Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47168 * 2 1 4 4 H 1.08999 * 109.47182 * 180.91481 * 3 2 1 5 5 C 1.50695 * 109.47075 * 300.92224 * 3 2 1 6 6 H 1.07997 * 120.00196 * 120.00379 * 5 3 2 7 7 C 1.37876 * 119.99988 * 299.99595 * 5 3 2 8 8 N 1.31522 * 119.99777 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00341 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47074 * 89.99857 * 9 7 5 11 11 H 1.48499 * 109.47409 * 210.00145 * 9 7 5 12 12 H 1.48498 * 109.47217 * 330.00263 * 9 7 5 13 13 N 1.46898 * 109.46998 * 60.92095 * 3 2 1 14 14 C 1.46901 * 111.00590 * 86.27829 * 13 3 2 15 15 C 1.52998 * 109.47777 * 175.13252 * 14 13 3 16 16 H 1.09004 * 109.46756 * 305.00656 * 15 14 13 17 17 C 1.50710 * 109.46671 * 65.00160 * 15 14 13 18 18 O 1.20824 * 119.99983 * 359.97438 * 17 15 14 19 19 O 1.34225 * 119.99566 * 180.02562 * 17 15 14 20 20 C 1.45202 * 116.99785 * 179.97438 * 19 17 15 21 21 C 1.50692 * 109.47439 * 184.99892 * 15 14 13 22 22 C 1.38236 * 120.00419 * 299.73299 * 21 15 14 23 23 C 1.38232 * 120.00203 * 179.78376 * 22 21 15 24 24 C 1.38241 * 119.99830 * 0.44279 * 23 22 21 25 25 C 1.38233 * 119.99814 * 359.80907 * 24 23 22 26 26 C 1.38234 * 119.99695 * 119.99708 * 21 15 14 27 27 H 1.09001 * 109.46624 * 295.65186 * 1 2 3 28 28 H 1.08997 * 109.46669 * 175.66050 * 1 2 3 29 29 H 1.08996 * 109.46920 * 55.65437 * 1 2 3 30 30 H 1.09004 * 109.47034 * 120.00198 * 2 1 3 31 31 H 1.09002 * 109.46994 * 240.00104 * 2 1 3 32 32 H 0.97000 * 119.99853 * 179.97438 * 8 7 5 33 33 H 1.00902 * 111.00055 * 210.23518 * 13 3 2 34 34 H 1.08998 * 109.46976 * 295.14023 * 14 13 3 35 35 H 1.09004 * 109.46501 * 55.13394 * 14 13 3 36 36 H 1.09001 * 109.46794 * 60.00150 * 20 19 17 37 37 H 1.08996 * 109.46842 * 179.97438 * 20 19 17 38 38 H 1.08994 * 109.47298 * 300.00448 * 20 19 17 39 39 H 1.08001 * 119.99664 * 359.97438 * 22 21 15 40 40 H 1.07999 * 120.00221 * 180.26706 * 23 22 21 41 41 H 1.07998 * 119.99904 * 179.83010 * 24 23 22 42 42 H 1.08007 * 119.99713 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.00349 * 359.97438 * 26 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0164 5 6 1.5191 2.1595 -1.2188 6 1 0.8999 3.0370 -1.1057 7 6 1.8332 1.6952 -2.4785 8 7 2.5871 0.6263 -2.6163 9 14 1.1882 2.5842 -3.9894 10 1 2.1606 3.6278 -4.4025 11 1 1.0063 1.6112 -5.0963 12 1 -0.1151 3.2206 -3.6705 13 7 1.5686 2.1285 1.2104 14 6 2.4857 1.9014 2.3353 15 6 2.0292 2.7265 3.5402 16 1 1.9456 3.7745 3.2522 17 6 0.6879 2.2267 4.0121 18 8 0.1521 1.3055 3.4428 19 8 0.0883 2.8056 5.0642 20 6 -1.2022 2.2727 5.4628 21 6 3.0360 2.5900 4.6531 22 6 3.3082 1.3456 5.1902 23 6 4.2351 1.2199 6.2080 24 6 4.8830 2.3397 6.6950 25 6 4.6069 3.5847 6.1615 26 6 3.6833 3.7099 5.1406 27 1 -0.3632 0.4449 0.9264 28 1 -0.3632 -1.0247 -0.0778 29 1 -0.3633 0.5798 -0.8485 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.8077 0.2994 -3.5025 33 1 1.4418 3.1151 1.0407 34 1 2.4839 0.8435 2.5976 35 1 3.4933 2.2031 2.0492 36 1 -1.0945 1.2212 5.7291 37 1 -1.5748 2.8287 6.3231 38 1 -1.9058 2.3678 4.6358 39 1 2.7990 0.4713 4.8124 40 1 4.4509 0.2471 6.6246 41 1 5.6051 2.2418 7.4921 42 1 5.1135 4.4595 6.5418 43 1 3.4678 4.6825 4.7237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -81.423706 kcal Electronic energy + Delta-G solvation = -23732.690591 eV Core-core repulsion = 20356.003834 eV Total energy + Delta-G solvation = -3376.686757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68104 -39.99357 -38.32066 -37.25968 -35.46967 -33.72358 -32.17946 -31.79473 -29.66211 -28.74542 -27.48893 -25.17361 -24.50294 -23.54710 -23.02349 -21.14368 -20.87352 -18.69027 -18.44582 -17.93279 -17.57198 -17.03575 -16.78720 -16.11103 -15.85734 -15.60911 -15.23752 -15.09269 -14.61574 -14.32949 -14.20066 -14.03962 -13.82465 -13.73884 -13.51326 -13.22441 -12.94670 -12.81072 -12.66518 -12.52897 -12.37500 -12.12497 -11.88914 -11.82550 -11.68190 -11.57534 -11.33049 -11.26367 -10.79177 -10.51951 -9.81386 -9.67113 -8.94313 -8.08117 -6.20266 0.36870 0.50799 1.35117 1.42056 1.44134 1.53873 1.83273 2.43506 2.85490 3.20408 3.43435 3.72819 3.80301 4.07988 4.14588 4.15464 4.28946 4.33284 4.35200 4.37587 4.60034 4.62366 4.65548 4.69341 4.76490 4.80518 4.91800 4.96274 5.05178 5.16356 5.31243 5.42823 5.48161 5.55853 5.56752 5.62733 5.64467 5.73293 5.80933 5.89649 6.10662 6.28020 6.49656 6.80575 6.92229 7.05130 7.48146 8.97317 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.004277 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.149794 B = 6545.335098 C = 7200.292035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.093 4.093 3 C 0.226 3.774 4 H -0.033 1.033 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.674 5.674 14 C 0.089 3.911 15 C -0.028 4.028 16 H 0.128 0.872 17 C 0.468 3.532 18 O -0.503 6.503 19 O -0.365 6.365 20 C 0.031 3.969 21 C -0.088 4.088 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.110 4.110 27 H 0.049 0.951 28 H 0.025 0.975 29 H 0.036 0.964 30 H 0.010 0.990 31 H 0.057 0.943 32 H 0.260 0.740 33 H 0.330 0.670 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.132 0.868 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 6.394 20.481 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C 0.118 3.882 4 H -0.016 1.016 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.304 5.304 14 C -0.041 4.041 15 C -0.047 4.047 16 H 0.146 0.854 17 C 0.310 3.690 18 O -0.389 6.389 19 O -0.282 6.282 20 C -0.062 4.062 21 C -0.089 4.089 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.127 4.127 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.150 0.850 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.170 0.830 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.726 5.468 20.360 21.094 hybrid contribution 0.252 0.294 -1.498 1.547 sum 0.978 5.762 18.862 19.747 Atomic orbital electron populations 1.21263 0.96278 0.97798 1.00718 1.21251 0.96072 0.98046 0.97770 1.18877 0.90823 0.91957 0.86529 1.01600 1.21424 1.31400 1.11964 0.91215 0.92358 1.25638 0.95288 0.95658 1.01659 1.70036 1.38133 1.24111 1.23407 0.85587 0.78870 0.78261 0.79086 1.20075 1.21222 1.19363 1.60589 1.48499 1.15490 1.05842 1.21709 0.93633 0.98914 0.89813 1.20042 0.87675 1.03049 0.93946 0.85405 1.23556 0.87417 0.80655 0.77347 1.90728 1.65130 1.28455 1.54566 1.86492 1.35782 1.59437 1.46451 1.23450 0.80992 1.00247 1.01560 1.19369 0.97971 0.94836 0.96692 1.21108 0.99295 0.96586 0.97781 1.21363 0.96208 1.00256 0.96417 1.21546 0.99600 0.92305 1.00211 1.21501 0.97430 0.98738 0.96020 1.21316 0.96359 0.98024 0.97042 0.93160 0.95624 0.94507 0.97103 0.92469 0.93055 0.85256 0.92674 0.94964 0.92525 0.84999 0.92541 0.87823 0.84393 0.83262 0.83032 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.07 9.53 71.98 0.69 -4.39 16 2 C -0.09 -4.86 5.59 30.60 0.17 -4.69 16 3 C 0.23 11.79 2.31 44.17 0.10 11.89 16 4 H -0.03 -1.93 7.70 -2.39 -0.02 -1.95 16 5 C -0.52 -28.60 7.21 25.60 0.18 -28.41 16 6 H 0.06 3.13 7.60 -2.91 -0.02 3.11 16 7 C 0.02 0.92 5.30 84.65 0.45 1.37 16 8 N -0.92 -53.54 11.33 21.45 0.24 -53.30 16 9 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 N -0.67 -29.31 4.84 -495.46 -2.40 -31.71 16 14 C 0.09 3.32 4.23 86.30 0.37 3.69 16 15 C -0.03 -0.82 2.58 -12.29 -0.03 -0.85 16 16 H 0.13 3.26 7.86 -2.39 -0.02 3.24 16 17 C 0.47 15.23 6.74 71.24 0.48 15.71 16 18 O -0.50 -20.01 15.06 21.97 0.33 -19.68 16 19 O -0.36 -10.04 10.48 -51.37 -0.54 -10.58 16 20 C 0.03 0.66 10.56 113.37 1.20 1.85 16 21 C -0.09 -2.27 4.71 -19.87 -0.09 -2.36 16 22 C -0.13 -3.38 8.86 22.27 0.20 -3.18 16 23 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 25 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 26 C -0.11 -2.26 9.67 22.27 0.22 -2.04 16 27 H 0.05 2.46 7.72 -2.39 -0.02 2.44 16 28 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 1.89 7.04 -2.39 -0.02 1.87 16 30 H 0.01 0.53 7.61 -2.39 -0.02 0.51 16 31 H 0.06 3.30 6.09 -2.39 -0.01 3.28 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.33 13.66 8.11 -89.69 -0.73 12.94 16 34 H 0.05 2.26 6.88 -2.39 -0.02 2.24 16 35 H 0.03 1.22 7.93 -2.38 -0.02 1.20 16 36 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 37 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 39 H 0.10 2.99 7.65 -2.91 -0.02 2.97 16 40 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 2.35 7.95 -2.91 -0.02 2.32 16 Total: -1.00 -67.71 355.16 4.52 -63.18 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.27 Total: 23.48 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.59 Total: -17.33 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.16 Total: -85.00 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.21 Total: -30.26 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.71 4.52 -63.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.239 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds