Wall clock time and date at job start Tue Mar 31 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47062 * 2 1 4 4 H 1.08998 * 109.47168 * 185.67762 * 3 2 1 5 5 C 1.50702 * 109.47251 * 305.67135 * 3 2 1 6 6 H 1.08002 * 120.00294 * 119.99993 * 5 3 2 7 7 C 1.37874 * 120.00059 * 300.00303 * 5 3 2 8 8 N 1.31512 * 120.00102 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99822 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47068 * 90.00037 * 9 7 5 11 11 H 1.48502 * 109.46906 * 209.99830 * 9 7 5 12 12 H 1.48500 * 109.46971 * 329.99972 * 9 7 5 13 13 N 1.46903 * 109.47400 * 65.66941 * 3 2 1 14 14 C 1.46902 * 110.99579 * 87.41967 * 13 3 2 15 15 C 1.53000 * 109.47168 * 184.63139 * 14 13 3 16 16 C 1.50698 * 109.47292 * 179.97438 * 15 14 13 17 17 C 1.37967 * 120.07326 * 99.06216 * 16 15 14 18 18 C 1.38345 * 120.15000 * 180.29513 * 17 16 15 19 19 C 1.38382 * 120.30274 * 359.45006 * 18 17 16 20 20 C 1.37931 * 120.15145 * 0.54951 * 19 18 17 21 21 C 1.39596 * 120.08079 * 279.08387 * 16 15 14 22 22 C 1.47726 * 120.15122 * 359.95834 * 21 16 15 23 23 O 1.21473 * 119.99613 * 5.40401 * 22 21 16 24 24 O 1.34712 * 120.00462 * 185.40832 * 22 21 16 25 25 C 1.45199 * 117.00047 * 179.97438 * 24 22 21 26 26 H 1.09005 * 109.47222 * 63.50464 * 1 2 3 27 27 H 1.09002 * 109.47115 * 183.50687 * 1 2 3 28 28 H 1.09002 * 109.47211 * 303.50427 * 1 2 3 29 29 H 1.08996 * 109.47171 * 239.99760 * 2 1 3 30 30 H 1.08998 * 109.46836 * 119.99526 * 2 1 3 31 31 H 0.97003 * 119.99827 * 179.97438 * 8 7 5 32 32 H 1.00896 * 111.00339 * 323.46907 * 13 3 2 33 33 H 1.09000 * 109.47109 * 64.63174 * 14 13 3 34 34 H 1.09000 * 109.47117 * 304.63358 * 14 13 3 35 35 H 1.09000 * 109.47077 * 60.00015 * 15 14 13 36 36 H 1.09000 * 109.47281 * 300.00118 * 15 14 13 37 37 H 1.08010 * 119.92627 * 0.02617 * 17 16 15 38 38 H 1.08001 * 119.84655 * 179.72650 * 18 17 16 39 39 H 1.08000 * 119.92758 * 180.29283 * 19 18 17 40 40 H 1.07995 * 120.07923 * 179.74174 * 20 19 18 41 41 H 1.08998 * 109.47104 * 299.99913 * 25 24 22 42 42 H 1.09007 * 109.47524 * 59.99658 * 25 24 22 43 43 H 1.08997 * 109.47351 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1252 1.4441 -0.1017 5 6 1.4263 2.1923 -1.1542 6 1 0.8186 3.0657 -0.9689 7 6 1.6404 1.7632 -2.4469 8 7 1.1045 2.4173 -3.4541 9 14 2.6919 0.2529 -2.7676 10 1 1.8314 -0.9574 -2.7724 11 1 3.3635 0.3880 -4.0851 12 1 3.7166 0.1275 -1.7001 13 7 1.6652 2.0944 1.2620 14 6 2.6806 1.8598 2.2974 15 6 2.2027 2.4534 3.6241 16 6 3.2440 2.2122 4.6864 17 6 4.1290 3.2142 5.0271 18 6 5.0895 2.9925 5.9978 19 6 5.1625 1.7697 6.6415 20 6 4.2839 0.7592 6.3107 21 6 3.3156 0.9743 5.3277 22 6 2.3710 -0.1032 4.9685 23 8 1.5947 0.0519 4.0472 24 8 2.3705 -1.2577 5.6626 25 6 1.4149 -2.2719 5.2544 26 1 -0.3634 0.4585 -0.9198 27 1 -0.3633 -1.0258 0.0629 28 1 -0.3634 0.5673 0.8569 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.2555 2.1156 -4.3636 32 1 0.7554 1.7870 1.5716 33 1 3.6163 2.3349 2.0029 34 1 2.8386 0.7877 2.4149 35 1 1.2669 1.9783 3.9186 36 1 2.0446 3.5254 3.5065 37 1 4.0747 4.1725 4.5318 38 1 5.7827 3.7789 6.2576 39 1 5.9117 1.6048 7.4017 40 1 4.3446 -0.1961 6.8109 41 1 0.4036 -1.8754 5.3447 42 1 1.6037 -2.5531 4.2183 43 1 1.5203 -3.1486 5.8935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:00 Heat of formation + Delta-G solvation = -74.561957 kcal Electronic energy + Delta-G solvation = -23730.351351 eV Core-core repulsion = 20353.962141 eV Total energy + Delta-G solvation = -3376.389210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.78239 -39.88535 -38.65661 -37.52104 -35.28099 -33.91662 -32.50491 -32.27516 -29.57199 -28.67293 -27.79080 -25.09846 -24.94148 -23.88925 -22.56579 -21.55747 -21.33517 -18.91463 -18.48109 -17.98106 -17.43142 -17.09651 -16.80274 -16.60840 -16.08186 -15.66467 -15.36055 -15.10998 -14.81269 -14.65204 -14.46376 -14.23640 -14.18342 -13.80925 -13.53417 -13.15720 -13.03443 -12.74762 -12.68186 -12.66160 -12.46029 -12.26139 -12.12406 -11.93015 -11.77838 -11.65744 -11.27549 -11.17115 -11.06083 -10.69175 -10.01151 -9.74318 -9.00515 -8.25130 -6.24090 -0.28727 0.38076 1.26530 1.31082 1.40410 1.53915 1.70593 2.31699 2.77490 3.08918 3.44749 3.68250 3.91257 3.96462 4.14397 4.20132 4.24816 4.28962 4.30702 4.31752 4.35589 4.47471 4.48248 4.53212 4.64609 4.70523 4.80790 4.88479 5.00539 5.02250 5.10212 5.11486 5.12991 5.22050 5.33446 5.38650 5.49252 5.50367 5.61088 5.71377 5.93128 6.06642 6.69694 6.71854 6.77114 6.80466 7.38870 8.92233 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.004501 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.094837 B = 6218.819966 C = 7076.061371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.150 4.150 3 C 0.191 3.809 4 H 0.017 0.983 5 C -0.485 4.485 6 H 0.038 0.962 7 C 0.018 3.982 8 N -0.948 5.948 9 Si 0.938 3.062 10 H -0.267 1.267 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.678 5.678 14 C 0.084 3.916 15 C -0.078 4.078 16 C -0.028 4.028 17 C -0.137 4.137 18 C -0.074 4.074 19 C -0.135 4.135 20 C -0.063 4.063 21 C -0.150 4.150 22 C 0.495 3.505 23 O -0.516 6.516 24 O -0.358 6.358 25 C 0.032 3.968 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.335 0.665 33 H 0.051 0.949 34 H 0.018 0.982 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.151 0.849 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.119 -6.810 25.663 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.189 4.189 3 C 0.081 3.919 4 H 0.035 0.965 5 C -0.523 4.523 6 H 0.057 0.943 7 C -0.179 4.179 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.223 1.223 12 H -0.184 1.184 13 N -0.309 5.309 14 C -0.046 4.046 15 C -0.115 4.115 16 C -0.029 4.029 17 C -0.155 4.155 18 C -0.091 4.091 19 C -0.152 4.152 20 C -0.081 4.081 21 C -0.151 4.151 22 C 0.341 3.659 23 O -0.406 6.406 24 O -0.275 6.275 25 C -0.061 4.061 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.160 0.840 38 H 0.179 0.821 39 H 0.182 0.818 40 H 0.169 0.831 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.101 -6.183 25.033 27.028 hybrid contribution -0.263 -1.559 -0.879 1.808 sum 7.838 -7.742 24.154 26.548 Atomic orbital electron populations 1.21476 0.94837 1.00206 1.01609 1.22337 0.98111 0.99486 0.98977 1.19429 0.94526 0.89240 0.88672 0.96475 1.21076 1.29879 1.11466 0.89909 0.94347 1.25600 0.96874 0.99544 0.95886 1.70025 1.47107 1.42382 0.99414 0.86011 0.79921 0.80685 0.76729 1.19295 1.22293 1.18429 1.60603 1.05080 1.62242 1.03004 1.21705 0.94970 0.97353 0.90559 1.20670 0.97551 1.01653 0.91666 1.20023 0.95933 0.92440 0.94525 1.21329 0.95564 0.99335 0.99308 1.21840 0.96228 0.98075 0.92994 1.21553 0.99805 0.92649 1.01227 1.21674 0.92150 1.00739 0.93502 1.19089 1.00020 0.92522 1.03457 1.21624 0.82204 0.82451 0.79571 1.90864 1.40259 1.80251 1.29251 1.86503 1.58282 1.25215 1.57461 1.23509 0.91176 0.89473 1.01975 0.93782 0.92616 0.92827 0.94428 0.93155 0.92683 0.84596 0.93092 0.96421 0.90152 0.90385 0.84026 0.82135 0.81844 0.83097 0.92013 0.92775 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 9.38 71.98 0.68 -4.63 16 2 C -0.15 -6.83 5.22 30.59 0.16 -6.67 16 3 C 0.19 9.59 1.93 44.17 0.09 9.67 16 4 H 0.02 0.91 6.87 -2.39 -0.02 0.89 16 5 C -0.48 -28.71 7.98 25.60 0.20 -28.50 16 6 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 7 C 0.02 1.06 5.38 84.65 0.46 1.52 16 8 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 9 Si 0.94 46.89 24.32 68.60 1.67 48.56 16 10 H -0.27 -12.71 6.92 99.48 0.69 -12.03 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 12 H -0.26 -12.39 6.53 99.48 0.65 -11.74 16 13 N -0.68 -30.23 6.27 -495.45 -3.11 -33.34 16 14 C 0.08 3.16 4.97 86.30 0.43 3.59 16 15 C -0.08 -2.43 4.82 29.85 0.14 -2.29 16 16 C -0.03 -0.73 5.17 -19.60 -0.10 -0.83 16 17 C -0.14 -2.76 9.66 22.23 0.21 -2.54 16 18 C -0.07 -1.04 10.04 22.33 0.22 -0.82 16 19 C -0.13 -1.77 10.03 22.23 0.22 -1.54 16 20 C -0.06 -1.10 9.62 22.54 0.22 -0.88 16 21 C -0.15 -3.68 5.87 -20.10 -0.12 -3.79 16 22 C 0.49 13.67 7.74 70.33 0.54 14.22 16 23 O -0.52 -17.22 11.33 19.92 0.23 -17.00 16 24 O -0.36 -8.06 9.83 -56.22 -0.55 -8.61 16 25 C 0.03 0.56 10.56 113.37 1.20 1.75 16 26 H 0.04 2.14 7.14 -2.38 -0.02 2.12 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 2.18 6.34 -2.39 -0.02 2.16 16 29 H 0.04 1.76 3.44 -2.39 -0.01 1.75 16 30 H 0.05 2.12 7.47 -2.39 -0.02 2.10 16 31 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.33 14.57 6.46 -89.70 -0.58 13.99 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.02 0.70 5.78 -2.39 -0.01 0.69 16 35 H 0.08 2.69 6.02 -2.39 -0.01 2.68 16 36 H 0.08 2.34 8.02 -2.39 -0.02 2.32 16 37 H 0.14 2.54 8.04 -2.91 -0.02 2.52 16 38 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 40 H 0.15 2.08 7.62 -2.91 -0.02 2.06 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -73.02 341.01 3.45 -69.57 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.36 Total: 22.85 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 4.55 Total: -21.75 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -2.81 Total: -93.63 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.33 Total: -25.61 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.67 Total: 48.56 kcal Total: -73.02 3.45 -69.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.989 kcal (2) G-P(sol) polarization free energy of solvation -73.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds