * 120.00490 * 65.60384 * 5 3 2 8 8 N 1.31513 * 119.99374 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00339 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47094 * 59.99623 * 9 7 5 11 11 H 1.48501 * 109.47322 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46982 * 300.00220 * 9 7 5 13 13 N 1.46901 * 109.47116 * 65.25902 * 3 2 1 14 14 C 1.46896 * 110.99972 * 222.14464 * 13 3 2 15 15 C 1.53008 * 109.47148 * 65.40104 * 14 13 3 16 16 C 1.50700 * 109.47161 * 305.40235 * 14 13 3 17 17 O 1.20832 * 120.00135 * 142.80578 * 16 14 13 18 18 O 1.34230 * 120.00175 * 322.80669 * 16 14 13 19 19 C 1.45200 * 117.00034 * 179.97438 * 18 16 14 20 20 C 1.50697 * 109.47454 * 185.40041 * 14 13 3 21 21 C 1.38226 * 120.00522 * 180.02562 * 20 14 13 22 22 C 1.38230 * 120.00277 * 179.72899 * 21 20 14 23 23 C 1.38235 * 119.99834 * 0.25123 * 22 21 20 24 24 C 1.38233 * 120.00143 * 0.02562 * 23 22 21 25 25 C 1.38230 * 120.00023 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.46784 * 304.64051 * 1 2 3 27 27 H 1.08995 * 109.47040 * 64.64083 * 1 2 3 28 28 H 1.09000 * 109.46804 * 184.64413 * 1 2 3 29 29 H 1.09005 * 109.47244 * 239.99726 * 2 1 3 30 30 H 1.09003 * 109.47551 * 120.00200 * 2 1 3 31 31 H 0.97000 * 119.99541 * 179.97438 * 8 7 5 32 32 H 1.00892 * 110.99728 * 98.19316 * 13 3 2 33 33 H 1.08994 * 109.46745 * 174.64902 * 15 14 13 34 34 H 1.09000 * 109.46982 * 294.64932 * 15 14 13 35 35 H 1.08991 * 109.46828 * 54.64809 * 15 14 13 36 36 H 1.09003 * 109.46553 * 179.97438 * 19 18 16 37 37 H 1.08988 * 109.47388 * 300.00244 * 19 18 16 38 38 H 1.08999 * 109.47091 * 60.00254 * 19 18 16 39 39 H 1.08000 * 120.00096 * 0.02562 * 21 20 14 40 40 H 1.08002 * 120.00248 * 180.27435 * 22 21 20 41 41 H 1.08006 * 120.00009 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.00117 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.00290 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6018 1.9827 -0.8392 5 6 3.5414 1.4444 -0.1303 6 1 4.1536 1.8052 0.6830 7 6 4.1336 0.9856 -1.2879 8 7 3.3881 0.5458 -2.2781 9 14 5.9945 0.9874 -1.4492 10 1 6.5846 0.1382 -0.3833 11 1 6.3767 0.4498 -2.7796 12 1 6.5018 2.3765 -1.3128 13 7 1.6568 2.0974 1.2579 14 6 1.1849 3.4672 1.0157 15 6 -0.1104 3.4241 0.2022 16 6 2.2337 4.2319 0.2499 17 8 1.9032 5.0268 -0.5979 18 8 3.5350 4.0298 0.5097 19 6 4.4897 4.8006 -0.2668 20 6 0.9275 4.1504 2.3340 21 6 0.4734 5.4557 2.3591 22 6 0.2320 6.0804 3.5683 23 6 0.4498 5.4016 4.7526 24 6 0.9094 4.0981 4.7277 25 6 1.1508 3.4734 3.5185 26 1 -0.3633 0.5841 0.8455 27 1 -0.3633 0.4401 -0.9286 28 1 -0.3633 -1.0243 0.0832 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8047 0.2234 -3.0926 32 1 2.4206 2.0893 1.9170 33 1 -0.5111 4.4329 0.1037 34 1 0.0956 3.0166 -0.7875 35 1 -0.8380 2.7921 0.7111 36 1 5.5024 4.5422 0.0426 37 1 4.3638 4.5744 -1.3255 38 1 4.3194 5.8642 -0.0997 39 1 0.3025 5.9859 1.4338 40 1 -0.1271 7.0988 3.5878 41 1 0.2608 5.8896 5.6974 42 1 1.0791 3.5676 5.6529 43 1 1.5095 2.4549 3.4990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = -71.102038 kcal Electronic energy + Delta-G solvation = -25102.235289 eV Core-core repulsion = 21725.996113 eV Total energy + Delta-G solvation = -3376.239176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95795 -40.00633 -38.14231 -37.42353 -35.29284 -33.45621 -31.98385 -31.27987 -30.03519 -28.83093 -27.91467 -25.44526 -24.51850 -23.37237 -22.99096 -21.42336 -20.52961 -18.99364 -18.50593 -18.04987 -17.57716 -16.99988 -16.70739 -16.10822 -15.74870 -15.35306 -15.07507 -14.86440 -14.62192 -14.32992 -14.17021 -13.88269 -13.64177 -13.39738 -13.21341 -13.12729 -13.03505 -12.95222 -12.81057 -12.62576 -12.53125 -12.22543 -11.88725 -11.81750 -11.63890 -11.57306 -11.44448 -11.31951 -10.86735 -10.42208 -9.76122 -9.64943 -9.25052 -8.04486 -6.15479 0.41060 0.56784 1.31103 1.38419 1.41011 1.46798 1.92358 2.43626 2.93343 3.22310 3.36925 3.70076 3.89576 4.02632 4.21312 4.23057 4.23266 4.30499 4.37673 4.60089 4.62113 4.65309 4.71668 4.78924 4.82160 4.83773 4.93950 5.09288 5.11319 5.17640 5.24230 5.44128 5.51598 5.54971 5.62475 5.64813 5.68944 5.74792 5.81967 6.06743 6.14617 6.17709 6.28447 6.68566 6.87149 7.03482 7.51338 8.98547 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.006471 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.757317 B = 4326.288554 C = 4924.461942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.522 4.522 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.920 5.920 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.295 1.295 12 H -0.267 1.267 13 N -0.648 5.648 14 C 0.176 3.824 15 C -0.115 4.115 16 C 0.450 3.550 17 O -0.555 6.555 18 O -0.335 6.335 19 C 0.038 3.962 20 C -0.090 4.090 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.102 4.102 26 H 0.064 0.936 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.256 0.744 32 H 0.344 0.656 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 8.074 13.201 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.132 4.132 3 C 0.108 3.892 4 H 0.018 0.982 5 C -0.561 4.561 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.560 5.560 9 Si 0.761 3.239 10 H -0.195 1.195 11 H -0.221 1.221 12 H -0.191 1.191 13 N -0.280 5.280 14 C 0.082 3.918 15 C -0.172 4.172 16 C 0.293 3.707 17 O -0.445 6.445 18 O -0.249 6.249 19 C -0.056 4.056 20 C -0.091 4.091 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.133 4.133 24 C -0.138 4.138 25 C -0.120 4.120 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.164 0.836 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.167 0.833 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.060 7.958 12.766 15.871 hybrid contribution 2.118 0.341 -1.597 2.674 sum -2.943 8.299 11.168 14.222 Atomic orbital electron populations 1.21643 0.96500 1.00185 1.00355 1.21268 0.94361 0.97941 0.99645 1.19064 0.92866 0.91781 0.85504 0.98233 1.21978 0.92913 1.40315 1.00929 0.91601 1.25557 1.01237 0.95502 0.95853 1.70048 1.36188 1.43902 1.05831 0.85971 0.82254 0.78829 0.76810 1.19493 1.22126 1.19147 1.61108 1.41468 1.11321 1.14085 1.19798 0.91383 0.88199 0.92457 1.21729 0.94414 1.02577 0.98464 1.25438 0.84328 0.79503 0.81392 1.90521 1.82853 1.36857 1.34273 1.86628 1.16596 1.61901 1.59786 1.23214 0.91934 0.95134 0.95272 1.19433 1.02183 0.94748 0.92689 1.21103 1.00184 0.94195 0.99165 1.21340 1.00142 1.00871 0.91685 1.21550 0.98167 0.94720 0.98889 1.21485 0.98857 0.95525 0.97927 1.21230 0.98515 1.00757 0.91467 0.91664 0.95560 0.93516 0.93475 0.94258 0.93453 0.83554 0.91231 0.94191 0.89172 0.86832 0.94422 0.91398 0.87218 0.83836 0.82982 0.83281 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.86 71.98 0.71 -4.29 16 2 C -0.09 -4.28 5.49 30.59 0.17 -4.12 16 3 C 0.22 10.24 1.16 44.17 0.05 10.30 16 4 H 0.00 -0.01 5.57 -2.38 -0.01 -0.02 16 5 C -0.52 -26.77 6.38 25.60 0.16 -26.61 16 6 H 0.07 3.32 6.59 -2.91 -0.02 3.30 16 7 C 0.02 0.93 5.30 84.66 0.45 1.38 16 8 N -0.92 -52.81 11.73 21.45 0.25 -52.56 16 9 Si 0.93 42.56 29.54 68.60 2.03 44.59 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 N -0.65 -25.28 4.43 -459.49 -2.03 -27.32 16 14 C 0.18 6.58 0.75 2.04 0.00 6.58 16 15 C -0.11 -4.20 7.66 71.98 0.55 -3.65 16 16 C 0.45 19.42 5.05 71.24 0.36 19.78 16 17 O -0.55 -26.01 15.92 21.95 0.35 -25.66 16 18 O -0.33 -14.19 7.27 -51.42 -0.37 -14.56 16 19 C 0.04 1.41 10.56 113.37 1.20 2.61 16 20 C -0.09 -2.82 4.76 -19.87 -0.09 -2.91 16 21 C -0.13 -3.64 8.76 22.27 0.19 -3.45 16 22 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 23 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 24 C -0.12 -2.51 10.05 22.27 0.22 -2.28 16 25 C -0.10 -2.75 9.11 22.27 0.20 -2.54 16 26 H 0.06 2.33 7.12 -2.39 -0.02 2.31 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 29 H 0.05 2.48 6.43 -2.38 -0.02 2.47 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.34 13.25 6.30 -89.70 -0.57 12.69 16 33 H 0.07 2.36 7.12 -2.39 -0.02 2.35 16 34 H 0.04 1.69 6.52 -2.39 -0.02 1.67 16 35 H 0.09 2.95 7.62 -2.39 -0.02 2.94 16 36 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.04 1.54 8.13 -2.39 -0.02 1.52 16 38 H 0.07 2.19 8.13 -2.39 -0.02 2.18 16 39 H 0.11 3.32 7.54 -2.91 -0.02 3.30 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 43 H 0.14 3.67 6.27 -2.91 -0.02 3.65 16 Total: -1.00 -63.19 343.59 5.29 -57.91 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.44 Total: 31.22 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.62 Total: -13.61 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -1.78 Total: -79.88 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.02 Total: -40.23 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -63.19 5.29 -57.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.196 kcal (2) G-P(sol) polarization free energy of solvation -63.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds