Wall clock time and date at job start Tue Mar 31 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 H 1.09004 * 109.47355 * 175.66350 * 3 2 1 5 5 C 1.50703 * 109.46667 * 55.66512 * 3 2 1 6 6 H 1.07998 * 119.99958 * 239.99890 * 5 3 2 7 7 C 1.37877 * 120.00049 * 60.00018 * 5 3 2 8 8 N 1.31515 * 120.00096 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00231 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47266 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46910 * 300.00092 * 9 7 5 12 12 H 1.48493 * 109.46982 * 60.00083 * 9 7 5 13 13 N 1.46895 * 109.47611 * 295.66720 * 3 2 1 14 14 C 1.46905 * 111.00025 * 273.95467 * 13 3 2 15 15 C 1.52998 * 109.46949 * 176.16856 * 14 13 3 16 16 C 1.53007 * 109.46683 * 179.97438 * 15 14 13 17 17 H 1.08991 * 109.70124 * 305.00349 * 16 15 14 18 18 C 1.53473 * 109.70385 * 184.42170 * 16 15 14 19 19 O 1.43170 * 108.23432 * 180.61577 * 18 16 15 20 20 C 1.36106 * 116.72576 * 46.17888 * 19 18 16 21 21 C 1.38700 * 119.38987 * 162.84675 * 20 19 18 22 22 C 1.38200 * 120.06927 * 179.85883 * 21 20 19 23 23 C 1.38256 * 120.10708 * 359.96952 * 22 21 20 24 24 C 1.38194 * 120.11646 * 0.05724 * 23 22 21 25 25 C 1.38702 * 120.06574 * 0.02562 * 24 23 22 26 26 O 1.36113 * 119.39620 * 179.80528 * 25 24 23 27 27 H 1.08998 * 109.47038 * 185.25628 * 1 2 3 28 28 H 1.08996 * 109.47221 * 305.26180 * 1 2 3 29 29 H 1.09007 * 109.47082 * 65.26024 * 1 2 3 30 30 H 1.09001 * 109.47222 * 240.00264 * 2 1 3 31 31 H 1.08997 * 109.47167 * 120.00332 * 2 1 3 32 32 H 0.97001 * 120.00323 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99900 * 37.90184 * 13 3 2 34 34 H 1.09000 * 109.47004 * 296.17064 * 14 13 3 35 35 H 1.09009 * 109.46664 * 56.16873 * 14 13 3 36 36 H 1.09000 * 109.47437 * 299.99942 * 15 14 13 37 37 H 1.08993 * 109.47135 * 60.00283 * 15 14 13 38 38 H 1.09000 * 109.70997 * 300.24479 * 18 16 15 39 39 H 1.08996 * 109.71237 * 60.87656 * 18 16 15 40 40 H 1.08004 * 119.96657 * 359.84086 * 21 20 19 41 41 H 1.07994 * 119.94954 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.94277 * 180.02562 * 23 22 21 43 43 H 1.08005 * 119.96627 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 0.0777 5 6 1.4519 2.1832 1.1733 6 1 0.8404 3.0579 1.0082 7 6 1.6944 1.7440 2.4576 8 7 2.4386 0.6785 2.6587 9 14 0.9660 2.6625 3.9120 10 1 1.3731 1.9939 5.1739 11 1 1.4616 4.0624 3.9119 12 1 -0.5152 2.6617 3.8063 13 7 1.6377 2.1042 -1.2482 14 6 2.6136 1.8508 -2.3167 15 6 2.1142 2.4737 -3.6218 16 6 3.1310 2.2103 -4.7344 17 1 4.1121 2.5739 -4.4292 18 6 2.6900 2.9260 -6.0184 19 8 3.6535 2.6472 -7.0401 20 6 4.0489 1.3515 -7.1715 21 6 4.6841 0.9485 -8.3367 22 6 5.0941 -0.3630 -8.4838 23 6 4.8729 -1.2767 -7.4700 24 6 4.2400 -0.8818 -6.3067 25 6 3.8245 0.4326 -6.1534 26 8 3.1989 0.8057 -5.0036 27 1 -0.3633 -1.0233 0.0941 28 1 -0.3633 0.5933 0.8391 29 1 -0.3633 0.4301 -0.9334 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.6090 0.3694 3.5622 33 1 0.7121 1.8161 -1.5282 34 1 3.5720 2.2938 -2.0459 35 1 2.7350 0.7757 -2.4502 36 1 1.1558 2.0307 -3.8925 37 1 1.9928 3.5486 -3.4882 38 1 1.7115 2.5581 -6.3268 39 1 2.6406 4.0004 -5.8419 40 1 4.8583 1.6604 -9.1301 41 1 5.5882 -0.6748 -9.3921 42 1 5.1947 -2.3009 -7.5876 43 1 4.0687 -1.5975 -5.5161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:16 Heat of formation + Delta-G solvation = -74.272232 kcal Electronic energy + Delta-G solvation = -23094.177801 eV Core-core repulsion = 19717.801155 eV Total energy + Delta-G solvation = -3376.376646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.27346 -39.01411 -38.42351 -38.16244 -35.40234 -33.71183 -32.12506 -31.61193 -30.14687 -28.93742 -27.55426 -25.40617 -24.82589 -23.75315 -22.87533 -21.64935 -21.14848 -19.76471 -18.49035 -18.16614 -17.75369 -16.76644 -16.59411 -16.25214 -16.15539 -15.79381 -15.54664 -15.31596 -15.08981 -14.83681 -14.53983 -14.46361 -14.28586 -13.74101 -13.59514 -13.05215 -12.82433 -12.77634 -12.74125 -12.46255 -12.43454 -12.39944 -12.12159 -11.89312 -11.84032 -11.62302 -11.44561 -11.27121 -10.95141 -10.43483 -9.63948 -9.07223 -8.96503 -8.05493 -6.14869 0.30488 0.33387 1.44589 1.45654 1.53118 2.02705 2.24209 2.45712 2.75126 3.10927 3.23070 3.48907 3.66391 3.76912 4.02750 4.14341 4.16364 4.22748 4.35522 4.40905 4.45282 4.49855 4.53428 4.58776 4.60347 4.71376 4.73832 4.87983 5.05249 5.09351 5.12914 5.21807 5.23762 5.35600 5.41022 5.51620 5.68095 5.72437 5.73498 5.82956 5.94821 6.30623 6.42529 6.65567 6.84431 6.97989 7.53127 8.99982 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.003004 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.794567 B = 9319.801505 C = 9807.412031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.139 4.139 3 C 0.221 3.779 4 H -0.009 1.009 5 C -0.501 4.501 6 H 0.056 0.944 7 C 0.011 3.989 8 N -0.923 5.923 9 Si 0.955 3.045 10 H -0.288 1.288 11 H -0.275 1.275 12 H -0.269 1.269 13 N -0.684 5.684 14 C 0.066 3.934 15 C -0.093 4.093 16 C 0.054 3.946 17 H 0.078 0.922 18 C 0.030 3.970 19 O -0.319 6.319 20 C 0.026 3.974 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.135 4.135 25 C 0.028 3.972 26 O -0.323 6.323 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.061 0.939 32 H 0.259 0.741 33 H 0.334 0.666 34 H 0.050 0.950 35 H 0.010 0.990 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -0.297 -22.753 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 C 0.112 3.888 4 H 0.009 0.991 5 C -0.540 4.540 6 H 0.074 0.926 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.781 3.219 10 H -0.214 1.214 11 H -0.200 1.200 12 H -0.194 1.194 13 N -0.315 5.315 14 C -0.064 4.064 15 C -0.131 4.131 16 C -0.002 4.002 17 H 0.096 0.904 18 C -0.045 4.045 19 O -0.234 6.234 20 C -0.019 4.019 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.017 4.017 26 O -0.239 6.239 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.152 0.848 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.183 0.817 42 H 0.177 0.823 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.565 0.270 -22.388 22.536 hybrid contribution -0.324 -0.647 1.262 1.454 sum 2.242 -0.377 -21.126 21.248 Atomic orbital electron populations 1.21474 0.95636 0.99683 1.00964 1.21945 0.96731 1.00108 0.99100 1.18935 0.93272 0.89426 0.87128 0.99057 1.21277 1.30551 1.11460 0.90703 0.92557 1.25655 0.95875 0.95882 1.01293 1.70020 1.39756 1.25044 1.21556 0.85663 0.79062 0.78682 0.78528 1.21388 1.20008 1.19439 1.60764 1.04874 1.62540 1.03366 1.21803 0.96158 0.97123 0.91318 1.21499 0.97426 1.03477 0.90663 1.23244 1.01200 0.79429 0.96369 0.90379 1.23849 0.91242 1.04166 0.85220 1.86253 1.59099 1.22905 1.55159 1.19263 1.02848 0.84327 0.95442 1.20806 1.00490 0.97801 0.94963 1.21333 0.99922 0.91457 1.00432 1.21301 0.98218 1.01530 0.92063 1.20769 1.00831 0.93246 1.00528 1.19349 1.00512 0.95524 0.86350 1.86350 1.73623 1.26186 1.37746 0.93978 0.93345 0.93117 0.96275 0.92018 0.93206 0.84772 0.93127 0.97134 0.90246 0.86864 0.89913 0.83026 0.83244 0.81736 0.82346 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.40 71.98 0.68 -4.39 16 2 C -0.14 -6.72 5.52 30.59 0.17 -6.55 16 3 C 0.22 11.25 2.33 44.17 0.10 11.35 16 4 H -0.01 -0.49 7.83 -2.39 -0.02 -0.51 16 5 C -0.50 -27.44 7.28 25.60 0.19 -27.26 16 6 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.61 5.30 84.65 0.45 1.05 16 8 N -0.92 -53.58 11.37 21.45 0.24 -53.33 16 9 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 N -0.68 -28.58 6.26 -495.43 -3.10 -31.68 16 14 C 0.07 2.37 5.38 86.30 0.46 2.83 16 15 C -0.09 -2.41 5.17 30.60 0.16 -2.25 16 16 C 0.05 1.37 3.02 30.76 0.09 1.46 16 17 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 18 C 0.03 0.60 6.56 72.14 0.47 1.08 16 19 O -0.32 -7.75 10.42 -82.54 -0.86 -8.61 16 20 C 0.03 0.65 6.49 22.56 0.15 0.80 16 21 C -0.12 -2.37 9.96 22.37 0.22 -2.15 16 22 C -0.11 -1.76 10.04 22.26 0.22 -1.53 16 23 C -0.11 -1.96 10.04 22.26 0.22 -1.74 16 24 C -0.14 -3.22 9.96 22.37 0.22 -3.00 16 25 C 0.03 0.76 6.49 22.56 0.15 0.91 16 26 O -0.32 -9.79 9.65 -82.61 -0.80 -10.59 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 2.24 6.89 -2.39 -0.02 2.22 16 29 H 0.05 1.87 6.61 -2.38 -0.02 1.85 16 30 H 0.02 0.86 7.39 -2.39 -0.02 0.84 16 31 H 0.06 3.38 6.20 -2.39 -0.01 3.37 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.33 12.93 6.54 -89.69 -0.59 12.34 16 34 H 0.05 1.92 8.13 -2.39 -0.02 1.91 16 35 H 0.01 0.41 7.09 -2.38 -0.02 0.40 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -65.83 345.39 1.88 -63.95 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.41 Total: 23.75 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.96 Total: -29.39 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.86 Total: -85.01 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -1.66 Total: -19.19 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.83 1.88 -63.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.322 kcal (2) G-P(sol) polarization free energy of solvation -65.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds