Wall clock time and date at job start Tue Mar 31 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47406 * 2 1 4 4 H 1.08998 * 109.47027 * 58.14511 * 3 2 1 5 5 C 1.50700 * 109.47417 * 178.14843 * 3 2 1 6 6 H 1.08001 * 120.00236 * 119.99620 * 5 3 2 7 7 C 1.37878 * 119.99705 * 299.99802 * 5 3 2 8 8 N 1.31518 * 120.00147 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99874 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47002 * 90.00217 * 9 7 5 11 11 H 1.48504 * 109.46908 * 209.99489 * 9 7 5 12 12 H 1.48498 * 109.47419 * 330.00141 * 9 7 5 13 13 N 1.46905 * 109.46895 * 298.14714 * 3 2 1 14 14 C 1.46897 * 110.99978 * 118.88535 * 13 3 2 15 15 C 1.52998 * 109.47191 * 304.44824 * 14 13 3 16 16 C 1.50703 * 109.47065 * 184.45210 * 14 13 3 17 17 O 1.20825 * 120.00390 * 145.16156 * 16 14 13 18 18 O 1.34234 * 119.99725 * 325.15752 * 16 14 13 19 19 C 1.45199 * 116.99968 * 185.06754 * 18 16 14 20 20 C 1.50694 * 109.47118 * 64.45068 * 14 13 3 21 21 C 1.38235 * 120.00337 * 26.01419 * 20 14 13 22 22 C 1.38234 * 120.00110 * 179.76875 * 21 20 14 23 23 C 1.38237 * 120.00190 * 0.49916 * 22 21 20 24 24 C 1.38237 * 119.99828 * 359.74808 * 23 22 21 25 25 C 1.38237 * 120.00097 * 206.28209 * 20 14 13 26 26 H 1.09000 * 109.47137 * 293.36307 * 1 2 3 27 27 H 1.08997 * 109.47384 * 53.36067 * 1 2 3 28 28 H 1.09003 * 109.47147 * 173.36558 * 1 2 3 29 29 H 1.09000 * 109.46962 * 239.99679 * 2 1 3 30 30 H 1.09004 * 109.47551 * 120.00019 * 2 1 3 31 31 H 0.96996 * 119.99934 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99796 * 242.84320 * 13 3 2 33 33 H 1.09006 * 109.46810 * 54.09361 * 15 14 13 34 34 H 1.08992 * 109.47370 * 174.09141 * 15 14 13 35 35 H 1.08997 * 109.47248 * 294.09552 * 15 14 13 36 36 H 1.08998 * 109.47129 * 64.69194 * 19 18 16 37 37 H 1.09001 * 109.47378 * 184.69709 * 19 18 16 38 38 H 1.09004 * 109.47310 * 304.69856 * 19 18 16 39 39 H 1.08002 * 120.00051 * 359.97438 * 21 20 14 40 40 H 1.08000 * 120.00251 * 180.22781 * 22 21 20 41 41 H 1.07993 * 120.00475 * 179.73013 * 23 22 21 42 42 H 1.07995 * 120.00298 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.99648 * 0.02562 * 25 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6498 1.9658 0.8729 5 6 3.5463 1.4427 0.0459 6 1 4.1108 1.9016 -0.7523 7 6 4.2037 0.8570 1.1069 8 7 3.5162 0.2985 2.0792 9 14 6.0708 0.8566 1.1635 10 1 6.5450 2.0767 1.8649 11 1 6.5437 -0.3482 1.8917 12 1 6.6081 0.8411 -0.2208 13 7 1.5872 2.1219 -1.2213 14 6 0.7332 3.2725 -0.8977 15 6 -0.4355 2.8107 -0.0249 16 6 0.2007 3.8767 -2.1715 17 8 -0.9108 4.3498 -2.1973 18 8 0.9612 3.8893 -3.2775 19 6 0.4300 4.5867 -4.4349 20 6 1.5406 4.3034 -0.1519 21 6 2.9101 4.3687 -0.3281 22 6 3.6501 5.3174 0.3524 23 6 3.0219 6.1943 1.2170 24 6 1.6531 6.1258 1.3971 25 6 0.9124 5.1802 0.7126 26 1 -0.3633 0.4075 0.9434 27 1 -0.3634 0.6133 -0.8246 28 1 -0.3633 -1.0208 -0.1187 29 1 1.8932 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9788 -0.1139 2.8254 32 1 2.3714 2.4024 -1.7909 33 1 -0.0509 2.2804 0.8463 34 1 -1.0097 3.6776 0.3018 35 1 -1.0784 2.1451 -0.6008 36 1 0.3405 5.6494 -4.2094 37 1 1.1026 4.4503 -5.2818 38 1 -0.5522 4.1840 -4.6826 39 1 3.4016 3.6805 -0.9999 40 1 4.7196 5.3709 0.2120 41 1 3.6006 6.9327 1.7520 42 1 1.1623 6.8105 2.0728 43 1 -0.1569 5.1262 0.8539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:53 Heat of formation + Delta-G solvation = -46.843938 kcal Electronic energy + Delta-G solvation = -25071.885049 eV Core-core repulsion = 21696.697783 eV Total energy + Delta-G solvation = -3375.187266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.64051 -38.94191 -36.73444 -36.13737 -33.49243 -31.51679 -30.88809 -29.52508 -28.91576 -27.73465 -26.01368 -24.05135 -22.89727 -21.92170 -21.71584 -19.88270 -18.72716 -17.59687 -17.27043 -16.67261 -16.02215 -15.65018 -14.92053 -14.69863 -14.42428 -13.98827 -13.78813 -13.59953 -13.08131 -13.05249 -12.63008 -12.47385 -12.18567 -12.01890 -11.85270 -11.50551 -11.35355 -11.29805 -11.22100 -10.86627 -10.76297 -10.72254 -10.55645 -10.36009 -10.30295 -10.05051 -9.60111 -9.43603 -8.87457 -8.47174 -8.40450 -8.26790 -7.51925 -6.06372 -4.13689 1.69196 1.90142 2.55508 3.06441 3.24843 3.32800 3.34512 4.24783 4.35469 4.88212 5.02193 5.22364 5.23142 5.26868 5.29343 5.33754 5.40079 5.51226 5.57660 5.67097 5.89594 6.02693 6.14964 6.24643 6.38506 6.40539 6.48399 6.52623 6.56943 6.65555 6.73695 6.86422 6.95751 7.00374 7.05499 7.18684 7.42925 7.44575 7.45850 7.71763 7.93403 8.04974 8.10617 8.25950 8.52942 8.93502 9.51048 10.97699 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.007365 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.307126 B = 3800.609894 C = 4595.795283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.670 5.670 14 C 0.173 3.827 15 C -0.138 4.138 16 C 0.487 3.513 17 O -0.516 6.516 18 O -0.347 6.347 19 C 0.034 3.966 20 C -0.112 4.112 21 C -0.067 4.067 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.134 4.134 25 C -0.107 4.107 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.343 0.657 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.135 0.865 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 8.656 -5.478 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.303 5.303 14 C 0.079 3.921 15 C -0.195 4.195 16 C 0.330 3.670 17 O -0.403 6.403 18 O -0.263 6.263 19 C -0.060 4.060 20 C -0.114 4.114 21 C -0.085 4.085 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.152 4.152 25 C -0.125 4.125 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.163 0.837 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.153 0.847 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.557 8.239 -5.469 10.888 hybrid contribution 1.676 0.632 0.410 1.838 sum -2.880 8.871 -5.059 10.611 Atomic orbital electron populations 1.22121 0.99559 0.98951 1.00159 1.21527 0.91692 0.99230 1.01878 1.19262 0.93405 0.90935 0.85599 0.94931 1.21520 0.91273 1.37431 1.06497 0.92431 1.24844 0.97959 0.94959 0.95508 1.69869 1.35039 1.37173 1.09915 0.86674 0.86115 0.77551 0.78182 1.20755 1.21239 1.19849 1.61099 1.24938 1.21780 1.22486 1.19618 0.95645 0.89761 0.87078 1.22302 0.95668 1.01481 1.00025 1.23891 0.83215 0.75126 0.84775 1.90592 1.20595 1.44505 1.84630 1.86580 1.49034 1.69242 1.21443 1.23203 1.00301 0.96306 0.86201 1.20276 0.94637 0.97273 0.99188 1.21208 0.92927 0.95841 0.98502 1.21047 0.99621 0.95880 0.97520 1.21081 0.94723 0.99287 0.98598 1.20973 0.94256 0.99390 1.00598 1.21094 0.99875 0.95091 0.96484 0.94363 0.92616 0.95637 0.94592 0.89284 0.92871 0.83663 0.89204 0.92175 0.91051 0.92474 0.88411 0.92088 0.84734 0.86408 0.86766 0.86658 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.29 37.15 0.31 -2.66 16 2 C -0.10 -2.40 5.43 -26.74 -0.15 -2.55 16 3 C 0.21 4.91 1.16 -68.86 -0.08 4.83 16 4 H 0.03 0.83 5.38 -51.93 -0.28 0.55 16 5 C -0.53 -13.09 7.00 -34.44 -0.24 -13.33 16 6 H 0.06 1.39 6.24 -52.49 -0.33 1.07 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 8 N -0.88 -23.86 11.31 55.43 0.63 -23.23 16 9 Si 0.89 20.30 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.67 -13.41 5.11 -96.59 -0.49 -13.90 16 14 C 0.17 3.20 0.77 -133.91 -0.10 3.10 16 15 C -0.14 -2.46 5.76 37.16 0.21 -2.25 16 16 C 0.49 8.81 6.79 36.01 0.24 9.05 16 17 O -0.52 -9.84 15.88 -18.75 -0.30 -10.14 16 18 O -0.35 -5.69 9.93 -39.27 -0.39 -6.08 16 19 C 0.03 0.41 10.65 101.05 1.08 1.49 16 20 C -0.11 -2.06 3.86 -104.63 -0.40 -2.47 16 21 C -0.07 -1.24 7.85 -39.58 -0.31 -1.55 16 22 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 16 23 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 24 C -0.13 -2.08 10.05 -39.58 -0.40 -2.47 16 25 C -0.11 -1.82 9.14 -39.58 -0.36 -2.19 16 26 H 0.04 0.73 6.85 -51.93 -0.36 0.38 16 27 H 0.05 1.07 5.10 -51.93 -0.26 0.80 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.09 2.29 6.02 -51.93 -0.31 1.97 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.34 6.87 5.74 -39.29 -0.23 6.64 16 33 H 0.09 1.73 4.38 -51.93 -0.23 1.50 16 34 H 0.06 0.98 6.10 -51.93 -0.32 0.67 16 35 H 0.07 1.26 6.21 -51.93 -0.32 0.93 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.73 7.97 -51.93 -0.41 0.31 16 39 H 0.14 2.59 4.51 -52.49 -0.24 2.35 16 40 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.12 1.90 6.15 -52.49 -0.32 1.58 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -27.93 330.93 -7.38 -35.31 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.70 Total: 11.79 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.09 Total: -14.01 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.13 Total: -37.13 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.69 Total: -16.22 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.93 -7.38 -35.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.532 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds