Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47769 * 2 1 4 4 H 1.09006 * 109.46752 * 305.90765 * 3 2 1 5 5 C 1.50697 * 109.47639 * 185.90674 * 3 2 1 6 6 H 1.08000 * 119.99715 * 243.25781 * 5 3 2 7 7 C 1.37878 * 119.99961 * 63.25637 * 5 3 2 8 8 N 1.31512 * 119.99998 * 195.95349 * 7 5 3 9 9 Si 1.86796 * 119.99846 * 15.95566 * 7 5 3 10 10 H 1.48505 * 109.47056 * 93.35834 * 9 7 5 11 11 H 1.48506 * 109.47098 * 213.35458 * 9 7 5 12 12 H 1.48497 * 109.47374 * 333.35289 * 9 7 5 13 13 N 1.46900 * 109.47207 * 65.90332 * 3 2 1 14 14 C 1.46899 * 111.00100 * 258.88830 * 13 3 2 15 15 C 1.53003 * 109.47297 * 175.59687 * 14 13 3 16 16 H 1.09005 * 109.47055 * 304.99963 * 15 14 13 17 17 C 1.50696 * 109.46961 * 64.99904 * 15 14 13 18 18 O 1.20826 * 120.00135 * 120.00232 * 17 15 14 19 19 O 1.34232 * 120.00240 * 299.99854 * 17 15 14 20 20 C 1.45201 * 117.00158 * 180.02562 * 19 17 15 21 21 C 1.50694 * 109.47362 * 184.99939 * 15 14 13 22 22 C 1.38232 * 120.00457 * 119.99987 * 21 15 14 23 23 C 1.38236 * 120.00486 * 179.97438 * 22 21 15 24 24 C 1.38234 * 119.99826 * 359.95670 * 23 22 21 25 25 C 1.38239 * 120.00028 * 359.97438 * 24 23 22 26 26 C 1.38228 * 119.99885 * 0.06753 * 25 24 23 27 27 H 1.08994 * 109.47228 * 175.93069 * 1 2 3 28 28 H 1.09003 * 109.47116 * 295.93829 * 1 2 3 29 29 H 1.09003 * 109.46967 * 55.93615 * 1 2 3 30 30 H 1.09001 * 109.47078 * 239.99546 * 2 1 3 31 31 H 1.09008 * 109.47150 * 120.00078 * 2 1 3 32 32 H 0.96998 * 120.00615 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99897 * 22.83842 * 13 3 2 34 34 H 1.09001 * 109.47295 * 55.60024 * 14 13 3 35 35 H 1.08995 * 109.47361 * 295.59562 * 14 13 3 36 36 H 1.08999 * 109.47178 * 299.99879 * 20 19 17 37 37 H 1.08994 * 109.47110 * 60.00709 * 20 19 17 38 38 H 1.09009 * 109.46596 * 180.02562 * 20 19 17 39 39 H 1.08006 * 119.99544 * 359.97438 * 22 21 15 40 40 H 1.07997 * 119.99727 * 179.97438 * 23 22 21 41 41 H 1.08003 * 119.99863 * 179.72347 * 24 23 22 42 42 H 1.07997 * 119.99966 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00153 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5930 1.9859 -0.8324 5 6 3.5400 1.4449 -0.1462 6 1 4.1591 1.8377 0.6467 7 6 4.1217 0.9456 -1.2922 8 7 5.4041 0.6543 -1.3054 9 14 3.0884 0.6830 -2.8260 10 1 3.1721 1.8870 -3.6913 11 1 3.5974 -0.4973 -3.5697 12 1 1.6744 0.4506 -2.4365 13 7 1.6703 2.0926 1.2643 14 6 0.4966 2.9582 1.0875 15 6 0.0759 3.5301 2.4429 16 1 -0.0880 2.7139 3.1466 17 6 1.1626 4.4338 2.9659 18 8 0.9265 5.5982 3.1854 19 8 2.3929 3.9451 3.1879 20 6 3.3896 4.8727 3.6924 21 6 -1.1984 4.3181 2.2819 22 6 -2.3318 3.9502 2.9825 23 6 -3.5007 4.6733 2.8353 24 6 -3.5359 5.7650 1.9880 25 6 -2.4021 6.1339 1.2884 26 6 -1.2336 5.4102 1.4350 27 1 -0.3633 -1.0250 -0.0729 28 1 -0.3633 0.4495 0.9242 29 1 -0.3633 0.5756 -0.8514 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.8136 0.3034 -2.1117 33 1 1.5096 1.4091 1.9889 34 1 -0.3242 2.3763 0.6682 35 1 0.7462 3.7749 0.4103 36 1 3.5221 5.6867 2.9797 37 1 3.0583 5.2773 4.6487 38 1 4.3368 4.3503 3.8271 39 1 -2.3041 3.0976 3.6450 40 1 -4.3862 4.3855 3.3824 41 1 -4.4504 6.3273 1.8695 42 1 -2.4298 6.9865 0.6261 43 1 -0.3479 5.6981 0.8881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -56.632672 kcal Electronic energy + Delta-G solvation = -23869.412316 eV Core-core repulsion = 20493.800578 eV Total energy + Delta-G solvation = -3375.611738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51367 -38.97575 -36.99101 -36.05847 -34.02672 -32.07170 -30.98186 -30.80856 -28.74063 -27.47560 -26.39856 -23.46650 -22.65451 -22.21608 -22.01203 -20.13511 -19.74186 -17.31108 -16.97036 -16.73789 -16.38416 -15.84889 -15.22903 -14.95553 -14.83788 -14.30253 -14.04482 -13.54731 -13.37506 -13.22159 -13.09007 -12.77640 -12.69904 -12.48246 -12.20435 -11.82589 -11.72756 -11.55220 -11.37912 -11.20865 -10.93363 -10.86173 -10.67221 -10.38650 -10.32117 -10.06562 -9.94493 -9.45643 -9.28876 -8.90474 -8.75751 -8.35294 -7.31503 -6.03514 -3.94164 1.27992 1.41504 2.52875 3.09961 3.28683 3.37984 3.40850 3.82547 4.45311 4.46522 4.75298 4.94414 5.03982 5.09126 5.16901 5.23316 5.25660 5.41374 5.42746 5.49558 5.52534 5.56776 5.74948 5.83781 5.85692 5.90784 5.96660 6.00087 6.03333 6.12431 6.41227 6.47736 6.49158 6.56721 6.60040 6.74874 6.77321 6.85389 6.97608 7.19057 7.78128 7.91672 8.13415 8.33515 8.74792 9.16325 9.63818 11.10005 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.005008 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.095637 B = 5589.777790 C = 6508.511144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 C 0.194 3.806 4 H 0.022 0.978 5 C -0.495 4.495 6 H 0.082 0.918 7 C 0.071 3.929 8 N -0.895 5.895 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.255 1.255 13 N -0.661 5.661 14 C 0.068 3.932 15 C -0.042 4.042 16 H 0.110 0.890 17 C 0.477 3.523 18 O -0.520 6.520 19 O -0.316 6.316 20 C 0.038 3.962 21 C -0.069 4.069 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.082 4.082 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.261 0.739 33 H 0.330 0.670 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.228 6.273 8.276 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.190 4.190 3 C 0.086 3.914 4 H 0.040 0.960 5 C -0.534 4.534 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.683 3.317 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.179 1.179 13 N -0.291 5.291 14 C -0.062 4.062 15 C -0.062 4.062 16 H 0.128 0.872 17 C 0.320 3.680 18 O -0.409 6.409 19 O -0.230 6.230 20 C -0.056 4.056 21 C -0.070 4.070 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.100 4.100 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.147 0.853 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.630 7.061 8.156 18.177 hybrid contribution -1.024 -0.669 -1.030 1.599 sum -15.654 6.392 7.126 18.349 Atomic orbital electron populations 1.21966 0.98562 1.00248 1.00471 1.22624 0.92669 1.01630 1.02040 1.19565 0.96870 0.88103 0.86908 0.96001 1.20979 0.89115 1.39581 1.03681 0.89972 1.24892 0.94690 0.94910 0.98524 1.69972 1.11523 1.43679 1.28146 0.87330 0.82132 0.77736 0.84460 1.20911 1.21528 1.17920 1.60658 1.33121 1.25680 1.09619 1.22069 0.93702 0.98021 0.92458 1.20074 0.88959 0.96687 1.00475 0.87176 1.23244 0.83448 0.87338 0.73925 1.90638 1.82566 1.18677 1.49032 1.86732 1.19431 1.41623 1.75257 1.23203 0.90529 0.93634 0.98259 1.19300 0.93495 0.96375 0.97792 1.20996 0.92599 0.99957 0.99142 1.21043 0.97790 0.96104 0.99390 1.21132 0.98249 0.97309 0.97152 1.21113 0.93000 0.99895 0.99995 1.20999 0.97888 0.94038 0.97067 0.93968 0.93566 0.93627 0.92119 0.92254 0.92886 0.85297 0.93974 0.90948 0.92290 0.92907 0.88091 0.86027 0.86148 0.86310 0.86104 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.74 37.16 0.32 -2.22 16 2 C -0.15 -3.04 4.49 -26.73 -0.12 -3.16 16 3 C 0.19 4.31 1.73 -68.87 -0.12 4.19 16 4 H 0.02 0.51 6.36 -51.93 -0.33 0.18 16 5 C -0.50 -13.52 9.29 -34.44 -0.32 -13.84 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 7 C 0.07 2.00 5.31 -17.82 -0.09 1.91 16 8 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 9 Si 0.86 20.80 25.75 -169.99 -4.38 16.43 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.76 5.48 56.52 0.31 -5.45 16 13 N -0.66 -12.47 4.93 -107.95 -0.53 -13.01 16 14 C 0.07 1.08 4.18 -3.82 -0.02 1.07 16 15 C -0.04 -0.60 2.59 -92.93 -0.24 -0.84 16 16 H 0.11 1.33 7.86 -51.93 -0.41 0.92 16 17 C 0.48 7.81 7.12 36.00 0.26 8.07 16 18 O -0.52 -9.32 14.85 -18.75 -0.28 -9.60 16 19 O -0.32 -5.32 9.45 -39.26 -0.37 -5.69 16 20 C 0.04 0.53 10.56 101.05 1.07 1.59 16 21 C -0.07 -0.93 4.40 -104.63 -0.46 -1.39 16 22 C -0.11 -1.26 9.67 -39.58 -0.38 -1.65 16 23 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 24 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 25 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.08 -1.13 7.98 -39.58 -0.32 -1.44 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.67 6.50 -51.93 -0.34 0.33 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.33 4.86 -51.93 -0.25 1.08 16 31 H 0.06 1.18 8.01 -51.92 -0.42 0.76 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.33 5.74 7.96 -39.29 -0.31 5.43 16 34 H 0.04 0.64 5.97 -51.93 -0.31 0.33 16 35 H 0.07 1.26 7.57 -51.93 -0.39 0.86 16 36 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 37 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 38 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 39 H 0.12 1.15 7.95 -52.48 -0.42 0.74 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.12 1.74 7.58 -52.49 -0.40 1.34 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -31.67 346.70 -7.78 -39.45 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.61 Total: 6.32 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -1.62 Total: -12.93 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.24 Total: -39.20 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.65 Total: -15.29 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.38 Total: 16.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.67 -7.78 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.185 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds