Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47035 * 2 1 4 4 H 1.08996 * 109.47104 * 175.53155 * 3 2 1 5 5 C 1.50703 * 109.47046 * 55.53448 * 3 2 1 6 6 H 1.07996 * 119.99849 * 239.99729 * 5 3 2 7 7 C 1.37876 * 120.00052 * 59.99590 * 5 3 2 8 8 N 1.31516 * 120.00126 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00232 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46926 * 270.00054 * 9 7 5 11 11 H 1.48504 * 109.46752 * 29.99872 * 9 7 5 12 12 H 1.48494 * 109.47244 * 149.99696 * 9 7 5 13 13 N 1.46900 * 109.47363 * 295.53128 * 3 2 1 14 14 C 1.46896 * 111.00161 * 273.92045 * 13 3 2 15 15 C 1.52993 * 109.46948 * 176.17963 * 14 13 3 16 16 C 1.53002 * 109.47160 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.70939 * 54.99517 * 16 15 14 18 18 C 1.53469 * 109.71082 * 175.58419 * 16 15 14 19 19 O 1.43183 * 108.23753 * 179.41926 * 18 16 15 20 20 C 1.36105 * 116.70611 * 313.76851 * 19 18 16 21 21 C 1.38701 * 119.40143 * 197.26370 * 20 19 18 22 22 C 1.38190 * 120.06986 * 180.10854 * 21 20 19 23 23 C 1.38259 * 120.11301 * 0.02562 * 22 21 20 24 24 C 1.38194 * 120.11240 * 359.93978 * 23 22 21 25 25 C 1.38701 * 120.06452 * 0.02562 * 24 23 22 26 26 O 1.36134 * 119.38010 * 180.27944 * 25 24 23 27 27 H 1.09000 * 109.47154 * 65.25713 * 1 2 3 28 28 H 1.08997 * 109.47117 * 185.25958 * 1 2 3 29 29 H 1.08996 * 109.47166 * 305.26191 * 1 2 3 30 30 H 1.09000 * 109.47075 * 240.00159 * 2 1 3 31 31 H 1.09004 * 109.46613 * 120.00212 * 2 1 3 32 32 H 0.96994 * 120.00105 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99494 * 37.87685 * 13 3 2 34 34 H 1.08996 * 109.47005 * 296.17708 * 14 13 3 35 35 H 1.09006 * 109.46900 * 56.17865 * 14 13 3 36 36 H 1.09008 * 109.47433 * 299.99525 * 15 14 13 37 37 H 1.08993 * 109.47589 * 60.00109 * 15 14 13 38 38 H 1.08997 * 109.70781 * 299.10072 * 18 16 15 39 39 H 1.09001 * 109.71093 * 59.73529 * 18 16 15 40 40 H 1.08004 * 119.96499 * 0.12310 * 21 20 19 41 41 H 1.08005 * 119.94656 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.94279 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.96417 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1271 1.4436 0.0801 5 6 1.4494 2.1841 1.1714 6 1 0.8383 3.0587 1.0043 7 6 1.6891 1.7460 2.4566 8 7 1.1741 2.3935 3.4789 9 14 2.7467 0.2336 2.7458 10 1 1.8864 -0.9768 2.7592 11 1 3.7500 0.1157 1.6574 12 1 3.4443 0.3595 4.0506 13 7 1.6405 2.1032 -1.2497 14 6 2.6191 1.8496 -2.3155 15 6 2.1227 2.4717 -3.6221 16 6 3.1417 2.2070 -4.7324 17 1 3.3329 1.1366 -4.8083 18 6 2.5992 2.7319 -6.0686 19 8 3.5808 2.4809 -7.0804 20 6 4.8677 2.8050 -6.7778 21 6 5.7963 2.9318 -7.8003 22 6 7.1071 3.2582 -7.5087 23 6 7.4967 3.4586 -6.1973 24 6 6.5764 3.3345 -5.1739 25 6 5.2590 3.0079 -5.4599 26 8 4.3628 2.8948 -4.4414 27 1 -0.3633 0.4301 -0.9333 28 1 -0.3633 -1.0233 0.0942 29 1 -0.3633 0.5933 0.8391 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3431 2.0855 4.3830 33 1 0.7157 1.8144 -1.5317 34 1 3.5766 2.2933 -2.0426 35 1 2.7414 0.7746 -2.4482 36 1 1.1652 2.0280 -3.8951 37 1 2.0004 3.5466 -3.4895 38 1 1.6733 2.2139 -6.3184 39 1 2.4134 3.8034 -5.9945 40 1 5.4946 2.7756 -8.8255 41 1 7.8284 3.3568 -8.3064 42 1 8.5219 3.7131 -5.9725 43 1 6.8832 3.4919 -4.1505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -68.470143 kcal Electronic energy + Delta-G solvation = -23116.736634 eV Core-core repulsion = 19740.611585 eV Total energy + Delta-G solvation = -3376.125049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.26870 -39.08821 -38.51665 -38.22680 -35.41488 -33.95743 -32.38721 -31.61406 -30.18518 -29.12781 -27.80115 -25.23813 -24.91003 -23.75998 -22.90760 -21.66568 -21.29166 -19.73806 -18.59818 -18.39714 -17.80424 -17.03174 -16.77449 -16.25729 -16.10834 -15.68575 -15.54889 -15.35913 -15.17142 -14.91906 -14.79888 -14.63189 -14.31412 -14.11690 -13.82911 -13.18732 -12.84309 -12.79088 -12.78400 -12.59551 -12.41872 -12.25672 -12.09266 -12.02378 -11.87054 -11.68553 -11.34068 -11.24855 -11.06993 -10.68272 -9.63550 -9.06650 -9.02792 -8.25292 -6.24657 0.30872 0.33825 1.27335 1.33269 1.41763 2.03450 2.24453 2.32106 2.75445 3.08171 3.09413 3.43359 3.64487 3.78870 3.97410 4.12345 4.14596 4.18534 4.27977 4.28997 4.31783 4.39250 4.45620 4.47123 4.57987 4.58803 4.68803 4.85034 4.88475 5.02375 5.10364 5.15532 5.16453 5.21397 5.25100 5.28810 5.52161 5.58652 5.72502 5.73603 5.95646 6.03448 6.43254 6.68472 6.79100 6.82286 7.38662 8.92084 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.003241 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.072419 B = 8638.478610 C = 9238.260911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C 0.190 3.810 4 H 0.017 0.983 5 C -0.487 4.487 6 H 0.038 0.962 7 C 0.014 3.986 8 N -0.950 5.950 9 Si 0.940 3.060 10 H -0.264 1.264 11 H -0.257 1.257 12 H -0.300 1.300 13 N -0.684 5.684 14 C 0.063 3.937 15 C -0.097 4.097 16 C 0.055 3.945 17 H 0.084 0.916 18 C 0.028 3.972 19 O -0.319 6.319 20 C 0.026 3.974 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.135 4.135 25 C 0.029 3.971 26 O -0.323 6.323 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.340 0.660 34 H 0.049 0.951 35 H 0.029 0.971 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 -2.497 -25.274 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.196 4.196 3 C 0.080 3.920 4 H 0.035 0.965 5 C -0.525 4.525 6 H 0.056 0.944 7 C -0.182 4.182 8 N -0.591 5.591 9 Si 0.769 3.231 10 H -0.190 1.190 11 H -0.182 1.182 12 H -0.228 1.228 13 N -0.315 5.315 14 C -0.066 4.066 15 C -0.134 4.134 16 C -0.001 4.001 17 H 0.102 0.898 18 C -0.047 4.047 19 O -0.234 6.234 20 C -0.019 4.019 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.016 4.016 26 O -0.239 6.239 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.132 0.868 37 H 0.095 0.905 38 H 0.171 0.829 39 H 0.097 0.903 40 H 0.167 0.833 41 H 0.182 0.818 42 H 0.176 0.824 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.461 -1.890 -24.902 26.368 hybrid contribution -0.014 -1.333 0.977 1.653 sum 8.447 -3.222 -23.925 25.576 Atomic orbital electron populations 1.21577 0.94600 1.00735 1.02121 1.22408 0.98312 0.99135 0.99698 1.19433 0.94521 0.89411 0.88603 0.96548 1.21118 1.29981 1.11486 0.89950 0.94378 1.25652 0.96968 0.99736 0.95869 1.70029 1.47436 1.42498 0.99170 0.85981 0.79827 0.80614 0.76721 1.19026 1.18194 1.22802 1.60470 1.05279 1.62861 1.02939 1.21867 0.96029 0.97548 0.91156 1.21509 0.97309 1.03193 0.91434 1.23253 0.83916 0.96508 0.96472 0.89836 1.23863 0.91834 1.02985 0.85986 1.86259 1.14108 1.81065 1.41940 1.19252 0.85827 1.04292 0.92544 1.20799 0.92674 1.02188 0.98415 1.21329 0.95166 0.99184 0.97556 1.21301 1.00210 0.99700 0.91921 1.20774 0.89661 1.03380 1.01563 1.19338 0.91424 1.04453 0.86387 1.86366 1.28325 1.74011 1.35184 0.91687 0.92558 0.93759 0.91869 0.94604 0.92734 0.83977 0.93234 0.95328 0.86787 0.90459 0.82851 0.90285 0.83281 0.81817 0.82405 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.40 71.98 0.68 -4.25 16 2 C -0.16 -6.30 5.23 30.60 0.16 -6.14 16 3 C 0.19 8.79 1.92 44.17 0.08 8.88 16 4 H 0.02 0.82 6.89 -2.39 -0.02 0.80 16 5 C -0.49 -27.66 7.86 25.60 0.20 -27.46 16 6 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 7 C 0.01 0.84 5.45 84.65 0.46 1.30 16 8 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 9 Si 0.94 45.48 24.33 68.60 1.67 47.15 16 10 H -0.26 -12.05 6.91 99.48 0.69 -11.37 16 11 H -0.26 -11.79 6.53 99.48 0.65 -11.14 16 12 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 13 N -0.68 -26.66 6.26 -495.47 -3.10 -29.76 16 14 C 0.06 2.03 5.38 86.30 0.46 2.49 16 15 C -0.10 -2.28 5.17 30.59 0.16 -2.12 16 16 C 0.06 1.26 3.02 30.75 0.09 1.36 16 17 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.03 0.53 6.56 72.14 0.47 1.00 16 19 O -0.32 -7.32 10.42 -82.54 -0.86 -8.18 16 20 C 0.03 0.62 6.49 22.56 0.15 0.76 16 21 C -0.12 -2.28 9.96 22.37 0.22 -2.06 16 22 C -0.11 -1.70 10.04 22.26 0.22 -1.48 16 23 C -0.11 -1.89 10.04 22.26 0.22 -1.67 16 24 C -0.14 -3.11 9.96 22.37 0.22 -2.89 16 25 C 0.03 0.77 6.49 22.56 0.15 0.91 16 26 O -0.32 -9.38 9.65 -82.87 -0.80 -10.17 16 27 H 0.06 2.05 6.61 -2.39 -0.02 2.03 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.97 6.89 -2.39 -0.02 1.96 16 30 H 0.06 2.16 7.39 -2.39 -0.02 2.15 16 31 H 0.04 1.54 3.40 -2.38 -0.01 1.53 16 32 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.34 11.85 6.55 -89.69 -0.59 11.27 16 34 H 0.05 1.82 7.84 -2.39 -0.02 1.80 16 35 H 0.03 0.86 7.38 -2.38 -0.02 0.84 16 36 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -71.31 338.53 1.51 -69.81 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.34 Total: 21.97 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 3.96 Total: -31.36 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -2.80 Total: -89.21 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.66 Total: -18.35 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.67 Total: 47.15 kcal Total: -71.31 1.51 -69.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.336 kcal (2) G-P(sol) polarization free energy of solvation -71.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds