Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47373 * 2 1 4 4 H 1.08994 * 109.47236 * 174.77309 * 3 2 1 5 5 C 1.50698 * 109.46893 * 54.76980 * 3 2 1 6 6 H 1.07999 * 120.00244 * 239.99566 * 5 3 2 7 7 C 1.37878 * 119.99755 * 60.00426 * 5 3 2 8 8 N 1.31514 * 120.00460 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99905 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47002 * 59.99954 * 9 7 5 11 11 H 1.48503 * 109.46891 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47261 * 300.00012 * 9 7 5 13 13 N 1.46902 * 109.47099 * 294.77286 * 3 2 1 14 14 C 1.46900 * 111.00103 * 276.34121 * 13 3 2 15 15 C 1.52998 * 109.47298 * 176.37313 * 14 13 3 16 16 C 1.50700 * 109.47182 * 180.02562 * 15 14 13 17 17 C 1.37967 * 120.07023 * 259.50945 * 16 15 14 18 18 C 1.38351 * 120.14506 * 179.97438 * 17 16 15 19 19 C 1.38391 * 120.30567 * 0.04666 * 18 17 16 20 20 C 1.37926 * 120.14894 * 359.97438 * 19 18 17 21 21 C 1.39603 * 120.07763 * 79.23129 * 16 15 14 22 22 C 1.47725 * 120.14751 * 0.02562 * 21 16 15 23 23 O 1.21465 * 120.00487 * 5.35607 * 22 21 16 24 24 O 1.34718 * 119.99604 * 185.36057 * 22 21 16 25 25 C 1.45200 * 116.99851 * 179.97438 * 24 22 21 26 26 H 1.09002 * 109.47124 * 178.84427 * 1 2 3 27 27 H 1.09002 * 109.47206 * 58.84359 * 1 2 3 28 28 H 1.09002 * 109.46858 * 298.84764 * 1 2 3 29 29 H 1.09001 * 109.47138 * 120.00570 * 2 1 3 30 30 H 1.09004 * 109.46819 * 239.99882 * 2 1 3 31 31 H 0.96992 * 120.00437 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99849 * 40.29534 * 13 3 2 33 33 H 1.09002 * 109.46653 * 296.37000 * 14 13 3 34 34 H 1.08996 * 109.47243 * 56.36896 * 14 13 3 35 35 H 1.09001 * 109.46613 * 299.99829 * 15 14 13 36 36 H 1.08996 * 109.47314 * 59.99626 * 15 14 13 37 37 H 1.07994 * 119.93210 * 0.02562 * 17 16 15 38 38 H 1.07999 * 119.84487 * 180.02562 * 18 17 16 39 39 H 1.07994 * 119.92639 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.07540 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47186 * 59.99926 * 25 24 22 42 42 H 1.09000 * 109.47143 * 180.02562 * 25 24 22 43 43 H 1.09009 * 109.46915 * 299.99666 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1260 1.4439 0.0936 5 6 1.4348 2.1892 1.1606 6 1 0.8259 3.0632 0.9819 7 6 1.6585 1.7568 2.4506 8 7 2.3996 0.6925 2.6682 9 14 0.9088 2.6829 3.8892 10 1 -0.5708 2.6815 3.7619 11 1 1.2963 2.0202 5.1604 12 1 1.4043 4.0828 3.8891 13 7 1.6562 2.0976 -1.2576 14 6 2.6178 1.7922 -2.3252 15 6 2.1379 2.4154 -3.6375 16 6 3.1241 2.1016 -4.7329 17 6 4.0450 3.0504 -5.1267 18 6 4.9515 2.7638 -6.1318 19 6 4.9408 1.5254 -6.7495 20 6 4.0253 0.5678 -6.3659 21 6 3.1118 0.8481 -5.3475 22 6 2.1323 -0.1747 -4.9271 23 8 1.2733 0.1045 -4.1150 24 8 2.1918 -1.4171 -5.4445 25 6 1.1977 -2.3707 -4.9853 26 1 -0.3633 -1.0275 -0.0207 27 1 -0.3634 0.5317 -0.8794 28 1 -0.3633 0.4958 0.9002 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 2.5567 0.3881 3.5756 32 1 0.7197 1.8381 -1.5293 33 1 3.5933 2.2022 -2.0637 34 1 2.6979 0.7117 -2.4440 35 1 1.1624 2.0053 -3.8990 36 1 2.0578 3.4959 -3.5188 37 1 4.0589 4.0188 -4.6488 38 1 5.6705 3.5100 -6.4360 39 1 5.6509 1.3084 -7.5337 40 1 4.0177 -0.3980 -6.8491 41 1 0.2010 -2.0007 -5.2258 42 1 1.3587 -3.3293 -5.4786 43 1 1.2876 -2.4981 -3.9064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = -62.324661 kcal Electronic energy + Delta-G solvation = -23669.910697 eV Core-core repulsion = 20294.052136 eV Total energy + Delta-G solvation = -3375.858561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72730 -38.92438 -36.76275 -36.22463 -33.70361 -31.85878 -31.60239 -30.33656 -28.09212 -27.45036 -25.72102 -24.00778 -23.18499 -22.48700 -21.39800 -20.49483 -19.14759 -17.92824 -16.93717 -16.37845 -16.06850 -15.77852 -15.41130 -14.77822 -14.59772 -14.51011 -13.80747 -13.57280 -13.44086 -13.24769 -12.94064 -12.63041 -12.35722 -12.28957 -12.14930 -11.84692 -11.62441 -11.39187 -11.03665 -10.99181 -10.81651 -10.72866 -10.61047 -10.41528 -9.96700 -9.72345 -9.68219 -9.41755 -9.14537 -8.92829 -8.72939 -8.25591 -7.03837 -5.88734 -3.89984 0.64692 1.24762 2.55684 2.67843 3.39465 3.43187 3.46822 3.68109 4.50838 4.60097 4.71563 4.79075 4.88060 5.06860 5.16973 5.21076 5.29343 5.42541 5.47748 5.53342 5.71408 5.75086 5.83641 5.98640 6.13629 6.22696 6.26046 6.31080 6.39453 6.48024 6.51780 6.66755 6.69734 6.75363 6.84732 7.06794 7.41795 7.42438 7.62197 7.79978 7.82523 7.98972 8.40692 8.70956 8.77547 9.15789 9.73260 11.18374 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.004168 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.386895 B = 6716.342694 C = 7706.518345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.142 4.142 3 C 0.216 3.784 4 H 0.029 0.971 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.683 5.683 14 C 0.079 3.921 15 C -0.097 4.097 16 C -0.002 4.002 17 C -0.130 4.130 18 C -0.082 4.082 19 C -0.146 4.146 20 C -0.063 4.063 21 C -0.129 4.129 22 C 0.500 3.500 23 O -0.480 6.480 24 O -0.361 6.361 25 C 0.037 3.963 26 H 0.019 0.981 27 H 0.031 0.969 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.009 0.991 31 H 0.258 0.742 32 H 0.328 0.672 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 -2.224 -20.250 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.181 4.181 3 C 0.108 3.892 4 H 0.047 0.953 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.051 4.051 15 C -0.134 4.134 16 C -0.003 4.003 17 C -0.148 4.148 18 C -0.100 4.100 19 C -0.164 4.164 20 C -0.081 4.081 21 C -0.130 4.130 22 C 0.345 3.655 23 O -0.368 6.368 24 O -0.278 6.278 25 C -0.056 4.056 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.091 -1.680 -19.661 19.974 hybrid contribution -0.622 -0.726 0.707 1.189 sum 2.469 -2.406 -18.955 19.266 Atomic orbital electron populations 1.21536 0.97737 0.97829 1.01128 1.22050 0.94987 1.01226 0.99871 1.19153 0.95729 0.88615 0.85658 0.95286 1.21052 1.30342 1.11383 0.89754 0.92143 1.24912 0.95630 0.95192 0.98668 1.69883 1.39228 1.24066 1.20578 0.86642 0.79549 0.79986 0.81668 1.20430 1.21579 1.20385 1.60881 1.04383 1.62823 1.03288 1.21662 0.96666 0.96949 0.89820 1.21024 0.98350 1.01797 0.92248 1.20183 0.94891 0.91027 0.94228 1.21128 0.95575 0.99936 0.98181 1.21430 0.97283 0.96660 0.94662 1.21088 0.99887 0.93878 1.01528 1.21412 0.92761 0.99473 0.94439 1.18977 0.99142 0.93343 1.01534 1.21241 0.83726 0.81729 0.78803 1.90867 1.35721 1.79569 1.30636 1.86504 1.54576 1.21636 1.65086 1.23261 0.90757 0.90464 1.01149 0.96175 0.94991 0.91749 0.89249 0.97226 0.93193 0.85329 0.92662 0.96175 0.88357 0.90656 0.84805 0.85472 0.85430 0.84761 0.91866 0.88242 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 9.39 37.16 0.35 -2.52 16 2 C -0.14 -3.56 5.50 -26.73 -0.15 -3.70 16 3 C 0.22 5.66 2.33 -68.87 -0.16 5.50 16 4 H 0.03 0.84 7.87 -51.93 -0.41 0.43 16 5 C -0.49 -13.65 7.37 -34.44 -0.25 -13.91 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.58 5.26 -17.82 -0.09 1.49 16 8 N -0.90 -26.09 11.38 55.43 0.63 -25.46 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.68 -15.53 6.25 -107.96 -0.67 -16.20 16 14 C 0.08 1.57 5.01 -3.83 -0.02 1.55 16 15 C -0.10 -1.58 4.84 -27.88 -0.14 -1.71 16 16 C 0.00 -0.03 5.17 -104.21 -0.54 -0.57 16 17 C -0.13 -1.51 9.66 -39.64 -0.38 -1.89 16 18 C -0.08 -0.78 10.04 -39.48 -0.40 -1.18 16 19 C -0.15 -1.35 10.03 -39.64 -0.40 -1.75 16 20 C -0.06 -0.68 9.62 -39.17 -0.38 -1.06 16 21 C -0.13 -1.76 5.87 -104.98 -0.62 -2.38 16 22 C 0.50 7.52 7.50 34.61 0.26 7.78 16 23 O -0.48 -8.43 11.68 -19.24 -0.22 -8.65 16 24 O -0.36 -4.66 9.83 -40.54 -0.40 -5.06 16 25 C 0.04 0.39 10.56 101.05 1.07 1.46 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.69 6.41 -51.93 -0.33 0.35 16 28 H 0.06 1.59 7.08 -51.93 -0.37 1.22 16 29 H 0.09 2.48 6.23 -51.93 -0.32 2.15 16 30 H 0.01 0.22 7.21 -51.93 -0.37 -0.15 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.33 7.37 6.53 -39.29 -0.26 7.11 16 33 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 34 H 0.02 0.43 5.66 -51.93 -0.29 0.13 16 35 H 0.10 1.70 5.83 -51.93 -0.30 1.40 16 36 H 0.07 1.16 8.00 -51.93 -0.42 0.74 16 37 H 0.13 1.37 8.03 -52.49 -0.42 0.95 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.13 1.23 7.63 -52.49 -0.40 0.83 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -31.12 347.54 -8.69 -39.81 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.40 Total: 6.37 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.84 Total: -12.90 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.04 Total: -41.66 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.62 Total: -13.71 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.12 -8.69 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.514 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds