Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.09006 * 109.47327 * 54.89221 * 3 2 1 5 5 C 1.50701 * 109.47515 * 174.89699 * 3 2 1 6 6 H 1.08001 * 119.99594 * 119.99726 * 5 3 2 7 7 C 1.37875 * 119.99941 * 299.99970 * 5 3 2 8 8 N 1.31507 * 120.00008 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99822 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47519 * 90.00349 * 9 7 5 11 11 H 1.48502 * 109.46997 * 210.00411 * 9 7 5 12 12 H 1.48505 * 109.47241 * 329.99868 * 9 7 5 13 13 N 1.46906 * 109.46668 * 294.89778 * 3 2 1 14 14 C 1.46905 * 110.99769 * 154.21227 * 13 3 2 15 15 C 1.53000 * 109.46982 * 185.20377 * 14 13 3 16 16 C 1.52995 * 109.47109 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.70633 * 305.00197 * 16 15 14 18 18 C 1.53466 * 109.70974 * 184.41787 * 16 15 14 19 19 O 1.43174 * 108.24319 * 180.61572 * 18 16 15 20 20 C 1.36111 * 116.72248 * 46.17641 * 19 18 16 21 21 C 1.38699 * 119.39010 * 162.84939 * 20 19 18 22 22 C 1.38189 * 120.06805 * 179.86281 * 21 20 19 23 23 C 1.38256 * 120.11144 * 359.97083 * 22 21 20 24 24 C 1.38196 * 120.11316 * 0.05507 * 23 22 21 25 25 C 1.38702 * 120.06936 * 0.02807 * 24 23 22 26 26 O 1.36103 * 119.40019 * 179.80459 * 25 24 23 27 27 H 1.09007 * 109.46995 * 180.40092 * 1 2 3 28 28 H 1.09002 * 109.47393 * 300.39978 * 1 2 3 29 29 H 1.09002 * 109.47081 * 60.40646 * 1 2 3 30 30 H 1.08994 * 109.47300 * 239.99903 * 2 1 3 31 31 H 1.09005 * 109.47362 * 119.99316 * 2 1 3 32 32 H 0.97002 * 120.00304 * 179.97438 * 8 7 5 33 33 H 1.00900 * 110.99965 * 278.15825 * 13 3 2 34 34 H 1.09002 * 109.46913 * 305.20247 * 14 13 3 35 35 H 1.08998 * 109.47151 * 65.20213 * 14 13 3 36 36 H 1.09002 * 109.47190 * 299.99700 * 15 14 13 37 37 H 1.09002 * 109.47037 * 59.99524 * 15 14 13 38 38 H 1.09002 * 109.71401 * 300.24712 * 18 16 15 39 39 H 1.09000 * 109.71263 * 60.87443 * 18 16 15 40 40 H 1.08007 * 119.96339 * 359.84166 * 21 20 19 41 41 H 1.08004 * 119.94620 * 179.97438 * 22 21 20 42 42 H 1.07994 * 119.94301 * 180.02562 * 23 22 21 43 43 H 1.08005 * 119.96675 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 0.8407 5 6 3.5417 1.4445 0.1264 6 1 4.1482 1.8886 -0.6491 7 6 4.1412 0.8793 1.2319 8 7 5.4516 0.8806 1.3419 9 14 3.0919 0.1118 2.5733 10 1 2.8706 -1.3245 2.2678 11 1 3.7875 0.2386 3.8792 12 1 1.7835 0.8111 2.6394 13 7 1.6534 2.0985 -1.2564 14 6 1.5561 3.5539 -1.0821 15 6 1.0277 4.1876 -2.3705 16 6 0.9258 5.7033 -2.1888 17 1 0.3153 5.9284 -1.3143 18 6 0.2933 6.3329 -3.4374 19 8 0.2264 7.7494 -3.2401 20 6 1.3456 8.3534 -2.7552 21 6 1.4830 9.7284 -2.8746 22 6 2.6123 10.3565 -2.3847 23 6 3.6077 9.6165 -1.7739 24 6 3.4773 8.2461 -1.6522 25 6 2.3472 7.6092 -2.1433 26 8 2.2347 6.2585 -2.0197 27 1 -0.3633 -1.0277 0.0072 28 1 -0.3634 0.5200 0.8864 29 1 -0.3633 0.5075 -0.8936 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 5.8735 0.4833 2.1198 33 1 2.2960 1.8654 -1.9986 34 1 0.8742 3.7767 -0.2614 35 1 2.5421 3.9594 -0.8554 36 1 1.7096 3.9648 -3.1912 37 1 0.0417 3.7820 -2.5971 38 1 0.9069 6.1129 -4.3110 39 1 -0.7104 5.9333 -3.5823 40 1 0.7068 10.3088 -3.3512 41 1 2.7175 11.4272 -2.4791 42 1 4.4888 10.1101 -1.3917 43 1 4.2561 7.6703 -1.1743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -73.964082 kcal Electronic energy + Delta-G solvation = -23156.960276 eV Core-core repulsion = 19780.596992 eV Total energy + Delta-G solvation = -3376.363284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.27059 -38.98014 -38.39046 -38.12710 -35.35700 -34.08088 -32.65224 -31.62859 -30.27901 -29.21791 -27.79423 -25.22429 -24.22109 -23.71847 -22.69581 -21.84997 -21.39873 -19.77040 -19.09395 -18.48170 -17.80470 -17.13209 -16.43592 -16.25162 -16.00505 -15.80175 -15.56584 -15.36433 -15.13144 -14.92066 -14.81501 -14.57699 -14.06557 -13.94557 -13.47772 -13.33364 -13.10473 -12.91736 -12.77932 -12.55934 -12.51082 -12.15655 -12.07786 -12.04891 -11.82491 -11.62285 -11.31423 -11.29483 -11.15541 -10.70289 -9.64816 -9.14620 -9.07174 -8.36350 -6.41779 0.29448 0.32802 1.27258 1.32253 1.43057 2.04077 2.25258 2.27002 2.74290 2.98590 3.09840 3.44488 3.66072 3.78326 3.97882 4.13645 4.16818 4.22043 4.34643 4.39840 4.43986 4.45664 4.46860 4.55408 4.60192 4.69833 4.77490 4.87279 4.93452 5.07225 5.15694 5.17270 5.21804 5.23442 5.32292 5.44717 5.48945 5.50775 5.64167 5.72734 5.95731 6.04368 6.35967 6.43382 6.58648 6.75429 7.27089 8.80336 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.003606 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.212493 B = 7763.514104 C = 8785.784354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.189 3.811 4 H 0.022 0.978 5 C -0.548 4.548 6 H 0.029 0.971 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.953 3.047 10 H -0.262 1.262 11 H -0.300 1.300 12 H -0.248 1.248 13 N -0.665 5.665 14 C 0.069 3.931 15 C -0.090 4.090 16 C 0.051 3.949 17 H 0.082 0.918 18 C 0.031 3.969 19 O -0.317 6.317 20 C 0.028 3.972 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.139 4.139 25 C 0.028 3.972 26 O -0.328 6.328 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.266 0.734 33 H 0.333 0.667 34 H 0.061 0.939 35 H 0.000 1.000 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.592 15.604 -9.204 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.079 3.921 4 H 0.040 0.960 5 C -0.587 4.587 6 H 0.047 0.953 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.779 3.221 10 H -0.188 1.188 11 H -0.228 1.228 12 H -0.172 1.172 13 N -0.293 5.293 14 C -0.061 4.061 15 C -0.128 4.128 16 C -0.005 4.005 17 H 0.100 0.900 18 C -0.044 4.044 19 O -0.232 6.232 20 C -0.017 4.017 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.158 4.158 25 C -0.017 4.017 26 O -0.244 6.244 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.019 0.981 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.174 0.826 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.175 0.825 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.184 15.386 -9.024 22.181 hybrid contribution 1.549 -0.578 0.981 1.923 sum -11.635 14.808 -8.043 20.478 Atomic orbital electron populations 1.21647 0.94272 1.01138 1.02070 1.21747 0.96728 0.97287 0.99725 1.19440 0.90997 0.92323 0.89344 0.96027 1.22087 0.93029 1.37727 1.05875 0.95256 1.25898 0.95872 0.96060 1.00594 1.70070 1.11015 1.46873 1.30797 0.85790 0.79355 0.79729 0.77182 1.18826 1.22820 1.17150 1.60815 1.53807 1.07186 1.07478 1.21731 0.98118 0.88583 0.97674 1.21478 1.04492 0.89090 0.97737 1.23322 0.82590 0.95435 0.99181 0.90048 1.23862 1.05987 0.78037 0.96541 1.86249 1.33217 1.23055 1.80697 1.19233 0.88426 0.93992 1.00079 1.20814 1.00235 0.90359 1.02436 1.21333 0.92257 1.01673 0.97834 1.21284 1.00680 0.91719 0.99435 1.20764 0.97094 0.95854 1.02097 1.19340 0.97633 0.83444 1.01234 1.86391 1.32132 1.18039 1.87794 0.92430 0.94068 0.90822 0.92535 0.95048 0.92550 0.85120 0.92028 0.98118 0.90944 0.86004 0.90233 0.82555 0.82932 0.81576 0.82536 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 9.80 71.98 0.71 -3.68 16 2 C -0.12 -4.86 5.11 30.59 0.16 -4.70 16 3 C 0.19 8.74 1.57 44.17 0.07 8.81 16 4 H 0.02 1.05 6.76 -2.38 -0.02 1.04 16 5 C -0.55 -31.47 9.05 25.60 0.23 -31.24 16 6 H 0.03 1.88 7.97 -2.91 -0.02 1.86 16 7 C 0.01 0.81 5.45 84.66 0.46 1.27 16 8 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 9 Si 0.95 45.71 24.41 68.60 1.67 47.39 16 10 H -0.26 -11.90 6.83 99.48 0.68 -11.22 16 11 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 12 H -0.25 -11.08 6.53 99.48 0.65 -10.43 16 13 N -0.66 -25.76 5.68 -495.41 -2.82 -28.58 16 14 C 0.07 2.47 5.41 86.30 0.47 2.93 16 15 C -0.09 -2.32 5.25 30.59 0.16 -2.16 16 16 C 0.05 1.32 3.02 30.75 0.09 1.41 16 17 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 18 C 0.03 0.62 6.56 72.14 0.47 1.09 16 19 O -0.32 -7.79 10.42 -82.59 -0.86 -8.65 16 20 C 0.03 0.72 6.49 22.56 0.15 0.87 16 21 C -0.12 -2.45 9.96 22.37 0.22 -2.22 16 22 C -0.11 -1.92 10.04 22.26 0.22 -1.70 16 23 C -0.11 -2.25 10.04 22.26 0.22 -2.02 16 24 C -0.14 -3.78 9.96 22.37 0.22 -3.56 16 25 C 0.03 0.85 6.49 22.56 0.15 1.00 16 26 O -0.33 -10.84 9.65 -82.50 -0.80 -11.64 16 27 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.24 7.77 -2.39 -0.02 2.22 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.03 1.39 3.22 -2.38 -0.01 1.38 16 32 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.33 13.26 8.46 -89.69 -0.76 12.50 16 34 H 0.06 2.17 7.92 -2.39 -0.02 2.15 16 35 H 0.00 0.02 7.82 -2.39 -0.02 0.00 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -71.55 344.38 1.66 -69.89 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.15 Total: 25.38 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 4.00 Total: -33.89 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.52 Total: -88.48 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.66 Total: -20.29 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.67 Total: 47.39 kcal Total: -71.55 1.66 -69.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.076 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds