Wall clock time and date at job start Tue Mar 31 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47593 * 2 1 4 4 H 1.08998 * 109.47920 * 176.72876 * 3 2 1 5 5 C 1.50698 * 109.47432 * 56.72311 * 3 2 1 6 6 H 1.08003 * 120.00336 * 243.76852 * 5 3 2 7 7 C 1.37880 * 120.00124 * 63.76266 * 5 3 2 8 8 N 1.31507 * 120.00513 * 198.72119 * 7 5 3 9 9 Si 1.86806 * 119.99406 * 18.72335 * 7 5 3 10 10 H 1.48495 * 109.47067 * 89.11827 * 9 7 5 11 11 H 1.48499 * 109.46841 * 209.11513 * 9 7 5 12 12 H 1.48498 * 109.47363 * 329.11454 * 9 7 5 13 13 N 1.46907 * 109.46958 * 296.72554 * 3 2 1 14 14 C 1.46894 * 111.00038 * 259.43250 * 13 3 2 15 15 C 1.52999 * 109.46850 * 55.04953 * 14 13 3 16 16 C 1.50700 * 109.47331 * 175.04507 * 14 13 3 17 17 O 1.20821 * 120.00637 * 214.18156 * 16 14 13 18 18 O 1.34233 * 119.99684 * 34.18558 * 16 14 13 19 19 C 1.45196 * 117.00067 * 185.06157 * 18 16 14 20 20 C 1.50695 * 109.47392 * 295.04882 * 14 13 3 21 21 C 1.38233 * 120.00037 * 339.18024 * 20 14 13 22 22 C 1.38238 * 119.99853 * 179.80907 * 21 20 14 23 23 C 1.38234 * 120.00081 * 0.39599 * 22 21 20 24 24 C 1.38237 * 120.00056 * 359.86182 * 23 22 21 25 25 C 1.38235 * 119.99758 * 359.94904 * 24 23 22 26 26 H 1.08996 * 109.46631 * 65.47570 * 1 2 3 27 27 H 1.09001 * 109.47079 * 185.47781 * 1 2 3 28 28 H 1.09001 * 109.46862 * 305.47530 * 1 2 3 29 29 H 1.09003 * 109.47002 * 239.99304 * 2 1 3 30 30 H 1.09005 * 109.47267 * 120.00425 * 2 1 3 31 31 H 0.97003 * 120.00089 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99773 * 23.39300 * 13 3 2 33 33 H 1.09000 * 109.47687 * 54.39867 * 15 14 13 34 34 H 1.09006 * 109.47250 * 174.39855 * 15 14 13 35 35 H 1.08999 * 109.47174 * 294.39647 * 15 14 13 36 36 H 1.09002 * 109.47438 * 295.16234 * 19 18 16 37 37 H 1.09009 * 109.47087 * 55.16367 * 19 18 16 38 38 H 1.08999 * 109.47346 * 175.15788 * 19 18 16 39 39 H 1.07994 * 120.00117 * 359.97438 * 21 20 14 40 40 H 1.08002 * 120.00060 * 180.22902 * 22 21 20 41 41 H 1.08001 * 119.99683 * 179.82982 * 23 22 21 42 42 H 1.08006 * 120.00135 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99638 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1285 1.4430 0.0586 5 6 1.4726 2.1759 1.1878 6 1 0.8093 3.0149 1.0379 7 6 1.8003 1.7760 2.4660 8 7 1.0526 2.1457 3.4827 9 14 3.3063 0.7088 2.7534 10 1 4.4933 1.5751 2.9670 11 1 3.0903 -0.1394 3.9530 12 1 3.5325 -0.1576 1.5688 13 7 1.6161 2.1117 -1.2371 14 6 2.7140 2.1610 -2.2118 15 6 3.2406 0.7459 -2.4588 16 6 2.2097 2.7425 -3.5074 17 8 2.6545 2.3494 -4.5598 18 8 1.2664 3.6974 -3.4923 19 6 0.7469 4.1312 -4.7769 20 6 3.8258 3.0239 -1.6730 21 6 3.5637 3.9478 -0.6787 22 6 4.5844 4.7365 -0.1817 23 6 5.8655 4.6070 -0.6846 24 6 6.1265 3.6868 -1.6826 25 6 5.1066 2.8953 -2.1769 26 1 -0.3632 0.4266 -0.9349 27 1 -0.3633 -1.0230 0.0981 28 1 -0.3633 0.5964 0.8369 29 1 1.8933 -0.5140 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.2830 1.8640 4.3819 32 1 0.8029 1.6625 -1.6307 33 1 2.4156 0.0974 -2.7534 34 1 3.9861 0.7692 -3.2537 35 1 3.6954 0.3629 -1.5453 36 1 1.5424 4.6107 -5.3474 37 1 0.3739 3.2680 -5.3282 38 1 -0.0656 4.8405 -4.6195 39 1 2.5621 4.0516 -0.2884 40 1 4.3804 5.4558 0.5977 41 1 6.6623 5.2252 -0.2981 42 1 7.1273 3.5859 -2.0758 43 1 5.3106 2.1761 -2.9563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:48 Heat of formation + Delta-G solvation = -45.442413 kcal Electronic energy + Delta-G solvation = -25004.248861 eV Core-core repulsion = 21629.122370 eV Total energy + Delta-G solvation = -3375.126492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.72977 -38.96542 -37.06685 -36.25336 -33.73044 -31.76296 -30.61946 -29.70080 -28.53263 -27.86513 -26.54301 -24.35818 -22.92931 -22.05042 -21.88379 -19.92194 -19.23479 -17.73798 -16.77854 -16.62842 -16.04862 -15.80577 -15.05248 -14.67267 -14.37284 -14.03134 -13.79216 -13.43823 -13.26980 -13.19429 -12.90334 -12.67619 -12.53295 -12.43884 -12.12027 -11.95766 -11.74781 -11.55850 -11.03421 -10.96071 -10.76003 -10.67127 -10.59467 -10.53133 -10.34486 -10.08833 -9.83198 -9.40283 -9.35011 -8.46464 -8.35743 -8.28954 -7.59947 -6.09533 -3.97773 1.63620 1.89149 2.39906 2.97913 3.27296 3.35352 3.40674 4.22058 4.42788 4.58658 4.89263 5.09289 5.19289 5.21014 5.25098 5.30102 5.33117 5.40862 5.56011 5.58682 5.82058 5.88735 5.97226 6.01352 6.06014 6.12555 6.21717 6.29345 6.35421 6.53224 6.58165 6.60474 6.75841 6.81927 6.86131 7.01206 7.07851 7.15168 7.36306 7.49190 7.66267 7.78947 7.93989 8.18459 8.65084 9.07851 9.58822 11.03124 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.007758 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.952491 B = 3608.100376 C = 4601.949307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.156 4.156 3 C 0.190 3.810 4 H 0.032 0.968 5 C -0.492 4.492 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.849 3.151 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.259 1.259 13 N -0.650 5.650 14 C 0.167 3.833 15 C -0.170 4.170 16 C 0.482 3.518 17 O -0.516 6.516 18 O -0.332 6.332 19 C 0.032 3.968 20 C -0.085 4.085 21 C -0.054 4.054 22 C -0.130 4.130 23 C -0.118 4.118 24 C -0.138 4.138 25 C -0.113 4.113 26 H 0.036 0.964 27 H 0.028 0.972 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.262 0.738 32 H 0.338 0.662 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.160 0.840 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 1.728 -11.893 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.195 4.195 3 C 0.082 3.918 4 H 0.050 0.950 5 C -0.530 4.530 6 H 0.101 0.899 7 C -0.122 4.122 8 N -0.525 5.525 9 Si 0.676 3.324 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.184 1.184 13 N -0.283 5.283 14 C 0.074 3.926 15 C -0.229 4.229 16 C 0.324 3.676 17 O -0.404 6.404 18 O -0.246 6.246 19 C -0.063 4.063 20 C -0.086 4.086 21 C -0.071 4.071 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.157 4.157 25 C -0.132 4.132 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.158 0.842 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.177 0.823 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.349 2.274 -11.790 12.771 hybrid contribution 0.972 -1.641 -0.140 1.912 sum 5.322 0.633 -11.930 13.078 Atomic orbital electron populations 1.21640 0.95957 0.99543 1.02270 1.22619 0.97000 1.00131 0.99751 1.19677 0.95549 0.88805 0.87784 0.95025 1.20747 1.28897 1.15974 0.87394 0.89871 1.24773 0.95806 0.95414 0.96233 1.69983 1.36303 1.46602 0.99608 0.87436 0.85574 0.81358 0.78025 1.20522 1.21625 1.18387 1.60867 1.03883 1.59484 1.04070 1.19557 0.92235 0.93347 0.87460 1.22626 1.02231 0.94781 1.03216 1.23744 0.76257 0.76342 0.91232 1.90607 1.56777 1.59700 1.33317 1.86691 1.51816 1.51857 1.34264 1.23254 0.99125 1.00091 0.83785 1.19331 0.92421 0.98129 0.98709 1.21583 1.01596 0.91284 0.92682 1.21258 0.92965 1.00342 1.00213 1.21149 0.96939 0.98512 0.97056 1.20923 0.98531 0.97612 0.98592 1.21030 0.92624 0.99513 0.99991 0.94481 0.95255 0.89785 0.94934 0.92309 0.92812 0.84162 0.91961 0.91289 0.90248 0.92361 0.92289 0.88177 0.82270 0.86019 0.86709 0.86653 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.46 37.16 0.35 -2.25 16 2 C -0.16 -3.13 4.88 -26.74 -0.13 -3.26 16 3 C 0.19 4.04 0.36 -68.87 -0.02 4.02 16 4 H 0.03 0.72 4.35 -51.93 -0.23 0.49 16 5 C -0.49 -12.40 6.70 -34.44 -0.23 -12.63 16 6 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 7 C 0.08 2.14 5.32 -17.82 -0.09 2.05 16 8 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 9 Si 0.85 20.43 25.95 -169.99 -4.41 16.01 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -5.90 5.50 56.52 0.31 -5.59 16 13 N -0.65 -12.30 4.64 -96.60 -0.45 -12.75 16 14 C 0.17 2.92 0.75 -133.91 -0.10 2.82 16 15 C -0.17 -2.74 6.11 37.16 0.23 -2.51 16 16 C 0.48 8.26 6.66 36.01 0.24 8.50 16 17 O -0.52 -9.28 15.72 -18.75 -0.29 -9.58 16 18 O -0.33 -5.34 10.26 -39.27 -0.40 -5.74 16 19 C 0.03 0.37 10.58 101.05 1.07 1.44 16 20 C -0.09 -1.53 3.73 -104.63 -0.39 -1.92 16 21 C -0.05 -1.01 8.34 -39.58 -0.33 -1.34 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 23 C -0.12 -1.78 10.05 -39.58 -0.40 -2.17 16 24 C -0.14 -2.05 10.05 -39.58 -0.40 -2.44 16 25 C -0.11 -1.83 9.15 -39.58 -0.36 -2.20 16 26 H 0.04 0.63 6.57 -51.93 -0.34 0.29 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.86 6.92 -51.93 -0.36 1.50 16 29 H 0.03 0.58 5.75 -51.93 -0.30 0.28 16 30 H 0.06 1.27 4.98 -51.93 -0.26 1.02 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.34 6.11 6.35 -39.29 -0.25 5.86 16 33 H 0.06 0.95 7.41 -51.93 -0.38 0.57 16 34 H 0.07 1.04 6.38 -51.93 -0.33 0.71 16 35 H 0.08 1.34 6.28 -51.93 -0.33 1.02 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.66 8.10 -51.92 -0.42 0.24 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.16 3.32 6.05 -52.49 -0.32 3.00 16 40 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 43 H 0.12 1.75 6.62 -52.49 -0.35 1.40 16 LS Contribution 333.16 15.07 5.02 5.02 Total: -1.00 -28.82 333.16 -6.78 -35.60 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.05 Total: 10.62 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.97 Total: -14.49 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.32 Total: -37.44 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.70 Total: -15.32 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.41 Total: 16.01 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.82 -6.78 -35.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.842 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds