Wall clock time and date at job start Tue Mar 31 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47406 * 2 1 4 4 H 1.08998 * 109.47027 * 58.14511 * 3 2 1 5 5 C 1.50700 * 109.47417 * 178.14843 * 3 2 1 6 6 H 1.08001 * 120.00236 * 119.99620 * 5 3 2 7 7 C 1.37878 * 119.99705 * 299.99802 * 5 3 2 8 8 N 1.31518 * 120.00147 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99874 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47002 * 90.00217 * 9 7 5 11 11 H 1.48504 * 109.46908 * 209.99489 * 9 7 5 12 12 H 1.48498 * 109.47419 * 330.00141 * 9 7 5 13 13 N 1.46905 * 109.46895 * 298.14714 * 3 2 1 14 14 C 1.46897 * 110.99978 * 118.88535 * 13 3 2 15 15 C 1.52998 * 109.47191 * 304.44824 * 14 13 3 16 16 C 1.50703 * 109.47065 * 184.45210 * 14 13 3 17 17 O 1.20825 * 120.00390 * 145.16156 * 16 14 13 18 18 O 1.34234 * 119.99725 * 325.15752 * 16 14 13 19 19 C 1.45199 * 116.99968 * 185.06754 * 18 16 14 20 20 C 1.50694 * 109.47118 * 64.45068 * 14 13 3 21 21 C 1.38235 * 120.00337 * 26.01419 * 20 14 13 22 22 C 1.38234 * 120.00110 * 179.76875 * 21 20 14 23 23 C 1.38237 * 120.00190 * 0.49916 * 22 21 20 24 24 C 1.38237 * 119.99828 * 359.74808 * 23 22 21 25 25 C 1.38237 * 120.00097 * 206.28209 * 20 14 13 26 26 H 1.09000 * 109.47137 * 293.36307 * 1 2 3 27 27 H 1.08997 * 109.47384 * 53.36067 * 1 2 3 28 28 H 1.09003 * 109.47147 * 173.36558 * 1 2 3 29 29 H 1.09000 * 109.46962 * 239.99679 * 2 1 3 30 30 H 1.09004 * 109.47551 * 120.00019 * 2 1 3 31 31 H 0.96996 * 119.99934 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99796 * 242.84320 * 13 3 2 33 33 H 1.09006 * 109.46810 * 54.09361 * 15 14 13 34 34 H 1.08992 * 109.47370 * 174.09141 * 15 14 13 35 35 H 1.08997 * 109.47248 * 294.09552 * 15 14 13 36 36 H 1.08998 * 109.47129 * 64.69194 * 19 18 16 37 37 H 1.09001 * 109.47378 * 184.69709 * 19 18 16 38 38 H 1.09004 * 109.47310 * 304.69856 * 19 18 16 39 39 H 1.08002 * 120.00051 * 359.97438 * 21 20 14 40 40 H 1.08000 * 120.00251 * 180.22781 * 22 21 20 41 41 H 1.07993 * 120.00475 * 179.73013 * 23 22 21 42 42 H 1.07995 * 120.00298 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.99648 * 0.02562 * 25 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6498 1.9658 0.8729 5 6 3.5463 1.4427 0.0459 6 1 4.1108 1.9016 -0.7523 7 6 4.2037 0.8570 1.1069 8 7 3.5162 0.2985 2.0792 9 14 6.0708 0.8566 1.1635 10 1 6.5450 2.0767 1.8649 11 1 6.5437 -0.3482 1.8917 12 1 6.6081 0.8411 -0.2208 13 7 1.5872 2.1219 -1.2213 14 6 0.7332 3.2725 -0.8977 15 6 -0.4355 2.8107 -0.0249 16 6 0.2007 3.8767 -2.1715 17 8 -0.9108 4.3498 -2.1973 18 8 0.9612 3.8893 -3.2775 19 6 0.4300 4.5867 -4.4349 20 6 1.5406 4.3034 -0.1519 21 6 2.9101 4.3687 -0.3281 22 6 3.6501 5.3174 0.3524 23 6 3.0219 6.1943 1.2170 24 6 1.6531 6.1258 1.3971 25 6 0.9124 5.1802 0.7126 26 1 -0.3633 0.4075 0.9434 27 1 -0.3634 0.6133 -0.8246 28 1 -0.3633 -1.0208 -0.1187 29 1 1.8932 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9788 -0.1139 2.8254 32 1 2.3714 2.4024 -1.7909 33 1 -0.0509 2.2804 0.8463 34 1 -1.0097 3.6776 0.3018 35 1 -1.0784 2.1451 -0.6008 36 1 0.3405 5.6494 -4.2094 37 1 1.1026 4.4503 -5.2818 38 1 -0.5522 4.1840 -4.6826 39 1 3.4016 3.6805 -0.9999 40 1 4.7196 5.3709 0.2120 41 1 3.6006 6.9327 1.7520 42 1 1.1623 6.8105 2.0728 43 1 -0.1569 5.1262 0.8539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:52 Heat of formation + Delta-G solvation = -61.629726 kcal Electronic energy + Delta-G solvation = -25072.526209 eV Core-core repulsion = 21696.697783 eV Total energy + Delta-G solvation = -3375.828426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.02922 -40.28272 -38.22813 -37.51605 -35.21274 -33.31273 -32.29276 -30.98287 -30.33727 -28.85545 -27.77560 -25.51385 -24.61181 -23.23358 -23.07215 -21.44676 -20.30299 -19.26916 -18.63189 -18.06350 -17.44938 -17.06381 -16.70950 -16.11376 -15.84106 -15.53810 -15.15833 -14.99550 -14.59362 -14.39537 -14.10649 -13.88344 -13.58549 -13.52158 -13.09168 -13.03131 -12.98773 -12.92887 -12.88784 -12.60089 -12.45520 -12.12004 -11.99352 -11.76837 -11.69259 -11.61176 -11.38723 -11.14490 -10.72405 -10.38597 -9.73162 -9.61111 -9.18775 -8.02820 -6.14610 0.38816 0.59658 1.15625 1.42041 1.45418 1.52452 1.81736 2.45593 2.94338 3.23309 3.41351 3.66479 3.90541 3.95566 4.20712 4.24853 4.31780 4.32100 4.34598 4.58875 4.62334 4.69465 4.72687 4.74944 4.83014 4.92539 4.99643 5.09970 5.13975 5.18326 5.24202 5.34780 5.48776 5.56031 5.61767 5.63532 5.69252 5.73678 5.80543 6.06390 6.16716 6.28291 6.39319 6.65370 6.79138 7.05281 7.52556 8.99850 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.007365 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.307126 B = 3800.609894 C = 4595.795283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C 0.229 3.771 4 H 0.009 0.991 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.025 3.975 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.665 5.665 14 C 0.170 3.830 15 C -0.132 4.132 16 C 0.490 3.510 17 O -0.529 6.529 18 O -0.357 6.357 19 C 0.026 3.974 20 C -0.128 4.128 21 C -0.089 4.089 22 C -0.135 4.135 23 C -0.118 4.118 24 C -0.132 4.132 25 C -0.121 4.121 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.258 0.742 32 H 0.342 0.658 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 10.175 -5.914 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.141 4.141 3 C 0.122 3.878 4 H 0.027 0.973 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.175 4.175 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.192 1.192 13 N -0.298 5.298 14 C 0.077 3.923 15 C -0.189 4.189 16 C 0.334 3.666 17 O -0.418 6.418 18 O -0.272 6.272 19 C -0.067 4.067 20 C -0.130 4.130 21 C -0.107 4.107 22 C -0.153 4.153 23 C -0.136 4.136 24 C -0.150 4.150 25 C -0.139 4.139 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.492 9.770 -5.933 12.282 hybrid contribution 1.645 0.241 0.482 1.731 sum -2.846 10.011 -5.452 11.749 Atomic orbital electron populations 1.21980 0.97034 1.00076 1.00474 1.21405 0.93964 0.98863 0.99884 1.18944 0.92339 0.90786 0.85780 0.97295 1.21815 0.92499 1.36314 1.06104 0.92297 1.25484 1.01402 0.95115 0.95526 1.69999 1.36204 1.38354 1.10464 0.85822 0.82060 0.77173 0.78203 1.20534 1.21671 1.19209 1.60992 1.24786 1.22883 1.21110 1.19630 0.95387 0.89404 0.87883 1.22216 0.95527 1.01870 0.99248 1.23668 0.82999 0.74896 0.85082 1.90577 1.21019 1.45272 1.84937 1.86551 1.49134 1.69529 1.22017 1.23566 1.01301 0.96319 0.85494 1.20318 0.94689 0.97922 1.00045 1.21198 0.93313 0.96764 0.99413 1.21328 1.00438 0.95878 0.97696 1.21475 0.95097 0.99189 0.97829 1.21384 0.94429 0.99020 1.00144 1.21328 1.00643 0.95410 0.96534 0.94255 0.91972 0.94138 0.95585 0.92113 0.93238 0.83782 0.90873 0.90804 0.90982 0.91813 0.85171 0.91916 0.86196 0.85103 0.83564 0.83474 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 8.29 71.98 0.60 -4.83 16 2 C -0.10 -4.78 5.43 30.59 0.17 -4.61 16 3 C 0.23 10.65 1.16 44.17 0.05 10.70 16 4 H 0.01 0.48 5.38 -2.39 -0.01 0.47 16 5 C -0.53 -26.51 7.00 25.60 0.18 -26.33 16 6 H 0.06 2.88 6.24 -2.91 -0.02 2.86 16 7 C 0.02 1.28 5.30 84.65 0.45 1.73 16 8 N -0.91 -50.27 11.31 21.45 0.24 -50.03 16 9 Si 0.94 41.86 29.54 68.60 2.03 43.88 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 N -0.66 -26.81 5.11 -459.51 -2.35 -29.16 16 14 C 0.17 6.28 0.77 2.03 0.00 6.28 16 15 C -0.13 -4.67 5.76 71.98 0.41 -4.25 16 16 C 0.49 17.36 6.79 71.24 0.48 17.85 16 17 O -0.53 -19.64 15.88 21.97 0.35 -19.29 16 18 O -0.36 -11.33 9.93 -51.46 -0.51 -11.84 16 19 C 0.03 0.59 10.65 113.37 1.21 1.79 16 20 C -0.13 -4.68 3.86 -19.87 -0.08 -4.76 16 21 C -0.09 -3.29 7.85 22.27 0.17 -3.12 16 22 C -0.14 -4.44 10.05 22.27 0.22 -4.22 16 23 C -0.12 -3.36 10.05 22.27 0.22 -3.14 16 24 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 25 C -0.12 -3.97 9.14 22.27 0.20 -3.76 16 26 H 0.04 1.51 6.85 -2.39 -0.02 1.49 16 27 H 0.06 2.34 5.10 -2.39 -0.01 2.33 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 3.20 6.02 -2.38 -0.01 3.19 16 31 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.34 13.86 5.74 -89.69 -0.51 13.35 16 33 H 0.07 2.84 4.38 -2.38 -0.01 2.83 16 34 H 0.07 2.36 6.10 -2.39 -0.01 2.35 16 35 H 0.07 2.49 6.21 -2.39 -0.01 2.48 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.13 2.03 8.14 -2.39 -0.02 2.02 16 38 H 0.06 1.39 7.97 -2.38 -0.02 1.37 16 39 H 0.12 4.70 4.51 -2.91 -0.01 4.68 16 40 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 41 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 42 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 43 H 0.13 3.92 6.15 -2.91 -0.02 3.90 16 Total: -1.00 -59.75 330.93 4.81 -54.95 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.52 Total: 35.69 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 4.52 Total: -24.21 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -2.10 Total: -79.18 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.16 Total: -31.13 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -59.75 4.81 -54.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.683 kcal (2) G-P(sol) polarization free energy of solvation -59.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds