Wall clock time and date at job start Tue Mar 31 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47593 * 2 1 4 4 H 1.08998 * 109.47920 * 176.72876 * 3 2 1 5 5 C 1.50698 * 109.47432 * 56.72311 * 3 2 1 6 6 H 1.08003 * 120.00336 * 243.76852 * 5 3 2 7 7 C 1.37880 * 120.00124 * 63.76266 * 5 3 2 8 8 N 1.31507 * 120.00513 * 198.72119 * 7 5 3 9 9 Si 1.86806 * 119.99406 * 18.72335 * 7 5 3 10 10 H 1.48495 * 109.47067 * 89.11827 * 9 7 5 11 11 H 1.48499 * 109.46841 * 209.11513 * 9 7 5 12 12 H 1.48498 * 109.47363 * 329.11454 * 9 7 5 13 13 N 1.46907 * 109.46958 * 296.72554 * 3 2 1 14 14 C 1.46894 * 111.00038 * 259.43250 * 13 3 2 15 15 C 1.52999 * 109.46850 * 55.04953 * 14 13 3 16 16 C 1.50700 * 109.47331 * 175.04507 * 14 13 3 17 17 O 1.20821 * 120.00637 * 214.18156 * 16 14 13 18 18 O 1.34233 * 119.99684 * 34.18558 * 16 14 13 19 19 C 1.45196 * 117.00067 * 185.06157 * 18 16 14 20 20 C 1.50695 * 109.47392 * 295.04882 * 14 13 3 21 21 C 1.38233 * 120.00037 * 339.18024 * 20 14 13 22 22 C 1.38238 * 119.99853 * 179.80907 * 21 20 14 23 23 C 1.38234 * 120.00081 * 0.39599 * 22 21 20 24 24 C 1.38237 * 120.00056 * 359.86182 * 23 22 21 25 25 C 1.38235 * 119.99758 * 359.94904 * 24 23 22 26 26 H 1.08996 * 109.46631 * 65.47570 * 1 2 3 27 27 H 1.09001 * 109.47079 * 185.47781 * 1 2 3 28 28 H 1.09001 * 109.46862 * 305.47530 * 1 2 3 29 29 H 1.09003 * 109.47002 * 239.99304 * 2 1 3 30 30 H 1.09005 * 109.47267 * 120.00425 * 2 1 3 31 31 H 0.97003 * 120.00089 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99773 * 23.39300 * 13 3 2 33 33 H 1.09000 * 109.47687 * 54.39867 * 15 14 13 34 34 H 1.09006 * 109.47250 * 174.39855 * 15 14 13 35 35 H 1.08999 * 109.47174 * 294.39647 * 15 14 13 36 36 H 1.09002 * 109.47438 * 295.16234 * 19 18 16 37 37 H 1.09009 * 109.47087 * 55.16367 * 19 18 16 38 38 H 1.08999 * 109.47346 * 175.15788 * 19 18 16 39 39 H 1.07994 * 120.00117 * 359.97438 * 21 20 14 40 40 H 1.08002 * 120.00060 * 180.22902 * 22 21 20 41 41 H 1.08001 * 119.99683 * 179.82982 * 23 22 21 42 42 H 1.08006 * 120.00135 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99638 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1285 1.4430 0.0586 5 6 1.4726 2.1759 1.1878 6 1 0.8093 3.0149 1.0379 7 6 1.8003 1.7760 2.4660 8 7 1.0526 2.1457 3.4827 9 14 3.3063 0.7088 2.7534 10 1 4.4933 1.5751 2.9670 11 1 3.0903 -0.1394 3.9530 12 1 3.5325 -0.1576 1.5688 13 7 1.6161 2.1117 -1.2371 14 6 2.7140 2.1610 -2.2118 15 6 3.2406 0.7459 -2.4588 16 6 2.2097 2.7425 -3.5074 17 8 2.6545 2.3494 -4.5598 18 8 1.2664 3.6974 -3.4923 19 6 0.7469 4.1312 -4.7769 20 6 3.8258 3.0239 -1.6730 21 6 3.5637 3.9478 -0.6787 22 6 4.5844 4.7365 -0.1817 23 6 5.8655 4.6070 -0.6846 24 6 6.1265 3.6868 -1.6826 25 6 5.1066 2.8953 -2.1769 26 1 -0.3632 0.4266 -0.9349 27 1 -0.3633 -1.0230 0.0981 28 1 -0.3633 0.5964 0.8369 29 1 1.8933 -0.5140 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.2830 1.8640 4.3819 32 1 0.8029 1.6625 -1.6307 33 1 2.4156 0.0974 -2.7534 34 1 3.9861 0.7692 -3.2537 35 1 3.6954 0.3629 -1.5453 36 1 1.5424 4.6107 -5.3474 37 1 0.3739 3.2680 -5.3282 38 1 -0.0656 4.8405 -4.6195 39 1 2.5621 4.0516 -0.2884 40 1 4.3804 5.4558 0.5977 41 1 6.6623 5.2252 -0.2981 42 1 7.1273 3.5859 -2.0758 43 1 5.3106 2.1761 -2.9563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:47 Heat of formation + Delta-G solvation = -62.319735 kcal Electronic energy + Delta-G solvation = -25004.980717 eV Core-core repulsion = 21629.122370 eV Total energy + Delta-G solvation = -3375.858347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04466 -40.25955 -38.51892 -37.54691 -35.33953 -33.65684 -31.91486 -31.05691 -29.96853 -28.95019 -28.22225 -25.82809 -24.53976 -23.32407 -23.15135 -21.51773 -20.66208 -19.14557 -18.36559 -17.97155 -17.49723 -17.12782 -16.60079 -16.27234 -15.64970 -15.45422 -15.15409 -15.09174 -14.63803 -14.55194 -14.36400 -14.17805 -13.95207 -13.82775 -13.45353 -13.15304 -12.99312 -12.94381 -12.80843 -12.60564 -12.33156 -12.26458 -12.04031 -11.78601 -11.74489 -11.50422 -11.47516 -11.24203 -11.12087 -10.37418 -9.73207 -9.59191 -9.14057 -8.18238 -6.07001 0.37531 0.61764 1.08860 1.33521 1.41243 1.44113 1.79745 2.41644 2.95229 3.11668 3.20792 3.60383 3.86829 3.96425 4.17809 4.23625 4.29773 4.34546 4.38752 4.41815 4.42844 4.56304 4.57287 4.65330 4.70172 4.74604 4.85259 4.98538 5.01231 5.12056 5.15181 5.26403 5.30257 5.34536 5.40258 5.59539 5.69747 5.75739 5.79159 5.84517 6.02887 6.20169 6.51347 6.73177 6.78416 6.95619 7.51489 8.98383 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.007758 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.952491 B = 3608.100376 C = 4601.949307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.156 4.156 3 C 0.203 3.797 4 H 0.026 0.974 5 C -0.471 4.471 6 H 0.042 0.958 7 C 0.030 3.970 8 N -0.936 5.936 9 Si 0.899 3.101 10 H -0.284 1.284 11 H -0.294 1.294 12 H -0.234 1.234 13 N -0.656 5.656 14 C 0.166 3.834 15 C -0.166 4.166 16 C 0.485 3.515 17 O -0.526 6.526 18 O -0.348 6.348 19 C 0.024 3.976 20 C -0.100 4.100 21 C -0.080 4.080 22 C -0.145 4.145 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.120 4.120 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.260 0.740 32 H 0.342 0.658 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 0.752 -14.120 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.195 4.195 3 C 0.094 3.906 4 H 0.043 0.957 5 C -0.510 4.510 6 H 0.061 0.939 7 C -0.168 4.168 8 N -0.577 5.577 9 Si 0.725 3.275 10 H -0.210 1.210 11 H -0.221 1.221 12 H -0.158 1.158 13 N -0.289 5.289 14 C 0.073 3.927 15 C -0.224 4.224 16 C 0.328 3.672 17 O -0.415 6.415 18 O -0.263 6.263 19 C -0.069 4.069 20 C -0.100 4.100 21 C -0.099 4.099 22 C -0.163 4.163 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.138 4.138 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.291 1.296 -14.053 15.451 hybrid contribution 0.317 -1.189 0.448 1.310 sum 6.608 0.107 -13.606 15.126 Atomic orbital electron populations 1.21538 0.95308 1.00374 1.01562 1.22574 0.97617 0.98913 1.00416 1.19359 0.94677 0.89227 0.87297 0.95664 1.20868 1.26864 1.14284 0.88947 0.93941 1.25369 0.98034 0.97181 0.96168 1.70109 1.38333 1.49298 0.99984 0.86610 0.82208 0.80144 0.78530 1.21039 1.22109 1.15757 1.60623 1.04846 1.59449 1.04026 1.19606 0.91581 0.94359 0.87163 1.22579 1.02819 0.93738 1.03293 1.23580 0.76350 0.76440 0.90808 1.90593 1.57227 1.60211 1.33440 1.86667 1.51482 1.51442 1.36703 1.23587 0.99990 1.01016 0.82284 1.19447 0.93475 0.98223 0.98881 1.21384 1.00760 0.93325 0.94383 1.21436 0.93785 1.00424 1.00672 1.21501 0.96638 0.98600 0.96600 1.21366 0.99769 0.96225 0.97608 1.21280 0.92119 1.00108 1.00288 0.92673 0.92996 0.93646 0.91969 0.93734 0.93119 0.83693 0.91059 0.90036 0.90904 0.91863 0.91519 0.85545 0.85522 0.85690 0.83549 0.83117 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 9.46 71.98 0.68 -4.15 16 2 C -0.16 -6.03 4.88 30.59 0.15 -5.88 16 3 C 0.20 8.60 0.36 44.16 0.02 8.62 16 4 H 0.03 1.13 4.35 -2.39 -0.01 1.12 16 5 C -0.47 -24.60 6.70 25.60 0.17 -24.43 16 6 H 0.04 2.53 8.06 -2.91 -0.02 2.50 16 7 C 0.03 1.66 5.32 84.66 0.45 2.11 16 8 N -0.94 -56.08 13.96 21.45 0.30 -55.78 16 9 Si 0.90 42.46 25.95 68.60 1.78 44.24 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.23 -10.03 5.50 99.48 0.55 -9.49 16 13 N -0.66 -24.72 4.64 -459.52 -2.13 -26.86 16 14 C 0.17 5.59 0.75 2.03 0.00 5.59 16 15 C -0.17 -4.92 6.11 71.98 0.44 -4.48 16 16 C 0.49 15.97 6.66 71.24 0.47 16.44 16 17 O -0.53 -17.82 15.72 21.98 0.35 -17.48 16 18 O -0.35 -10.91 10.26 -51.45 -0.53 -11.44 16 19 C 0.02 0.53 10.58 113.37 1.20 1.73 16 20 C -0.10 -3.47 3.73 -19.87 -0.07 -3.55 16 21 C -0.08 -3.07 8.34 22.27 0.19 -2.88 16 22 C -0.15 -4.85 10.05 22.27 0.22 -4.63 16 23 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 24 C -0.13 -3.44 10.05 22.27 0.22 -3.21 16 25 C -0.12 -3.57 9.15 22.27 0.20 -3.37 16 26 H 0.05 1.81 6.57 -2.39 -0.02 1.79 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 2.03 6.92 -2.39 -0.02 2.01 16 29 H 0.06 2.05 5.75 -2.39 -0.01 2.03 16 30 H 0.04 1.85 4.98 -2.38 -0.01 1.83 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.34 12.13 6.35 -89.70 -0.57 11.56 16 33 H 0.07 1.96 7.41 -2.39 -0.02 1.94 16 34 H 0.08 2.21 6.38 -2.38 -0.02 2.20 16 35 H 0.07 2.26 6.28 -2.39 -0.01 2.24 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.36 8.10 -2.38 -0.02 1.34 16 38 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.13 5.60 6.05 -2.91 -0.02 5.58 16 40 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 41 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.13 3.51 6.62 -2.91 -0.02 3.49 16 Total: -1.00 -64.19 333.16 4.63 -59.56 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.30 Total: 32.78 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 4.57 Total: -25.02 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.83 Total: -82.64 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.18 Total: -28.92 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.78 Total: 44.24 kcal Total: -64.19 4.63 -59.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.757 kcal (2) G-P(sol) polarization free energy of solvation -64.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds