Wall clock time and date at job start Tue Mar 31 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47281 * 2 1 4 4 H 1.09005 * 109.47180 * 54.54788 * 3 2 1 5 5 C 1.50701 * 109.47555 * 174.54662 * 3 2 1 6 6 H 1.07994 * 120.00466 * 119.99752 * 5 3 2 7 7 C 1.37876 * 119.99517 * 300.00415 * 5 3 2 8 8 N 1.31519 * 120.00492 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99794 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47206 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46978 * 119.99886 * 9 7 5 12 12 H 1.48499 * 109.46934 * 239.99826 * 9 7 5 13 13 N 1.46898 * 109.47113 * 294.54676 * 3 2 1 14 14 C 1.46909 * 111.00077 * 154.44506 * 13 3 2 15 15 C 1.50701 * 109.46809 * 174.76133 * 14 13 3 16 16 C 1.38256 * 119.99833 * 269.72110 * 15 14 13 17 17 C 1.38220 * 119.99735 * 179.81813 * 16 15 14 18 18 C 1.38256 * 119.99947 * 0.39304 * 17 16 15 19 19 C 1.38215 * 119.99957 * 359.86177 * 18 17 16 20 20 C 1.50703 * 119.99948 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47026 * 269.97599 * 20 19 18 22 22 O 1.20826 * 120.00046 * 0.02562 * 21 20 19 23 23 O 1.34229 * 119.99738 * 179.97438 * 21 20 19 24 24 C 1.45208 * 116.99831 * 180.02562 * 23 21 20 25 25 C 1.38213 * 119.99806 * 90.00365 * 15 14 13 26 26 H 1.09002 * 109.46902 * 305.91517 * 1 2 3 27 27 H 1.09002 * 109.47202 * 65.91037 * 1 2 3 28 28 H 1.08995 * 109.47388 * 185.91671 * 1 2 3 29 29 H 1.08999 * 109.46656 * 240.00198 * 2 1 3 30 30 H 1.08996 * 109.47423 * 120.00010 * 2 1 3 31 31 H 0.96991 * 120.00140 * 180.02562 * 8 7 5 32 32 H 1.00895 * 111.00614 * 30.49233 * 13 3 2 33 33 H 1.08999 * 109.46779 * 294.75976 * 14 13 3 34 34 H 1.08997 * 109.47113 * 54.76006 * 14 13 3 35 35 H 1.07995 * 120.00145 * 0.02562 * 16 15 14 36 36 H 1.07994 * 120.00098 * 180.23670 * 17 16 15 37 37 H 1.07994 * 120.00341 * 179.83467 * 18 17 16 38 38 H 1.08998 * 109.47268 * 29.98053 * 20 19 18 39 39 H 1.08996 * 109.47068 * 149.98209 * 20 19 18 40 40 H 1.09001 * 109.46741 * 180.02562 * 24 23 21 41 41 H 1.08999 * 109.46692 * 299.99533 * 24 23 21 42 42 H 1.08993 * 109.47305 * 59.99820 * 24 23 21 43 43 H 1.07998 * 120.00110 * 359.97233 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9837 0.8372 5 6 3.5410 1.4447 0.1350 6 1 4.1520 1.8871 -0.6377 7 6 4.1340 0.8816 1.2451 8 7 3.3899 0.3431 2.1864 9 14 5.9946 0.8837 1.4122 10 1 6.5973 1.5447 0.2270 11 1 6.3803 1.6226 2.6413 12 1 6.4851 -0.5151 1.5011 13 7 1.6608 2.0959 -1.2598 14 6 1.5679 3.5522 -1.0904 15 6 1.3045 4.1976 -2.4265 16 6 2.3626 4.5956 -3.2225 17 6 2.1210 5.1840 -4.4496 18 6 0.8213 5.3820 -4.8775 19 6 -0.2364 4.9888 -4.0794 20 6 -1.6532 5.2051 -4.5455 21 6 -2.1339 6.5559 -4.0814 22 8 -1.4012 7.2699 -3.4386 23 8 -3.3759 6.9663 -4.3831 24 6 -3.7711 8.2788 -3.9039 25 6 0.0052 4.3968 -2.8535 26 1 -0.3633 0.6028 0.8323 27 1 -0.3634 0.4195 -0.9382 28 1 -0.3634 -1.0221 0.1059 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8071 -0.0527 2.9674 32 1 0.7965 1.7177 -1.6175 33 1 0.7524 3.7871 -0.4063 34 1 2.5050 3.9310 -0.6823 35 1 3.3778 4.4437 -2.8870 36 1 2.9474 5.4915 -5.0731 37 1 0.6324 5.8442 -5.8351 38 1 -1.6883 5.1612 -5.6340 39 1 -2.2950 4.4286 -4.1296 40 1 -4.7948 8.4862 -4.2156 41 1 -3.7114 8.3013 -2.8158 42 1 -3.1040 9.0336 -4.3201 43 1 -0.8213 4.0896 -2.2299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:45 Heat of formation + Delta-G solvation = -89.049102 kcal Electronic energy + Delta-G solvation = -22692.331909 eV Core-core repulsion = 19315.314490 eV Total energy + Delta-G solvation = -3377.017419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58386 -40.24346 -38.11694 -37.46600 -34.98750 -33.91592 -33.15965 -31.32276 -29.73249 -28.57273 -27.70645 -26.10521 -24.35601 -23.32765 -22.37688 -21.52288 -20.99024 -18.64612 -18.38912 -17.73221 -17.55826 -17.15412 -16.81154 -16.51843 -16.09256 -15.73500 -15.51146 -14.71369 -14.58328 -14.45116 -14.13959 -14.05554 -14.03760 -13.54736 -13.28523 -13.07598 -13.04812 -12.90368 -12.83803 -12.74439 -12.51744 -12.07505 -11.97611 -11.91632 -11.79043 -11.58256 -11.54120 -11.34960 -11.05438 -10.43947 -9.71204 -9.56824 -9.01804 -8.07491 -6.19371 0.38626 0.51571 1.20298 1.39369 1.41371 1.53382 1.85111 2.43424 2.89338 3.17693 3.59242 3.72994 3.98328 4.00165 4.07521 4.24470 4.31403 4.32465 4.37830 4.42177 4.50211 4.56992 4.62445 4.65456 4.69591 4.72312 4.77154 4.84816 5.09173 5.12305 5.18797 5.23928 5.36142 5.40489 5.56380 5.59004 5.60499 5.73737 5.81489 5.89496 6.13502 6.35046 6.47102 6.75452 6.93875 6.98080 7.49579 8.95964 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.003225 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.477384 B = 8680.023039 C = 9298.382420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.224 3.776 4 H -0.032 1.032 5 C -0.510 4.510 6 H 0.049 0.951 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.677 5.677 14 C 0.110 3.890 15 C -0.082 4.082 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.085 4.085 20 C -0.065 4.065 21 C 0.461 3.539 22 O -0.538 6.538 23 O -0.362 6.362 24 C 0.028 3.972 25 C -0.109 4.109 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.021 0.979 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 11.282 -16.118 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.116 3.884 4 H -0.015 1.015 5 C -0.549 4.549 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.309 5.309 14 C -0.019 4.019 15 C -0.083 4.083 16 C -0.132 4.132 17 C -0.140 4.140 18 C -0.128 4.128 19 C -0.086 4.086 20 C -0.102 4.102 21 C 0.306 3.694 22 O -0.427 6.427 23 O -0.279 6.279 24 C -0.065 4.065 25 C -0.128 4.128 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.133 11.453 -15.973 23.638 hybrid contribution 0.486 0.187 1.502 1.589 sum -12.647 11.640 -14.471 22.469 Atomic orbital electron populations 1.21748 0.96176 1.01212 1.00496 1.21580 0.94323 0.98713 1.01259 1.18971 0.94136 0.90784 0.84545 1.01454 1.21491 0.92787 1.36443 1.04205 0.93317 1.25685 1.02330 0.95343 0.95563 1.70004 1.36166 1.39965 1.09895 0.85543 0.80781 0.77753 0.77763 1.19557 1.20801 1.20440 1.60600 1.37019 1.02203 1.31056 1.20670 0.99376 0.89211 0.92685 1.19842 0.93969 0.98378 0.96103 1.21181 0.98664 0.98206 0.95104 1.21344 0.97941 0.98983 0.95699 1.21272 0.91903 0.99109 1.00483 1.19420 0.94728 0.99779 0.94624 1.20405 0.92903 0.91116 1.05765 1.24195 0.79493 0.89564 0.76183 1.90713 1.56686 1.57174 1.38147 1.86499 1.31978 1.37510 1.71864 1.23508 1.02696 0.80333 0.99958 1.20983 0.95858 0.99701 0.96211 0.94568 0.92294 0.92265 0.94414 0.91345 0.93054 0.85273 0.96106 0.92587 0.86978 0.83865 0.83414 0.83389 0.84627 0.84908 0.92626 0.92085 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 9.64 71.98 0.69 -4.53 16 2 C -0.12 -5.74 5.36 30.59 0.16 -5.57 16 3 C 0.22 11.49 2.02 44.17 0.09 11.58 16 4 H -0.03 -1.83 7.85 -2.38 -0.02 -1.85 16 5 C -0.51 -29.09 8.57 25.60 0.22 -28.87 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.50 5.29 84.65 0.45 0.94 16 8 N -0.92 -53.69 11.29 21.45 0.24 -53.45 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.68 -29.51 6.26 -499.44 -3.12 -32.63 16 14 C 0.11 4.44 5.58 85.56 0.48 4.91 16 15 C -0.08 -2.80 5.44 -19.87 -0.11 -2.91 16 16 C -0.11 -3.62 9.70 22.27 0.22 -3.41 16 17 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 18 C -0.11 -2.44 9.70 22.27 0.22 -2.23 16 19 C -0.09 -1.98 4.37 -19.86 -0.09 -2.07 16 20 C -0.07 -1.00 5.94 29.10 0.17 -0.83 16 21 C 0.46 9.56 7.95 71.24 0.57 10.13 16 22 O -0.54 -15.64 15.78 21.96 0.35 -15.29 16 23 O -0.36 -6.24 10.57 -51.41 -0.54 -6.78 16 24 C 0.03 0.37 10.56 113.37 1.20 1.56 16 25 C -0.11 -3.12 9.36 22.27 0.21 -2.91 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.93 6.65 -2.39 -0.02 1.91 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 3.72 5.94 -2.39 -0.01 3.70 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.33 12.81 6.63 -89.70 -0.59 12.22 16 33 H 0.02 0.83 8.08 -2.39 -0.02 0.82 16 34 H 0.06 2.52 7.88 -2.39 -0.02 2.50 16 35 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.15 1.28 8.09 -2.39 -0.02 1.26 16 39 H 0.14 1.56 8.09 -2.39 -0.02 1.54 16 40 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 42 H 0.06 0.81 8.13 -2.39 -0.02 0.80 16 43 H 0.12 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.41 360.68 4.04 -66.37 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.40 Total: 21.81 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 4.70 Total: -27.07 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.88 Total: -86.08 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.20 Total: -22.07 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -70.41 4.04 -66.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.680 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds