Wall clock time and date at job start Tue Mar 31 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.09006 * 109.47327 * 54.89221 * 3 2 1 5 5 C 1.50701 * 109.47515 * 174.89699 * 3 2 1 6 6 H 1.08001 * 119.99594 * 119.99726 * 5 3 2 7 7 C 1.37875 * 119.99941 * 299.99970 * 5 3 2 8 8 N 1.31507 * 120.00008 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99822 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47519 * 90.00349 * 9 7 5 11 11 H 1.48502 * 109.46997 * 210.00411 * 9 7 5 12 12 H 1.48505 * 109.47241 * 329.99868 * 9 7 5 13 13 N 1.46906 * 109.46668 * 294.89778 * 3 2 1 14 14 C 1.46905 * 110.99769 * 154.21227 * 13 3 2 15 15 C 1.53000 * 109.46982 * 185.20377 * 14 13 3 16 16 C 1.52995 * 109.47109 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.70633 * 305.00197 * 16 15 14 18 18 C 1.53466 * 109.70974 * 184.41787 * 16 15 14 19 19 O 1.43174 * 108.24319 * 180.61572 * 18 16 15 20 20 C 1.36111 * 116.72248 * 46.17641 * 19 18 16 21 21 C 1.38699 * 119.39010 * 162.84939 * 20 19 18 22 22 C 1.38189 * 120.06805 * 179.86281 * 21 20 19 23 23 C 1.38256 * 120.11144 * 359.97083 * 22 21 20 24 24 C 1.38196 * 120.11316 * 0.05507 * 23 22 21 25 25 C 1.38702 * 120.06936 * 0.02807 * 24 23 22 26 26 O 1.36103 * 119.40019 * 179.80459 * 25 24 23 27 27 H 1.09007 * 109.46995 * 180.40092 * 1 2 3 28 28 H 1.09002 * 109.47393 * 300.39978 * 1 2 3 29 29 H 1.09002 * 109.47081 * 60.40646 * 1 2 3 30 30 H 1.08994 * 109.47300 * 239.99903 * 2 1 3 31 31 H 1.09005 * 109.47362 * 119.99316 * 2 1 3 32 32 H 0.97002 * 120.00304 * 179.97438 * 8 7 5 33 33 H 1.00900 * 110.99965 * 278.15825 * 13 3 2 34 34 H 1.09002 * 109.46913 * 305.20247 * 14 13 3 35 35 H 1.08998 * 109.47151 * 65.20213 * 14 13 3 36 36 H 1.09002 * 109.47190 * 299.99700 * 15 14 13 37 37 H 1.09002 * 109.47037 * 59.99524 * 15 14 13 38 38 H 1.09002 * 109.71401 * 300.24712 * 18 16 15 39 39 H 1.09000 * 109.71263 * 60.87443 * 18 16 15 40 40 H 1.08007 * 119.96339 * 359.84166 * 21 20 19 41 41 H 1.08004 * 119.94620 * 179.97438 * 22 21 20 42 42 H 1.07994 * 119.94301 * 180.02562 * 23 22 21 43 43 H 1.08005 * 119.96675 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 0.8407 5 6 3.5417 1.4445 0.1264 6 1 4.1482 1.8886 -0.6491 7 6 4.1412 0.8793 1.2319 8 7 5.4516 0.8806 1.3419 9 14 3.0919 0.1118 2.5733 10 1 2.8706 -1.3245 2.2678 11 1 3.7875 0.2386 3.8792 12 1 1.7835 0.8111 2.6394 13 7 1.6534 2.0985 -1.2564 14 6 1.5561 3.5539 -1.0821 15 6 1.0277 4.1876 -2.3705 16 6 0.9258 5.7033 -2.1888 17 1 0.3153 5.9284 -1.3143 18 6 0.2933 6.3329 -3.4374 19 8 0.2264 7.7494 -3.2401 20 6 1.3456 8.3534 -2.7552 21 6 1.4830 9.7284 -2.8746 22 6 2.6123 10.3565 -2.3847 23 6 3.6077 9.6165 -1.7739 24 6 3.4773 8.2461 -1.6522 25 6 2.3472 7.6092 -2.1433 26 8 2.2347 6.2585 -2.0197 27 1 -0.3633 -1.0277 0.0072 28 1 -0.3634 0.5200 0.8864 29 1 -0.3633 0.5075 -0.8936 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 5.8735 0.4833 2.1198 33 1 2.2960 1.8654 -1.9986 34 1 0.8742 3.7767 -0.2614 35 1 2.5421 3.9594 -0.8554 36 1 1.7096 3.9648 -3.1912 37 1 0.0417 3.7820 -2.5971 38 1 0.9069 6.1129 -4.3110 39 1 -0.7104 5.9333 -3.5823 40 1 0.7068 10.3088 -3.3512 41 1 2.7175 11.4272 -2.4791 42 1 4.4888 10.1101 -1.3917 43 1 4.2561 7.6703 -1.1743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:23 Heat of formation + Delta-G solvation = -53.122764 kcal Electronic energy + Delta-G solvation = -23156.056529 eV Core-core repulsion = 19780.596992 eV Total energy + Delta-G solvation = -3375.459537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31560 -37.96989 -37.35241 -36.57296 -33.93332 -32.05087 -31.32699 -30.72509 -29.18262 -27.81696 -26.26869 -24.03825 -22.85530 -22.47501 -21.37625 -20.70115 -19.80142 -18.75526 -17.56129 -16.99868 -16.84733 -15.45545 -15.28866 -15.15730 -14.87055 -14.49555 -14.43049 -14.07023 -13.87984 -13.64015 -13.45426 -12.95894 -12.76927 -12.45768 -12.04462 -11.93238 -11.84049 -11.63395 -11.45672 -11.28378 -11.19146 -10.88268 -10.77146 -10.52110 -10.41984 -10.11353 -9.77063 -9.44949 -9.21485 -8.73147 -8.58259 -8.12469 -7.39258 -6.12924 -4.13917 1.20519 1.23579 2.96268 3.15871 3.25146 3.35720 3.38049 3.64553 4.08889 4.36473 4.51092 4.69633 4.72069 4.89198 5.04538 5.14775 5.19175 5.23978 5.28896 5.36111 5.48313 5.56545 5.76259 5.82263 5.98180 6.01726 6.04499 6.06219 6.13463 6.25045 6.35901 6.37819 6.54679 6.65048 6.68264 6.72700 6.89204 6.95225 7.08515 7.25847 7.40066 7.55450 8.00342 8.35744 8.47578 8.89673 9.50363 11.00111 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.003606 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.212493 B = 7763.514104 C = 8785.784354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.031 0.969 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.265 1.265 13 N -0.682 5.682 14 C 0.067 3.933 15 C -0.106 4.106 16 C 0.055 3.945 17 H 0.085 0.915 18 C 0.027 3.973 19 O -0.310 6.310 20 C 0.045 3.955 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.115 4.115 25 C 0.059 3.941 26 O -0.295 6.295 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.334 0.666 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 14.731 -8.677 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.075 3.925 4 H 0.049 0.951 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.311 5.311 14 C -0.064 4.064 15 C -0.144 4.144 16 C -0.002 4.002 17 H 0.103 0.897 18 C -0.049 4.049 19 O -0.225 6.225 20 C 0.000 4.000 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.134 4.134 25 C 0.014 3.986 26 O -0.210 6.210 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.289 14.503 -8.473 19.697 hybrid contribution 0.556 -0.429 0.881 1.126 sum -9.734 14.074 -7.592 18.720 Atomic orbital electron populations 1.21731 0.97603 0.99281 1.01397 1.21820 0.93803 0.99377 1.00402 1.19559 0.94335 0.90564 0.88043 0.95130 1.21742 0.90523 1.39040 1.07178 0.90952 1.25006 0.94769 0.95302 0.97926 1.69916 1.08918 1.45030 1.29664 0.86816 0.80602 0.79841 0.80732 1.20440 1.22591 1.18999 1.60771 1.54866 1.06290 1.09215 1.21712 1.00038 0.89715 0.94890 1.21604 1.03250 0.88923 1.00636 1.23247 0.83226 0.95824 0.97944 0.89737 1.23718 1.04255 0.78933 0.97962 1.86272 1.33314 1.22221 1.80697 1.18958 0.88463 0.93065 0.99545 1.20403 0.99235 0.91094 1.02849 1.20875 0.93508 0.99949 0.99832 1.20925 0.99505 0.92845 1.00187 1.20572 0.97286 0.94425 1.01101 1.19039 0.96387 0.83728 0.99482 1.86444 1.30541 1.16890 1.87113 0.94851 0.94277 0.91937 0.92394 0.93747 0.92639 0.84945 0.92191 0.93923 0.90813 0.89133 0.90487 0.85989 0.85108 0.85312 0.85175 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.16 0.36 -2.22 16 2 C -0.12 -2.51 5.11 -26.73 -0.14 -2.65 16 3 C 0.18 4.26 1.57 -68.86 -0.11 4.15 16 4 H 0.03 0.75 6.76 -51.93 -0.35 0.40 16 5 C -0.55 -15.09 9.05 -34.44 -0.31 -15.40 16 6 H 0.07 2.18 7.97 -52.49 -0.42 1.76 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 9 Si 0.89 22.07 24.41 -169.99 -4.15 17.92 16 10 H -0.28 -6.70 6.83 56.52 0.39 -6.32 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.68 -13.26 5.68 -107.94 -0.61 -13.87 16 14 C 0.07 1.17 5.41 -3.82 -0.02 1.15 16 15 C -0.11 -1.40 5.25 -26.73 -0.14 -1.54 16 16 C 0.05 0.70 3.02 -26.49 -0.08 0.62 16 17 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 18 C 0.03 0.29 6.56 37.40 0.25 0.54 16 19 O -0.31 -4.00 10.42 -32.87 -0.34 -4.34 16 20 C 0.04 0.60 6.49 -39.14 -0.25 0.34 16 21 C -0.12 -1.31 9.96 -39.43 -0.39 -1.70 16 22 C -0.12 -1.21 10.04 -39.59 -0.40 -1.61 16 23 C -0.12 -1.22 10.04 -39.59 -0.40 -1.62 16 24 C -0.12 -1.50 9.96 -39.43 -0.39 -1.89 16 25 C 0.06 0.86 6.49 -39.14 -0.25 0.60 16 26 O -0.30 -4.62 9.65 -32.84 -0.32 -4.93 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.07 7.77 -51.93 -0.40 0.66 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 1.03 3.22 -51.93 -0.17 0.86 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.33 6.55 8.46 -39.29 -0.33 6.22 16 34 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 35 H 0.04 0.88 7.82 -51.93 -0.41 0.47 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 41 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -31.29 344.38 -8.58 -39.87 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.75 Total: 6.06 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -2.37 Total: -19.23 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.16 Total: -40.53 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.66 Total: -9.27 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.15 Total: 17.92 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.29 -8.58 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.257 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds