Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 H 1.09004 * 109.47355 * 175.66350 * 3 2 1 5 5 C 1.50703 * 109.46667 * 55.66512 * 3 2 1 6 6 H 1.07998 * 119.99958 * 239.99890 * 5 3 2 7 7 C 1.37877 * 120.00049 * 60.00018 * 5 3 2 8 8 N 1.31515 * 120.00096 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00231 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47266 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46910 * 300.00092 * 9 7 5 12 12 H 1.48493 * 109.46982 * 60.00083 * 9 7 5 13 13 N 1.46895 * 109.47611 * 295.66720 * 3 2 1 14 14 C 1.46905 * 111.00025 * 273.95467 * 13 3 2 15 15 C 1.52998 * 109.46949 * 176.16856 * 14 13 3 16 16 C 1.53007 * 109.46683 * 179.97438 * 15 14 13 17 17 H 1.08991 * 109.70124 * 305.00349 * 16 15 14 18 18 C 1.53473 * 109.70385 * 184.42170 * 16 15 14 19 19 O 1.43170 * 108.23432 * 180.61577 * 18 16 15 20 20 C 1.36106 * 116.72576 * 46.17888 * 19 18 16 21 21 C 1.38700 * 119.38987 * 162.84675 * 20 19 18 22 22 C 1.38200 * 120.06927 * 179.85883 * 21 20 19 23 23 C 1.38256 * 120.10708 * 359.96952 * 22 21 20 24 24 C 1.38194 * 120.11646 * 0.05724 * 23 22 21 25 25 C 1.38702 * 120.06574 * 0.02562 * 24 23 22 26 26 O 1.36113 * 119.39620 * 179.80528 * 25 24 23 27 27 H 1.08998 * 109.47038 * 185.25628 * 1 2 3 28 28 H 1.08996 * 109.47221 * 305.26180 * 1 2 3 29 29 H 1.09007 * 109.47082 * 65.26024 * 1 2 3 30 30 H 1.09001 * 109.47222 * 240.00264 * 2 1 3 31 31 H 1.08997 * 109.47167 * 120.00332 * 2 1 3 32 32 H 0.97001 * 120.00323 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99900 * 37.90184 * 13 3 2 34 34 H 1.09000 * 109.47004 * 296.17064 * 14 13 3 35 35 H 1.09009 * 109.46664 * 56.16873 * 14 13 3 36 36 H 1.09000 * 109.47437 * 299.99942 * 15 14 13 37 37 H 1.08993 * 109.47135 * 60.00283 * 15 14 13 38 38 H 1.09000 * 109.70997 * 300.24479 * 18 16 15 39 39 H 1.08996 * 109.71237 * 60.87656 * 18 16 15 40 40 H 1.08004 * 119.96657 * 359.84086 * 21 20 19 41 41 H 1.07994 * 119.94954 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.94277 * 180.02562 * 23 22 21 43 43 H 1.08005 * 119.96627 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 0.0777 5 6 1.4519 2.1832 1.1733 6 1 0.8404 3.0579 1.0082 7 6 1.6944 1.7440 2.4576 8 7 2.4386 0.6785 2.6587 9 14 0.9660 2.6625 3.9120 10 1 1.3731 1.9939 5.1739 11 1 1.4616 4.0624 3.9119 12 1 -0.5152 2.6617 3.8063 13 7 1.6377 2.1042 -1.2482 14 6 2.6136 1.8508 -2.3167 15 6 2.1142 2.4737 -3.6218 16 6 3.1310 2.2103 -4.7344 17 1 4.1121 2.5739 -4.4292 18 6 2.6900 2.9260 -6.0184 19 8 3.6535 2.6472 -7.0401 20 6 4.0489 1.3515 -7.1715 21 6 4.6841 0.9485 -8.3367 22 6 5.0941 -0.3630 -8.4838 23 6 4.8729 -1.2767 -7.4700 24 6 4.2400 -0.8818 -6.3067 25 6 3.8245 0.4326 -6.1534 26 8 3.1989 0.8057 -5.0036 27 1 -0.3633 -1.0233 0.0941 28 1 -0.3633 0.5933 0.8391 29 1 -0.3633 0.4301 -0.9334 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.6090 0.3694 3.5622 33 1 0.7121 1.8161 -1.5282 34 1 3.5720 2.2938 -2.0459 35 1 2.7350 0.7757 -2.4502 36 1 1.1558 2.0307 -3.8925 37 1 1.9928 3.5486 -3.4882 38 1 1.7115 2.5581 -6.3268 39 1 2.6406 4.0004 -5.8419 40 1 4.8583 1.6604 -9.1301 41 1 5.5882 -0.6748 -9.3921 42 1 5.1947 -2.3009 -7.5876 43 1 4.0687 -1.5975 -5.5161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -56.536719 kcal Electronic energy + Delta-G solvation = -23093.408731 eV Core-core repulsion = 19717.801155 eV Total energy + Delta-G solvation = -3375.607577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36920 -38.03046 -37.40601 -36.60721 -33.93000 -31.98498 -30.82818 -30.52846 -29.08308 -27.56584 -25.88826 -24.06394 -23.18287 -22.85274 -21.59671 -20.70026 -19.26517 -18.81785 -17.60836 -16.93529 -16.07519 -15.45472 -15.30789 -14.99287 -14.76056 -14.71397 -14.53044 -14.09688 -13.95953 -13.58545 -13.18942 -13.01021 -12.52627 -12.46606 -12.09331 -11.97103 -11.64477 -11.52705 -11.31623 -11.13195 -10.88918 -10.78558 -10.75436 -10.51270 -10.36635 -9.91364 -9.71420 -9.54562 -8.97033 -8.79321 -8.32796 -8.18383 -7.20640 -5.95925 -3.97903 1.14130 1.17414 2.91325 3.10750 3.34653 3.39136 3.42054 3.58255 4.05308 4.42874 4.49102 4.68181 4.69056 4.83775 5.01233 5.10730 5.19521 5.24946 5.31965 5.35357 5.47552 5.59340 5.71440 5.79878 5.94936 5.99790 6.06493 6.29951 6.33291 6.38728 6.41840 6.46745 6.50350 6.59453 6.83864 6.92721 7.29365 7.30723 7.33887 7.52981 7.72486 7.89806 8.30340 8.55726 8.63503 9.07417 9.65681 11.11019 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.003004 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.794567 B = 9319.801505 C = 9807.412031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.289 1.289 11 H -0.278 1.278 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.062 3.938 15 C -0.108 4.108 16 C 0.055 3.945 17 H 0.086 0.914 18 C 0.027 3.973 19 O -0.310 6.310 20 C 0.046 3.954 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.116 4.116 25 C 0.058 3.942 26 O -0.298 6.298 27 H 0.023 0.977 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.011 0.989 31 H 0.093 0.907 32 H 0.259 0.741 33 H 0.325 0.675 34 H 0.063 0.937 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -0.721 -20.832 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.215 1.215 11 H -0.204 1.204 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.002 4.002 17 H 0.104 0.896 18 C -0.049 4.049 19 O -0.224 6.224 20 C 0.001 3.999 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.135 4.135 24 C -0.135 4.135 25 C 0.013 3.987 26 O -0.213 6.213 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.183 -0.160 -20.443 20.690 hybrid contribution -0.597 -0.453 0.744 1.056 sum 2.586 -0.612 -19.700 19.878 Atomic orbital electron populations 1.21595 0.97742 0.98702 1.00665 1.22095 0.94936 1.01167 1.00333 1.19183 0.95800 0.88552 0.85631 0.95085 1.21039 1.30650 1.11488 0.89658 0.92096 1.24923 0.95544 0.95174 0.98765 1.69874 1.38736 1.23807 1.21191 0.86626 0.79457 0.79941 0.81746 1.21520 1.20361 1.20385 1.60893 1.03888 1.63151 1.03754 1.21828 0.97116 0.97813 0.90086 1.21642 0.97163 1.02752 0.93030 1.23270 1.01820 0.79629 0.95512 0.89565 1.23730 0.91479 1.02837 0.86826 1.86279 1.58559 1.22842 1.54746 1.18965 1.01863 0.84311 0.94739 1.20423 1.01203 0.96623 0.95268 1.20881 1.01311 0.92331 0.99563 1.20917 0.99591 0.99964 0.93053 1.20526 0.99956 0.93653 0.99373 1.19035 0.98996 0.94508 0.86195 1.86409 1.72939 1.25198 1.36737 0.95763 0.91268 0.95454 0.97020 0.88885 0.93064 0.85678 0.91863 0.95424 0.91012 0.88774 0.90497 0.85846 0.85045 0.85275 0.85196 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.40 37.16 0.35 -2.43 16 2 C -0.15 -3.46 5.52 -26.73 -0.15 -3.61 16 3 C 0.22 5.35 2.33 -68.87 -0.16 5.19 16 4 H 0.03 0.86 7.83 -51.93 -0.41 0.45 16 5 C -0.49 -13.24 7.28 -34.44 -0.25 -13.49 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -25.42 11.37 55.43 0.63 -24.79 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.69 -14.27 6.26 -107.95 -0.68 -14.95 16 14 C 0.06 1.09 5.38 -3.82 -0.02 1.07 16 15 C -0.11 -1.44 5.17 -26.73 -0.14 -1.58 16 16 C 0.05 0.69 3.02 -26.48 -0.08 0.61 16 17 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.03 0.29 6.56 37.40 0.25 0.53 16 19 O -0.31 -3.91 10.42 -32.86 -0.34 -4.25 16 20 C 0.05 0.59 6.49 -39.14 -0.25 0.34 16 21 C -0.12 -1.24 9.96 -39.42 -0.39 -1.63 16 22 C -0.12 -1.12 10.04 -39.59 -0.40 -1.52 16 23 C -0.12 -1.13 10.04 -39.59 -0.40 -1.53 16 24 C -0.12 -1.39 9.96 -39.43 -0.39 -1.79 16 25 C 0.06 0.80 6.49 -39.14 -0.25 0.54 16 26 O -0.30 -4.41 9.65 -32.88 -0.32 -4.72 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.62 6.89 -51.93 -0.36 1.26 16 29 H 0.03 0.52 6.61 -51.93 -0.34 0.18 16 30 H 0.01 0.25 7.39 -51.93 -0.38 -0.13 16 31 H 0.09 2.48 6.20 -51.93 -0.32 2.15 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.33 6.45 6.54 -39.29 -0.26 6.19 16 34 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.03 0.53 7.09 -51.92 -0.37 0.16 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 345.39 15.07 5.20 5.20 Total: -1.00 -29.75 345.39 -9.54 -39.29 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.63 Total: 5.75 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.39 Total: -17.83 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: -0.05 Total: -39.74 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.66 Total: -8.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.75 -9.54 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.247 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds