Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47062 * 2 1 4 4 H 1.08998 * 109.47168 * 185.67762 * 3 2 1 5 5 C 1.50702 * 109.47251 * 305.67135 * 3 2 1 6 6 H 1.08002 * 120.00294 * 119.99993 * 5 3 2 7 7 C 1.37874 * 120.00059 * 300.00303 * 5 3 2 8 8 N 1.31512 * 120.00102 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99822 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47068 * 90.00037 * 9 7 5 11 11 H 1.48502 * 109.46906 * 209.99830 * 9 7 5 12 12 H 1.48500 * 109.46971 * 329.99972 * 9 7 5 13 13 N 1.46903 * 109.47400 * 65.66941 * 3 2 1 14 14 C 1.46902 * 110.99579 * 87.41967 * 13 3 2 15 15 C 1.53000 * 109.47168 * 184.63139 * 14 13 3 16 16 C 1.50698 * 109.47292 * 179.97438 * 15 14 13 17 17 C 1.37967 * 120.07326 * 99.06216 * 16 15 14 18 18 C 1.38345 * 120.15000 * 180.29513 * 17 16 15 19 19 C 1.38382 * 120.30274 * 359.45006 * 18 17 16 20 20 C 1.37931 * 120.15145 * 0.54951 * 19 18 17 21 21 C 1.39596 * 120.08079 * 279.08387 * 16 15 14 22 22 C 1.47726 * 120.15122 * 359.95834 * 21 16 15 23 23 O 1.21473 * 119.99613 * 5.40401 * 22 21 16 24 24 O 1.34712 * 120.00462 * 185.40832 * 22 21 16 25 25 C 1.45199 * 117.00047 * 179.97438 * 24 22 21 26 26 H 1.09005 * 109.47222 * 63.50464 * 1 2 3 27 27 H 1.09002 * 109.47115 * 183.50687 * 1 2 3 28 28 H 1.09002 * 109.47211 * 303.50427 * 1 2 3 29 29 H 1.08996 * 109.47171 * 239.99760 * 2 1 3 30 30 H 1.08998 * 109.46836 * 119.99526 * 2 1 3 31 31 H 0.97003 * 119.99827 * 179.97438 * 8 7 5 32 32 H 1.00896 * 111.00339 * 323.46907 * 13 3 2 33 33 H 1.09000 * 109.47109 * 64.63174 * 14 13 3 34 34 H 1.09000 * 109.47117 * 304.63358 * 14 13 3 35 35 H 1.09000 * 109.47077 * 60.00015 * 15 14 13 36 36 H 1.09000 * 109.47281 * 300.00118 * 15 14 13 37 37 H 1.08010 * 119.92627 * 0.02617 * 17 16 15 38 38 H 1.08001 * 119.84655 * 179.72650 * 18 17 16 39 39 H 1.08000 * 119.92758 * 180.29283 * 19 18 17 40 40 H 1.07995 * 120.07923 * 179.74174 * 20 19 18 41 41 H 1.08998 * 109.47104 * 299.99913 * 25 24 22 42 42 H 1.09007 * 109.47524 * 59.99658 * 25 24 22 43 43 H 1.08997 * 109.47351 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1252 1.4441 -0.1017 5 6 1.4263 2.1923 -1.1542 6 1 0.8186 3.0657 -0.9689 7 6 1.6404 1.7632 -2.4469 8 7 1.1045 2.4173 -3.4541 9 14 2.6919 0.2529 -2.7676 10 1 1.8314 -0.9574 -2.7724 11 1 3.3635 0.3880 -4.0851 12 1 3.7166 0.1275 -1.7001 13 7 1.6652 2.0944 1.2620 14 6 2.6806 1.8598 2.2974 15 6 2.2027 2.4534 3.6241 16 6 3.2440 2.2122 4.6864 17 6 4.1290 3.2142 5.0271 18 6 5.0895 2.9925 5.9978 19 6 5.1625 1.7697 6.6415 20 6 4.2839 0.7592 6.3107 21 6 3.3156 0.9743 5.3277 22 6 2.3710 -0.1032 4.9685 23 8 1.5947 0.0519 4.0472 24 8 2.3705 -1.2577 5.6626 25 6 1.4149 -2.2719 5.2544 26 1 -0.3634 0.4585 -0.9198 27 1 -0.3633 -1.0258 0.0629 28 1 -0.3634 0.5673 0.8569 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.2555 2.1156 -4.3636 32 1 0.7554 1.7870 1.5716 33 1 3.6163 2.3349 2.0029 34 1 2.8386 0.7877 2.4149 35 1 1.2669 1.9783 3.9186 36 1 2.0446 3.5254 3.5065 37 1 4.0747 4.1725 4.5318 38 1 5.7827 3.7789 6.2576 39 1 5.9117 1.6048 7.4017 40 1 4.3446 -0.1961 6.8109 41 1 0.4036 -1.8754 5.3447 42 1 1.6037 -2.5531 4.2183 43 1 1.5203 -3.1486 5.8935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -53.459677 kcal Electronic energy + Delta-G solvation = -23729.436287 eV Core-core repulsion = 20353.962141 eV Total energy + Delta-G solvation = -3375.474146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81633 -39.00781 -36.98401 -36.40214 -33.81873 -31.94669 -31.67727 -30.79691 -28.22881 -27.61034 -26.11054 -24.07440 -23.07221 -22.69318 -21.52272 -20.53636 -19.40284 -18.01242 -17.03574 -16.49694 -16.28592 -15.91776 -15.53349 -14.96979 -14.76442 -14.70610 -13.88186 -13.72712 -13.51599 -13.29844 -13.08644 -12.84002 -12.69869 -12.36894 -12.29992 -12.16229 -11.84062 -11.58561 -11.21522 -11.10844 -10.88480 -10.82832 -10.59006 -10.35225 -10.31021 -9.96333 -9.76550 -9.28960 -9.21340 -9.04469 -8.83703 -8.44589 -7.22095 -5.95882 -3.90381 0.57286 1.17677 2.47818 2.57881 3.32315 3.42097 3.43604 3.60258 4.48891 4.52384 4.62067 4.72024 4.80493 4.97535 5.06897 5.13888 5.20926 5.35233 5.38042 5.40116 5.59272 5.64530 5.73839 5.86628 6.05190 6.06419 6.10494 6.13505 6.18754 6.24167 6.29192 6.31381 6.54913 6.65469 6.71389 6.73624 6.95201 6.96140 7.12380 7.35259 7.70920 7.85179 8.06799 8.52724 8.82146 9.16293 9.68318 11.17776 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.004501 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.094837 B = 6218.819966 C = 7076.061371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.155 4.155 3 C 0.186 3.814 4 H 0.029 0.971 5 C -0.485 4.485 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.904 5.904 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.271 1.271 13 N -0.670 5.670 14 C 0.075 3.925 15 C -0.091 4.091 16 C -0.004 4.004 17 C -0.129 4.129 18 C -0.082 4.082 19 C -0.145 4.145 20 C -0.063 4.063 21 C -0.129 4.129 22 C 0.498 3.502 23 O -0.480 6.480 24 O -0.361 6.361 25 C 0.038 3.962 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.333 0.667 33 H 0.057 0.943 34 H 0.026 0.974 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -5.344 22.958 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.194 4.194 3 C 0.077 3.923 4 H 0.047 0.953 5 C -0.524 4.524 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.543 5.543 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.197 1.197 13 N -0.301 5.301 14 C -0.054 4.054 15 C -0.129 4.129 16 C -0.005 4.005 17 C -0.147 4.147 18 C -0.100 4.100 19 C -0.163 4.163 20 C -0.081 4.081 21 C -0.130 4.130 22 C 0.343 3.657 23 O -0.368 6.368 24 O -0.278 6.278 25 C -0.056 4.056 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.011 -4.706 22.286 23.557 hybrid contribution 0.378 -2.081 -0.162 2.121 sum 6.389 -6.787 22.124 24.008 Atomic orbital electron populations 1.21564 0.95789 0.98554 1.02876 1.22438 0.97274 1.01041 0.98627 1.19654 0.95723 0.88312 0.88621 0.95345 1.20939 1.30721 1.12544 0.88163 0.90064 1.24878 0.95600 0.96545 0.96226 1.69886 1.45229 1.40334 0.98848 0.86981 0.81231 0.84059 0.76654 1.20714 1.22551 1.19667 1.60719 1.04099 1.62324 1.02929 1.21749 0.96167 0.97664 0.89866 1.20918 0.97088 1.02279 0.92571 1.20157 0.95254 0.91105 0.93990 1.21141 0.95451 0.99565 0.98547 1.21440 0.96949 0.97046 0.94530 1.21103 1.00195 0.93570 1.01431 1.21414 0.92842 0.99428 0.94418 1.18973 0.99019 0.92979 1.02041 1.21253 0.82563 0.81833 0.80064 1.90893 1.38730 1.79522 1.27630 1.86507 1.57864 1.25473 1.57945 1.23257 0.91712 0.89017 1.01635 0.90769 0.95495 0.93589 0.93725 0.94832 0.92870 0.84831 0.92459 0.95633 0.88951 0.90422 0.84698 0.85399 0.85390 0.84754 0.91757 0.91701 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.38 37.16 0.35 -2.48 16 2 C -0.15 -3.58 5.22 -26.74 -0.14 -3.72 16 3 C 0.19 4.62 1.93 -68.87 -0.13 4.48 16 4 H 0.03 0.75 6.87 -51.93 -0.36 0.39 16 5 C -0.49 -13.91 7.98 -34.44 -0.27 -14.19 16 6 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 7 C 0.07 2.00 5.38 -17.82 -0.10 1.90 16 8 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.88 22.69 24.32 -169.99 -4.13 18.55 16 10 H -0.28 -7.06 6.92 56.52 0.39 -6.67 16 11 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 12 H -0.27 -6.81 6.53 56.52 0.37 -6.44 16 13 N -0.67 -14.60 6.27 -107.95 -0.68 -15.28 16 14 C 0.08 1.41 4.97 -3.82 -0.02 1.39 16 15 C -0.09 -1.40 4.82 -27.88 -0.13 -1.54 16 16 C 0.00 -0.05 5.17 -104.22 -0.54 -0.59 16 17 C -0.13 -1.41 9.66 -39.64 -0.38 -1.80 16 18 C -0.08 -0.73 10.04 -39.49 -0.40 -1.12 16 19 C -0.14 -1.25 10.03 -39.64 -0.40 -1.65 16 20 C -0.06 -0.64 9.62 -39.17 -0.38 -1.02 16 21 C -0.13 -1.66 5.87 -104.99 -0.62 -2.27 16 22 C 0.50 6.99 7.74 34.61 0.27 7.25 16 23 O -0.48 -7.93 11.33 -19.25 -0.22 -8.15 16 24 O -0.36 -4.29 9.83 -40.52 -0.40 -4.69 16 25 C 0.04 0.35 10.56 101.05 1.07 1.42 16 26 H 0.07 1.79 7.14 -51.93 -0.37 1.42 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.93 6.34 -51.93 -0.33 0.60 16 29 H 0.04 1.08 3.44 -51.93 -0.18 0.90 16 30 H 0.03 0.73 7.47 -51.93 -0.39 0.34 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.33 7.07 6.46 -39.29 -0.25 6.82 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.03 0.50 5.78 -51.93 -0.30 0.20 16 35 H 0.09 1.50 6.02 -51.93 -0.31 1.18 16 36 H 0.08 1.14 8.02 -51.93 -0.42 0.72 16 37 H 0.14 1.31 8.04 -52.48 -0.42 0.89 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.14 7.62 -52.49 -0.40 0.74 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -32.66 341.01 -7.62 -40.29 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.29 Total: 5.37 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.82 Total: -13.93 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.10 Total: -42.59 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.62 Total: -12.84 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.13 Total: 18.55 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.66 -7.62 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.171 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds