Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47281 * 2 1 4 4 H 1.09005 * 109.47180 * 54.54788 * 3 2 1 5 5 C 1.50701 * 109.47555 * 174.54662 * 3 2 1 6 6 H 1.07994 * 120.00466 * 119.99752 * 5 3 2 7 7 C 1.37876 * 119.99517 * 300.00415 * 5 3 2 8 8 N 1.31519 * 120.00492 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99794 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47206 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46978 * 119.99886 * 9 7 5 12 12 H 1.48499 * 109.46934 * 239.99826 * 9 7 5 13 13 N 1.46898 * 109.47113 * 294.54676 * 3 2 1 14 14 C 1.46909 * 111.00077 * 154.44506 * 13 3 2 15 15 C 1.50701 * 109.46809 * 174.76133 * 14 13 3 16 16 C 1.38256 * 119.99833 * 269.72110 * 15 14 13 17 17 C 1.38220 * 119.99735 * 179.81813 * 16 15 14 18 18 C 1.38256 * 119.99947 * 0.39304 * 17 16 15 19 19 C 1.38215 * 119.99957 * 359.86177 * 18 17 16 20 20 C 1.50703 * 119.99948 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47026 * 269.97599 * 20 19 18 22 22 O 1.20826 * 120.00046 * 0.02562 * 21 20 19 23 23 O 1.34229 * 119.99738 * 179.97438 * 21 20 19 24 24 C 1.45208 * 116.99831 * 180.02562 * 23 21 20 25 25 C 1.38213 * 119.99806 * 90.00365 * 15 14 13 26 26 H 1.09002 * 109.46902 * 305.91517 * 1 2 3 27 27 H 1.09002 * 109.47202 * 65.91037 * 1 2 3 28 28 H 1.08995 * 109.47388 * 185.91671 * 1 2 3 29 29 H 1.08999 * 109.46656 * 240.00198 * 2 1 3 30 30 H 1.08996 * 109.47423 * 120.00010 * 2 1 3 31 31 H 0.96991 * 120.00140 * 180.02562 * 8 7 5 32 32 H 1.00895 * 111.00614 * 30.49233 * 13 3 2 33 33 H 1.08999 * 109.46779 * 294.75976 * 14 13 3 34 34 H 1.08997 * 109.47113 * 54.76006 * 14 13 3 35 35 H 1.07995 * 120.00145 * 0.02562 * 16 15 14 36 36 H 1.07994 * 120.00098 * 180.23670 * 17 16 15 37 37 H 1.07994 * 120.00341 * 179.83467 * 18 17 16 38 38 H 1.08998 * 109.47268 * 29.98053 * 20 19 18 39 39 H 1.08996 * 109.47068 * 149.98209 * 20 19 18 40 40 H 1.09001 * 109.46741 * 180.02562 * 24 23 21 41 41 H 1.08999 * 109.46692 * 299.99533 * 24 23 21 42 42 H 1.08993 * 109.47305 * 59.99820 * 24 23 21 43 43 H 1.07998 * 120.00110 * 359.97233 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9837 0.8372 5 6 3.5410 1.4447 0.1350 6 1 4.1520 1.8871 -0.6377 7 6 4.1340 0.8816 1.2451 8 7 3.3899 0.3431 2.1864 9 14 5.9946 0.8837 1.4122 10 1 6.5973 1.5447 0.2270 11 1 6.3803 1.6226 2.6413 12 1 6.4851 -0.5151 1.5011 13 7 1.6608 2.0959 -1.2598 14 6 1.5679 3.5522 -1.0904 15 6 1.3045 4.1976 -2.4265 16 6 2.3626 4.5956 -3.2225 17 6 2.1210 5.1840 -4.4496 18 6 0.8213 5.3820 -4.8775 19 6 -0.2364 4.9888 -4.0794 20 6 -1.6532 5.2051 -4.5455 21 6 -2.1339 6.5559 -4.0814 22 8 -1.4012 7.2699 -3.4386 23 8 -3.3759 6.9663 -4.3831 24 6 -3.7711 8.2788 -3.9039 25 6 0.0052 4.3968 -2.8535 26 1 -0.3633 0.6028 0.8323 27 1 -0.3634 0.4195 -0.9382 28 1 -0.3634 -1.0221 0.1059 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8071 -0.0527 2.9674 32 1 0.7965 1.7177 -1.6175 33 1 0.7524 3.7871 -0.4063 34 1 2.5050 3.9310 -0.6823 35 1 3.3778 4.4437 -2.8870 36 1 2.9474 5.4915 -5.0731 37 1 0.6324 5.8442 -5.8351 38 1 -1.6883 5.1612 -5.6340 39 1 -2.2950 4.4286 -4.1296 40 1 -4.7948 8.4862 -4.2156 41 1 -3.7114 8.3013 -2.8158 42 1 -3.1040 9.0336 -4.3201 43 1 -0.8213 4.0896 -2.2299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = -70.990549 kcal Electronic energy + Delta-G solvation = -22691.548831 eV Core-core repulsion = 19315.314490 eV Total energy + Delta-G solvation = -3376.234342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.70692 -39.14574 -36.71447 -36.22906 -33.52898 -32.46037 -31.53153 -29.90753 -28.86682 -26.98794 -26.64402 -24.48666 -22.57979 -22.32802 -21.30222 -20.02676 -19.48246 -17.81271 -16.82359 -16.73999 -16.28220 -16.15583 -15.29480 -14.87911 -14.75823 -14.25814 -13.91060 -13.78549 -13.58599 -13.07930 -13.02679 -12.56635 -12.54159 -12.28867 -12.23994 -12.01225 -11.85820 -11.32297 -11.22220 -11.03234 -10.93132 -10.78250 -10.69851 -10.65024 -10.54442 -9.95108 -9.68722 -9.61855 -9.08256 -8.61526 -8.40133 -8.33515 -7.21034 -5.95452 -3.99420 1.45729 1.63457 2.05090 2.61252 3.32484 3.40484 3.45686 3.99501 4.46647 4.48169 4.76590 4.81049 4.84235 4.92359 5.11488 5.21745 5.25663 5.27558 5.32346 5.37582 5.59801 5.70670 5.81578 5.98147 6.13142 6.16127 6.17466 6.20894 6.32503 6.41514 6.53533 6.64620 6.68904 6.84779 6.99730 7.09455 7.20131 7.23519 7.49947 7.58213 7.79097 7.93553 8.30058 8.40603 8.76929 9.08843 9.65604 11.10000 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.003225 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.477384 B = 8680.023039 C = 9298.382420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.679 5.679 14 C 0.102 3.898 15 C -0.061 4.061 16 C -0.090 4.090 17 C -0.122 4.122 18 C -0.113 4.113 19 C -0.088 4.088 20 C -0.068 4.068 21 C 0.458 3.542 22 O -0.494 6.494 23 O -0.364 6.364 24 C 0.035 3.965 25 C -0.100 4.100 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.258 0.742 32 H 0.317 0.683 33 H 0.023 0.977 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.563 10.855 -13.688 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.311 5.311 14 C -0.028 4.028 15 C -0.061 4.061 16 C -0.109 4.109 17 C -0.140 4.140 18 C -0.131 4.131 19 C -0.088 4.088 20 C -0.105 4.105 21 C 0.300 3.700 22 O -0.379 6.379 23 O -0.281 6.281 24 C -0.058 4.058 25 C -0.118 4.118 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.041 0.959 34 H 0.102 0.898 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.678 11.027 -13.520 20.994 hybrid contribution 0.116 0.233 0.800 0.841 sum -11.562 11.261 -12.720 20.550 Atomic orbital electron populations 1.21882 0.99633 0.99729 0.99503 1.21760 0.91209 1.00296 1.03097 1.19190 0.95543 0.89984 0.84222 0.98044 1.21249 0.91230 1.36300 1.04241 0.91983 1.24966 0.98108 0.95678 0.95861 1.69880 1.34601 1.39610 1.09594 0.86499 0.85826 0.77584 0.77842 1.19769 1.21265 1.21159 1.60720 1.36204 1.01064 1.33064 1.20830 1.00940 0.90322 0.90673 1.20065 0.92465 0.96507 0.97076 1.21150 0.99423 0.96629 0.93703 1.21062 0.96338 0.99973 0.96609 1.20819 0.92557 1.00368 0.99350 1.19080 0.92576 1.01468 0.95699 1.20282 0.94929 0.91734 1.03596 1.23840 0.79510 0.89366 0.77288 1.90716 1.55489 1.55734 1.36011 1.86504 1.32921 1.36482 1.72216 1.23247 1.00897 0.81405 1.00288 1.20853 0.96721 0.99219 0.95051 0.93923 0.94622 0.94366 0.94009 0.88227 0.93159 0.86571 0.95871 0.89818 0.85639 0.86261 0.86759 0.86923 0.86814 0.88182 0.91869 0.91960 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.64 37.16 0.36 -2.53 16 2 C -0.13 -2.94 5.36 -26.73 -0.14 -3.08 16 3 C 0.22 5.39 2.02 -68.87 -0.14 5.25 16 4 H 0.00 0.05 7.85 -51.93 -0.41 -0.35 16 5 C -0.49 -13.50 8.57 -34.44 -0.30 -13.80 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.50 11.29 55.43 0.63 -24.88 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 N -0.68 -14.41 6.26 -109.21 -0.68 -15.09 16 14 C 0.10 1.96 5.58 -4.97 -0.03 1.93 16 15 C -0.06 -1.01 5.44 -104.62 -0.57 -1.58 16 16 C -0.09 -1.43 9.70 -39.58 -0.38 -1.82 16 17 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 18 C -0.11 -1.42 9.70 -39.58 -0.38 -1.81 16 19 C -0.09 -1.13 4.37 -104.62 -0.46 -1.59 16 20 C -0.07 -0.65 5.94 -29.03 -0.17 -0.82 16 21 C 0.46 5.31 7.95 36.01 0.29 5.59 16 22 O -0.49 -7.48 15.78 -18.75 -0.30 -7.78 16 23 O -0.36 -3.63 10.57 -39.26 -0.41 -4.04 16 24 C 0.04 0.27 10.56 101.05 1.07 1.33 16 25 C -0.10 -1.48 9.36 -39.58 -0.37 -1.85 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.61 6.65 -51.93 -0.35 0.27 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.32 6.19 6.63 -39.29 -0.26 5.93 16 33 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.08 1.74 7.88 -51.93 -0.41 1.34 16 35 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.11 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.11 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 42 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 43 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -31.37 360.68 -8.84 -40.21 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.76 Total: 5.05 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -1.72 Total: -15.41 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.06 Total: -39.97 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.71 Total: -11.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.37 -8.84 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.781 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds