Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47373 * 2 1 4 4 H 1.08994 * 109.47236 * 174.77309 * 3 2 1 5 5 C 1.50698 * 109.46893 * 54.76980 * 3 2 1 6 6 H 1.07999 * 120.00244 * 239.99566 * 5 3 2 7 7 C 1.37878 * 119.99755 * 60.00426 * 5 3 2 8 8 N 1.31514 * 120.00460 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99905 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47002 * 59.99954 * 9 7 5 11 11 H 1.48503 * 109.46891 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47261 * 300.00012 * 9 7 5 13 13 N 1.46902 * 109.47099 * 294.77286 * 3 2 1 14 14 C 1.46900 * 111.00103 * 276.34121 * 13 3 2 15 15 C 1.52998 * 109.47298 * 176.37313 * 14 13 3 16 16 C 1.50700 * 109.47182 * 180.02562 * 15 14 13 17 17 C 1.37967 * 120.07023 * 259.50945 * 16 15 14 18 18 C 1.38351 * 120.14506 * 179.97438 * 17 16 15 19 19 C 1.38391 * 120.30567 * 0.04666 * 18 17 16 20 20 C 1.37926 * 120.14894 * 359.97438 * 19 18 17 21 21 C 1.39603 * 120.07763 * 79.23129 * 16 15 14 22 22 C 1.47725 * 120.14751 * 0.02562 * 21 16 15 23 23 O 1.21465 * 120.00487 * 5.35607 * 22 21 16 24 24 O 1.34718 * 119.99604 * 185.36057 * 22 21 16 25 25 C 1.45200 * 116.99851 * 179.97438 * 24 22 21 26 26 H 1.09002 * 109.47124 * 178.84427 * 1 2 3 27 27 H 1.09002 * 109.47206 * 58.84359 * 1 2 3 28 28 H 1.09002 * 109.46858 * 298.84764 * 1 2 3 29 29 H 1.09001 * 109.47138 * 120.00570 * 2 1 3 30 30 H 1.09004 * 109.46819 * 239.99882 * 2 1 3 31 31 H 0.96992 * 120.00437 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99849 * 40.29534 * 13 3 2 33 33 H 1.09002 * 109.46653 * 296.37000 * 14 13 3 34 34 H 1.08996 * 109.47243 * 56.36896 * 14 13 3 35 35 H 1.09001 * 109.46613 * 299.99829 * 15 14 13 36 36 H 1.08996 * 109.47314 * 59.99626 * 15 14 13 37 37 H 1.07994 * 119.93210 * 0.02562 * 17 16 15 38 38 H 1.07999 * 119.84487 * 180.02562 * 18 17 16 39 39 H 1.07994 * 119.92639 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.07540 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47186 * 59.99926 * 25 24 22 42 42 H 1.09000 * 109.47143 * 180.02562 * 25 24 22 43 43 H 1.09009 * 109.46915 * 299.99666 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1260 1.4439 0.0936 5 6 1.4348 2.1892 1.1606 6 1 0.8259 3.0632 0.9819 7 6 1.6585 1.7568 2.4506 8 7 2.3996 0.6925 2.6682 9 14 0.9088 2.6829 3.8892 10 1 -0.5708 2.6815 3.7619 11 1 1.2963 2.0202 5.1604 12 1 1.4043 4.0828 3.8891 13 7 1.6562 2.0976 -1.2576 14 6 2.6178 1.7922 -2.3252 15 6 2.1379 2.4154 -3.6375 16 6 3.1241 2.1016 -4.7329 17 6 4.0450 3.0504 -5.1267 18 6 4.9515 2.7638 -6.1318 19 6 4.9408 1.5254 -6.7495 20 6 4.0253 0.5678 -6.3659 21 6 3.1118 0.8481 -5.3475 22 6 2.1323 -0.1747 -4.9271 23 8 1.2733 0.1045 -4.1150 24 8 2.1918 -1.4171 -5.4445 25 6 1.1977 -2.3707 -4.9853 26 1 -0.3633 -1.0275 -0.0207 27 1 -0.3634 0.5317 -0.8794 28 1 -0.3633 0.4958 0.9002 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 2.5567 0.3881 3.5756 32 1 0.7197 1.8381 -1.5293 33 1 3.5933 2.2022 -2.0637 34 1 2.6979 0.7117 -2.4440 35 1 1.1624 2.0053 -3.8990 36 1 2.0578 3.4959 -3.5188 37 1 4.0589 4.0188 -4.6488 38 1 5.6705 3.5100 -6.4360 39 1 5.6509 1.3084 -7.5337 40 1 4.0177 -0.3980 -6.8491 41 1 0.2010 -2.0007 -5.2258 42 1 1.3587 -3.3293 -5.4786 43 1 1.2876 -2.4981 -3.9064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = -80.452893 kcal Electronic energy + Delta-G solvation = -23670.696796 eV Core-core repulsion = 20294.052136 eV Total energy + Delta-G solvation = -3376.644660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.78395 -39.87697 -38.45652 -37.51323 -35.27164 -33.64669 -32.49441 -32.00857 -29.43827 -28.60861 -27.54133 -25.26246 -24.92667 -23.79870 -22.54766 -21.56772 -21.18653 -18.91743 -18.17936 -17.94090 -17.44254 -16.90617 -16.68343 -16.55559 -15.99963 -15.61249 -15.38766 -15.01395 -14.60121 -14.54971 -14.30097 -14.21216 -13.92012 -13.67831 -13.39823 -13.09591 -12.93792 -12.73720 -12.69361 -12.48933 -12.46272 -12.40872 -12.04126 -11.87070 -11.79202 -11.60710 -11.42164 -11.05511 -10.95803 -10.44232 -10.00981 -9.73367 -8.94534 -8.05577 -6.15004 -0.28798 0.38570 1.43610 1.45391 1.52965 1.53151 1.71040 2.45758 2.78418 3.22611 3.55097 3.68020 3.91618 4.00971 4.19991 4.25122 4.29311 4.30308 4.38567 4.47636 4.48315 4.51368 4.57308 4.64057 4.68746 4.71874 4.86631 5.00842 5.04550 5.09852 5.11539 5.31363 5.34264 5.38619 5.40743 5.49193 5.62054 5.63873 5.69938 5.82404 5.93858 6.29688 6.66731 6.72222 6.83270 6.97410 7.52732 9.00314 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.004168 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.386895 B = 6716.342694 C = 7706.518345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.131 4.131 3 C 0.222 3.778 4 H -0.009 1.009 5 C -0.502 4.502 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.088 3.912 15 C -0.082 4.082 16 C -0.029 4.029 17 C -0.138 4.138 18 C -0.073 4.073 19 C -0.135 4.135 20 C -0.063 4.063 21 C -0.152 4.152 22 C 0.496 3.504 23 O -0.517 6.517 24 O -0.358 6.358 25 C 0.032 3.968 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.331 0.669 33 H 0.045 0.955 34 H 0.003 0.997 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.064 0.936 42 H 0.137 0.863 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -1.769 -22.128 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.171 4.171 3 C 0.114 3.886 4 H 0.009 0.991 5 C -0.541 4.541 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.042 4.042 15 C -0.119 4.119 16 C -0.030 4.030 17 C -0.155 4.155 18 C -0.091 4.091 19 C -0.152 4.152 20 C -0.081 4.081 21 C -0.153 4.153 22 C 0.342 3.658 23 O -0.408 6.408 24 O -0.275 6.275 25 C -0.061 4.061 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.161 0.839 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.169 0.831 41 H 0.083 0.917 42 H 0.155 0.845 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.766 -1.231 -21.569 21.930 hybrid contribution -0.736 -0.912 1.183 1.665 sum 3.030 -2.144 -20.386 20.721 Atomic orbital electron populations 1.21396 0.95864 0.99156 1.00651 1.21875 0.96531 1.00212 0.98502 1.18925 0.93272 0.89434 0.87017 0.99083 1.21239 1.30598 1.11462 0.90791 0.92804 1.25653 0.95868 0.95909 1.01121 1.70021 1.39999 1.25186 1.21104 0.85636 0.78992 0.78734 0.78398 1.19613 1.21082 1.19920 1.60801 1.05057 1.62338 1.03133 1.21595 0.95592 0.96148 0.90831 1.20754 0.98576 1.01395 0.91171 1.20062 0.95866 0.92329 0.94695 1.21336 0.95442 0.99831 0.98939 1.21855 0.96619 0.97551 0.93048 1.21558 0.99251 0.92993 1.01422 1.21676 0.92184 1.00769 0.93453 1.19105 1.00132 0.92963 1.03102 1.21681 0.83482 0.82446 0.78188 1.90836 1.37298 1.80258 1.32387 1.86499 1.55093 1.21193 1.64707 1.23505 0.90520 0.91488 1.00584 0.94018 0.93880 0.93552 0.91941 0.97067 0.93156 0.85093 0.93669 0.97863 0.89646 0.90162 0.83898 0.81961 0.81716 0.83110 0.91745 0.84459 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.25 9.39 71.98 0.68 -4.58 16 2 C -0.13 -6.82 5.50 30.59 0.17 -6.65 16 3 C 0.22 12.08 2.33 44.17 0.10 12.19 16 4 H -0.01 -0.54 7.87 -2.39 -0.02 -0.55 16 5 C -0.50 -28.82 7.37 25.60 0.19 -28.63 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.71 5.26 84.65 0.45 1.16 16 8 N -0.92 -54.75 11.38 21.45 0.24 -54.51 16 9 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.68 -32.17 6.25 -495.46 -3.10 -35.26 16 14 C 0.09 3.65 5.01 86.30 0.43 4.08 16 15 C -0.08 -2.74 4.84 29.85 0.14 -2.59 16 16 C -0.03 -0.80 5.17 -19.60 -0.10 -0.90 16 17 C -0.14 -2.97 9.66 22.23 0.21 -2.75 16 18 C -0.07 -1.12 10.04 22.33 0.22 -0.90 16 19 C -0.13 -1.96 10.03 22.23 0.22 -1.74 16 20 C -0.06 -1.23 9.62 22.54 0.22 -1.01 16 21 C -0.15 -4.11 5.87 -20.10 -0.12 -4.22 16 22 C 0.50 15.20 7.50 70.33 0.53 15.73 16 23 O -0.52 -18.95 11.68 19.95 0.23 -18.72 16 24 O -0.36 -9.15 9.83 -56.28 -0.55 -9.70 16 25 C 0.03 0.66 10.56 113.37 1.20 1.86 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.87 6.41 -2.39 -0.02 1.86 16 28 H 0.05 2.30 7.08 -2.39 -0.02 2.28 16 29 H 0.06 3.58 6.23 -2.39 -0.01 3.57 16 30 H 0.01 0.54 7.21 -2.38 -0.02 0.53 16 31 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.33 15.26 6.53 -89.69 -0.59 14.68 16 33 H 0.04 1.92 8.13 -2.39 -0.02 1.90 16 34 H 0.00 0.14 5.66 -2.39 -0.01 0.13 16 35 H 0.09 3.08 5.83 -2.39 -0.01 3.07 16 36 H 0.08 2.52 8.00 -2.39 -0.02 2.50 16 37 H 0.14 2.72 8.03 -2.91 -0.02 2.69 16 38 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 40 H 0.15 2.36 7.63 -2.91 -0.02 2.34 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -69.56 347.54 3.82 -65.74 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.42 Total: 24.29 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 4.54 Total: -18.96 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -2.85 Total: -89.77 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.32 Total: -28.42 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.56 3.82 -65.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.710 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds