Wall clock time and date at job start Tue Mar 31 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47769 * 2 1 4 4 H 1.09006 * 109.46752 * 305.90765 * 3 2 1 5 5 C 1.50697 * 109.47639 * 185.90674 * 3 2 1 6 6 H 1.08000 * 119.99715 * 243.25781 * 5 3 2 7 7 C 1.37878 * 119.99961 * 63.25637 * 5 3 2 8 8 N 1.31512 * 119.99998 * 195.95349 * 7 5 3 9 9 Si 1.86796 * 119.99846 * 15.95566 * 7 5 3 10 10 H 1.48505 * 109.47056 * 93.35834 * 9 7 5 11 11 H 1.48506 * 109.47098 * 213.35458 * 9 7 5 12 12 H 1.48497 * 109.47374 * 333.35289 * 9 7 5 13 13 N 1.46900 * 109.47207 * 65.90332 * 3 2 1 14 14 C 1.46899 * 111.00100 * 258.88830 * 13 3 2 15 15 C 1.53003 * 109.47297 * 175.59687 * 14 13 3 16 16 H 1.09005 * 109.47055 * 304.99963 * 15 14 13 17 17 C 1.50696 * 109.46961 * 64.99904 * 15 14 13 18 18 O 1.20826 * 120.00135 * 120.00232 * 17 15 14 19 19 O 1.34232 * 120.00240 * 299.99854 * 17 15 14 20 20 C 1.45201 * 117.00158 * 180.02562 * 19 17 15 21 21 C 1.50694 * 109.47362 * 184.99939 * 15 14 13 22 22 C 1.38232 * 120.00457 * 119.99987 * 21 15 14 23 23 C 1.38236 * 120.00486 * 179.97438 * 22 21 15 24 24 C 1.38234 * 119.99826 * 359.95670 * 23 22 21 25 25 C 1.38239 * 120.00028 * 359.97438 * 24 23 22 26 26 C 1.38228 * 119.99885 * 0.06753 * 25 24 23 27 27 H 1.08994 * 109.47228 * 175.93069 * 1 2 3 28 28 H 1.09003 * 109.47116 * 295.93829 * 1 2 3 29 29 H 1.09003 * 109.46967 * 55.93615 * 1 2 3 30 30 H 1.09001 * 109.47078 * 239.99546 * 2 1 3 31 31 H 1.09008 * 109.47150 * 120.00078 * 2 1 3 32 32 H 0.96998 * 120.00615 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99897 * 22.83842 * 13 3 2 34 34 H 1.09001 * 109.47295 * 55.60024 * 14 13 3 35 35 H 1.08995 * 109.47361 * 295.59562 * 14 13 3 36 36 H 1.08999 * 109.47178 * 299.99879 * 20 19 17 37 37 H 1.08994 * 109.47110 * 60.00709 * 20 19 17 38 38 H 1.09009 * 109.46596 * 180.02562 * 20 19 17 39 39 H 1.08006 * 119.99544 * 359.97438 * 22 21 15 40 40 H 1.07997 * 119.99727 * 179.97438 * 23 22 21 41 41 H 1.08003 * 119.99863 * 179.72347 * 24 23 22 42 42 H 1.07997 * 119.99966 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00153 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5930 1.9859 -0.8324 5 6 3.5400 1.4449 -0.1462 6 1 4.1591 1.8377 0.6467 7 6 4.1217 0.9456 -1.2922 8 7 5.4041 0.6543 -1.3054 9 14 3.0884 0.6830 -2.8260 10 1 3.1721 1.8870 -3.6913 11 1 3.5974 -0.4973 -3.5697 12 1 1.6744 0.4506 -2.4365 13 7 1.6703 2.0926 1.2643 14 6 0.4966 2.9582 1.0875 15 6 0.0759 3.5301 2.4429 16 1 -0.0880 2.7139 3.1466 17 6 1.1626 4.4338 2.9659 18 8 0.9265 5.5982 3.1854 19 8 2.3929 3.9451 3.1879 20 6 3.3896 4.8727 3.6924 21 6 -1.1984 4.3181 2.2819 22 6 -2.3318 3.9502 2.9825 23 6 -3.5007 4.6733 2.8353 24 6 -3.5359 5.7650 1.9880 25 6 -2.4021 6.1339 1.2884 26 6 -1.2336 5.4102 1.4350 27 1 -0.3633 -1.0250 -0.0729 28 1 -0.3633 0.4495 0.9242 29 1 -0.3633 0.5756 -0.8514 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.8136 0.3034 -2.1117 33 1 1.5096 1.4091 1.9889 34 1 -0.3242 2.3763 0.6682 35 1 0.7462 3.7749 0.4103 36 1 3.5221 5.6867 2.9797 37 1 3.0583 5.2773 4.6487 38 1 4.3368 4.3503 3.8271 39 1 -2.3041 3.0976 3.6450 40 1 -4.3862 4.3855 3.3824 41 1 -4.4504 6.3273 1.8695 42 1 -2.4298 6.9865 0.6261 43 1 -0.3479 5.6981 0.8881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:42 Heat of formation + Delta-G solvation = -76.003030 kcal Electronic energy + Delta-G solvation = -23870.252278 eV Core-core repulsion = 20493.800578 eV Total energy + Delta-G solvation = -3376.451699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.71529 -39.96358 -38.52637 -37.34066 -35.39914 -34.03075 -32.17519 -31.75676 -30.01604 -28.96055 -27.76061 -24.96376 -23.82620 -23.45087 -23.05694 -21.73913 -21.00662 -18.84710 -18.47736 -17.98286 -17.53455 -17.11906 -16.74826 -16.17669 -16.09485 -15.61409 -15.50576 -14.79735 -14.74284 -14.41986 -14.25116 -14.13336 -14.04022 -13.69492 -13.39961 -13.34720 -13.25006 -12.83062 -12.63692 -12.58128 -12.36900 -12.31637 -11.90678 -11.83921 -11.61950 -11.60142 -11.40831 -11.24644 -11.17846 -10.49730 -9.76962 -9.66553 -8.85208 -8.21839 -6.16195 0.38706 0.54857 1.25336 1.34498 1.39713 1.47310 1.96412 2.39722 2.91564 3.11294 3.31402 3.69768 3.89964 4.04314 4.10971 4.18875 4.23729 4.31751 4.32930 4.36107 4.37836 4.43918 4.53996 4.60961 4.65225 4.70712 4.75917 4.85135 4.92736 5.07725 5.14938 5.18033 5.22473 5.28172 5.53779 5.57545 5.58668 5.64578 5.68241 5.80042 6.10122 6.13302 6.74390 6.86274 6.90271 6.91540 7.46160 8.95662 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.005008 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.095637 B = 5589.777790 C = 6508.511144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.200 3.800 4 H 0.018 0.982 5 C -0.497 4.497 6 H 0.035 0.965 7 C 0.014 3.986 8 N -0.947 5.947 9 Si 0.920 3.080 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.224 1.224 13 N -0.671 5.671 14 C 0.076 3.924 15 C -0.032 4.032 16 H 0.136 0.864 17 C 0.473 3.527 18 O -0.540 6.540 19 O -0.335 6.335 20 C 0.033 3.967 21 C -0.087 4.087 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.133 4.133 26 C -0.107 4.107 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.261 0.739 33 H 0.340 0.660 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.133 0.867 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.130 5.725 8.781 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.091 3.909 4 H 0.035 0.965 5 C -0.536 4.536 6 H 0.053 0.947 7 C -0.183 4.183 8 N -0.588 5.588 9 Si 0.745 3.255 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.147 1.147 13 N -0.302 5.302 14 C -0.053 4.053 15 C -0.051 4.051 16 H 0.154 0.846 17 C 0.317 3.683 18 O -0.431 6.431 19 O -0.250 6.250 20 C -0.061 4.061 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.151 4.151 26 C -0.125 4.125 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.163 0.837 40 H 0.169 0.831 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.560 6.516 8.683 21.502 hybrid contribution 0.236 -0.397 -1.068 1.164 sum -18.324 6.119 7.615 20.766 Atomic orbital electron populations 1.21877 0.94966 1.01951 1.01628 1.22461 0.95815 0.99270 1.01180 1.19324 0.93382 0.89935 0.88279 0.96461 1.21294 0.91877 1.38191 1.02238 0.94686 1.25694 0.95753 0.94988 1.01826 1.70124 1.13762 1.45815 1.29060 0.86291 0.82065 0.77234 0.79898 1.21225 1.21586 1.14658 1.60398 1.35406 1.25984 1.08460 1.21960 0.92878 0.96921 0.93568 1.20058 0.88552 0.97000 0.99509 0.84617 1.23772 0.83630 0.87473 0.73400 1.90616 1.82836 1.19629 1.49998 1.86716 1.20107 1.42703 1.75452 1.23368 0.90702 0.93340 0.98689 1.19309 0.93729 0.96733 0.98976 1.21303 0.92139 1.00710 0.98832 1.21460 0.98432 0.95432 0.98912 1.21515 0.98659 0.97370 0.96183 1.21347 0.92934 1.00205 1.00608 1.21012 0.98091 0.95299 0.98083 0.91850 0.91470 0.93613 0.93938 0.92350 0.92968 0.84123 0.92161 0.92994 0.93142 0.91265 0.86862 0.83718 0.83107 0.83539 0.84868 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 8.74 71.98 0.63 -3.62 16 2 C -0.15 -5.69 4.49 30.59 0.14 -5.55 16 3 C 0.20 8.79 1.73 44.17 0.08 8.86 16 4 H 0.02 0.79 6.36 -2.38 -0.02 0.77 16 5 C -0.50 -27.98 9.29 25.60 0.24 -27.75 16 6 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 7 C 0.01 0.81 5.31 84.66 0.45 1.26 16 8 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 9 Si 0.92 43.30 25.75 68.60 1.77 45.07 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.22 -9.33 5.48 99.48 0.55 -8.79 16 13 N -0.67 -24.97 4.93 -495.46 -2.44 -27.41 16 14 C 0.08 2.36 4.18 86.30 0.36 2.72 16 15 C -0.03 -0.86 2.59 -12.29 -0.03 -0.89 16 16 H 0.14 2.89 7.86 -2.38 -0.02 2.88 16 17 C 0.47 15.45 7.12 71.23 0.51 15.96 16 18 O -0.54 -19.55 14.85 21.96 0.33 -19.23 16 19 O -0.34 -11.42 9.45 -51.44 -0.49 -11.91 16 20 C 0.03 0.93 10.56 113.37 1.20 2.12 16 21 C -0.09 -2.19 4.40 -19.87 -0.09 -2.28 16 22 C -0.11 -2.22 9.67 22.27 0.22 -2.01 16 23 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 24 C -0.12 -2.14 10.05 22.27 0.22 -1.91 16 25 C -0.13 -2.94 10.05 22.27 0.22 -2.71 16 26 C -0.11 -2.88 7.98 22.27 0.18 -2.70 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.66 6.50 -2.39 -0.02 1.64 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.78 4.86 -2.39 -0.01 1.76 16 31 H 0.06 2.23 8.01 -2.38 -0.02 2.21 16 32 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.34 11.36 7.96 -89.70 -0.71 10.65 16 34 H 0.06 1.67 5.97 -2.39 -0.01 1.66 16 35 H 0.05 1.82 7.57 -2.39 -0.02 1.80 16 36 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 37 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 38 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 39 H 0.15 2.11 7.95 -2.91 -0.02 2.09 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.10 3.00 7.58 -2.91 -0.02 2.98 16 Total: -1.00 -71.43 346.70 4.13 -67.30 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.13 Total: 25.48 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 4.54 Total: -20.39 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -2.14 Total: -86.32 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.16 Total: -31.14 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.77 Total: 45.07 kcal Total: -71.43 4.13 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.706 kcal (2) G-P(sol) polarization free energy of solvation -71.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds