Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47168 * 2 1 4 4 H 1.08999 * 109.47182 * 180.91481 * 3 2 1 5 5 C 1.50695 * 109.47075 * 300.92224 * 3 2 1 6 6 H 1.07997 * 120.00196 * 120.00379 * 5 3 2 7 7 C 1.37876 * 119.99988 * 299.99595 * 5 3 2 8 8 N 1.31522 * 119.99777 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00341 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47074 * 89.99857 * 9 7 5 11 11 H 1.48499 * 109.47409 * 210.00145 * 9 7 5 12 12 H 1.48498 * 109.47217 * 330.00263 * 9 7 5 13 13 N 1.46898 * 109.46998 * 60.92095 * 3 2 1 14 14 C 1.46901 * 111.00590 * 86.27829 * 13 3 2 15 15 C 1.52998 * 109.47777 * 175.13252 * 14 13 3 16 16 H 1.09004 * 109.46756 * 305.00656 * 15 14 13 17 17 C 1.50710 * 109.46671 * 65.00160 * 15 14 13 18 18 O 1.20824 * 119.99983 * 359.97438 * 17 15 14 19 19 O 1.34225 * 119.99566 * 180.02562 * 17 15 14 20 20 C 1.45202 * 116.99785 * 179.97438 * 19 17 15 21 21 C 1.50692 * 109.47439 * 184.99892 * 15 14 13 22 22 C 1.38236 * 120.00419 * 299.73299 * 21 15 14 23 23 C 1.38232 * 120.00203 * 179.78376 * 22 21 15 24 24 C 1.38241 * 119.99830 * 0.44279 * 23 22 21 25 25 C 1.38233 * 119.99814 * 359.80907 * 24 23 22 26 26 C 1.38234 * 119.99695 * 119.99708 * 21 15 14 27 27 H 1.09001 * 109.46624 * 295.65186 * 1 2 3 28 28 H 1.08997 * 109.46669 * 175.66050 * 1 2 3 29 29 H 1.08996 * 109.46920 * 55.65437 * 1 2 3 30 30 H 1.09004 * 109.47034 * 120.00198 * 2 1 3 31 31 H 1.09002 * 109.46994 * 240.00104 * 2 1 3 32 32 H 0.97000 * 119.99853 * 179.97438 * 8 7 5 33 33 H 1.00902 * 111.00055 * 210.23518 * 13 3 2 34 34 H 1.08998 * 109.46976 * 295.14023 * 14 13 3 35 35 H 1.09004 * 109.46501 * 55.13394 * 14 13 3 36 36 H 1.09001 * 109.46794 * 60.00150 * 20 19 17 37 37 H 1.08996 * 109.46842 * 179.97438 * 20 19 17 38 38 H 1.08994 * 109.47298 * 300.00448 * 20 19 17 39 39 H 1.08001 * 119.99664 * 359.97438 * 22 21 15 40 40 H 1.07999 * 120.00221 * 180.26706 * 23 22 21 41 41 H 1.07998 * 119.99904 * 179.83010 * 24 23 22 42 42 H 1.08007 * 119.99713 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.00349 * 359.97438 * 26 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0164 5 6 1.5191 2.1595 -1.2188 6 1 0.8999 3.0370 -1.1057 7 6 1.8332 1.6952 -2.4785 8 7 2.5871 0.6263 -2.6163 9 14 1.1882 2.5842 -3.9894 10 1 2.1606 3.6278 -4.4025 11 1 1.0063 1.6112 -5.0963 12 1 -0.1151 3.2206 -3.6705 13 7 1.5686 2.1285 1.2104 14 6 2.4857 1.9014 2.3353 15 6 2.0292 2.7265 3.5402 16 1 1.9456 3.7745 3.2522 17 6 0.6879 2.2267 4.0121 18 8 0.1521 1.3055 3.4428 19 8 0.0883 2.8056 5.0642 20 6 -1.2022 2.2727 5.4628 21 6 3.0360 2.5900 4.6531 22 6 3.3082 1.3456 5.1902 23 6 4.2351 1.2199 6.2080 24 6 4.8830 2.3397 6.6950 25 6 4.6069 3.5847 6.1615 26 6 3.6833 3.7099 5.1406 27 1 -0.3632 0.4449 0.9264 28 1 -0.3632 -1.0247 -0.0778 29 1 -0.3633 0.5798 -0.8485 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.8077 0.2994 -3.5025 33 1 1.4418 3.1151 1.0407 34 1 2.4839 0.8435 2.5976 35 1 3.4933 2.2031 2.0492 36 1 -1.0945 1.2212 5.7291 37 1 -1.5748 2.8287 6.3231 38 1 -1.9058 2.3678 4.6358 39 1 2.7990 0.4713 4.8124 40 1 4.4509 0.2471 6.6246 41 1 5.6051 2.2418 7.4921 42 1 5.1135 4.4595 6.5418 43 1 3.4678 4.6825 4.7237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -64.366443 kcal Electronic energy + Delta-G solvation = -23731.950933 eV Core-core repulsion = 20356.003834 eV Total energy + Delta-G solvation = -3375.947099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47999 -39.04130 -36.75167 -35.78569 -33.99542 -31.94315 -30.95690 -30.40038 -28.47281 -27.41793 -25.78229 -23.30825 -22.96183 -22.56129 -22.04693 -19.88363 -18.94255 -17.51309 -16.96189 -16.60943 -16.15401 -15.92335 -15.19549 -14.84943 -14.65044 -14.09807 -13.79356 -13.47641 -13.40529 -13.21834 -12.84800 -12.73440 -12.50375 -12.17270 -12.00082 -11.77933 -11.63309 -11.29266 -11.13849 -10.90214 -10.82434 -10.64004 -10.53548 -10.29425 -10.11801 -9.90918 -9.62501 -9.22289 -8.96228 -8.77349 -8.67946 -8.41592 -7.13958 -5.97197 -4.02274 1.25772 1.35934 2.60987 2.94741 3.31408 3.38632 3.42239 3.74059 4.42738 4.60586 4.77157 4.93267 5.01974 5.07270 5.17193 5.20847 5.28782 5.33814 5.39191 5.49021 5.54676 5.61508 5.68049 5.92499 5.98653 6.16642 6.33872 6.39984 6.45418 6.56268 6.66329 6.68969 6.85686 6.93391 7.02068 7.38736 7.45044 7.60378 7.84677 7.86404 7.93494 8.16621 8.33611 8.44810 8.71569 9.06691 9.61936 11.08688 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.004277 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.149794 B = 6545.335098 C = 7200.292035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.098 4.098 3 C 0.219 3.781 4 H -0.001 1.001 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.081 3.919 15 C -0.037 4.037 16 H 0.110 0.890 17 C 0.464 3.536 18 O -0.462 6.462 19 O -0.366 6.366 20 C 0.037 3.963 21 C -0.070 4.070 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.104 4.104 27 H 0.050 0.950 28 H 0.009 0.991 29 H 0.052 0.948 30 H 0.008 0.992 31 H 0.082 0.918 32 H 0.260 0.740 33 H 0.325 0.675 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 4.608 18.858 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.136 4.136 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.049 4.049 15 C -0.057 4.057 16 H 0.128 0.872 17 C 0.304 3.696 18 O -0.344 6.344 19 O -0.284 6.284 20 C -0.057 4.057 21 C -0.071 4.071 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.138 4.138 26 C -0.122 4.122 27 H 0.069 0.931 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.572 3.657 18.703 19.065 hybrid contribution 0.270 0.862 -1.131 1.447 sum 0.842 4.519 17.572 18.163 Atomic orbital electron populations 1.21443 0.97437 0.97124 1.01652 1.21364 0.95219 0.98015 0.99021 1.19118 0.92902 0.91698 0.85103 0.98308 1.21176 1.31519 1.11877 0.90362 0.92388 1.24876 0.95119 0.94997 0.98832 1.69899 1.37131 1.22846 1.22840 0.86591 0.79282 0.79363 0.82719 1.20872 1.21278 1.19905 1.60722 1.47790 1.15466 1.06638 1.21839 0.94275 0.99231 0.89544 1.20205 0.87606 1.03150 0.94714 0.87232 1.23335 0.87295 0.81441 0.77534 1.90747 1.64013 1.26626 1.53044 1.86509 1.34627 1.59783 1.47504 1.23151 0.82466 0.99579 1.00471 1.19462 0.97297 0.93917 0.96425 1.21095 0.98042 0.97063 0.96420 1.21110 0.96749 0.98724 0.97011 1.21145 0.99930 0.92845 1.00119 1.21105 0.98240 0.97539 0.96962 1.21061 0.96458 0.97997 0.96722 0.93060 0.97224 0.92906 0.97284 0.89926 0.93030 0.85806 0.90765 0.94726 0.92322 0.88779 0.91938 0.85964 0.86034 0.86222 0.86017 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 9.53 37.16 0.35 -2.54 16 2 C -0.10 -2.48 5.59 -26.73 -0.15 -2.63 16 3 C 0.22 5.53 2.31 -68.87 -0.16 5.37 16 4 H 0.00 -0.02 7.70 -51.93 -0.40 -0.42 16 5 C -0.51 -13.82 7.21 -34.44 -0.25 -14.07 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.43 11.33 55.43 0.63 -24.80 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -14.37 4.84 -107.95 -0.52 -14.89 16 14 C 0.08 1.47 4.23 -3.82 -0.02 1.45 16 15 C -0.04 -0.55 2.58 -92.92 -0.24 -0.79 16 16 H 0.11 1.45 7.86 -51.93 -0.41 1.05 16 17 C 0.46 7.53 6.74 36.01 0.24 7.77 16 18 O -0.46 -8.98 15.06 -18.75 -0.28 -9.26 16 19 O -0.37 -5.22 10.48 -39.24 -0.41 -5.64 16 20 C 0.04 0.42 10.56 101.05 1.07 1.49 16 21 C -0.07 -0.93 4.71 -104.63 -0.49 -1.42 16 22 C -0.11 -1.41 8.86 -39.58 -0.35 -1.76 16 23 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 26 C -0.10 -1.19 9.67 -39.58 -0.38 -1.57 16 27 H 0.05 1.24 7.72 -51.93 -0.40 0.84 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.05 1.35 7.04 -51.93 -0.37 0.99 16 30 H 0.01 0.21 7.61 -51.93 -0.40 -0.19 16 31 H 0.08 2.31 6.09 -51.93 -0.32 1.99 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.33 6.67 8.11 -39.29 -0.32 6.35 16 34 H 0.07 1.44 6.88 -51.93 -0.36 1.08 16 35 H 0.03 0.63 7.93 -51.93 -0.41 0.22 16 36 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 39 H 0.12 1.65 7.65 -52.49 -0.40 1.25 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.12 1.20 7.95 -52.49 -0.42 0.79 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -30.96 355.16 -8.60 -39.57 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.68 Total: 5.33 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.66 Total: -11.99 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.11 Total: -39.69 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.69 Total: -14.90 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.96 -8.60 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.801 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds