Wall clock time and date at job start Tue Mar 31 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46546 * 2 1 4 4 H 1.09001 * 109.46773 * 56.56389 * 3 2 1 5 5 C 1.50701 * 109.46878 * 176.55683 * 3 2 1 6 6 H 1.08002 * 119.99868 * 119.72419 * 5 3 2 7 7 C 1.37877 * 120.00344 * 300.00500 * 5 3 2 8 8 N 1.31509 * 119.99936 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00073 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47202 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47061 * 119.99766 * 9 7 5 12 12 H 1.48496 * 109.47584 * 239.99894 * 9 7 5 13 13 N 1.46900 * 109.47421 * 296.56241 * 3 2 1 14 14 C 1.46902 * 110.99730 * 295.93717 * 13 3 2 15 15 C 1.46896 * 111.00050 * 171.98292 * 13 3 2 16 16 C 1.50697 * 109.47006 * 195.89887 * 15 13 3 17 17 C 1.38255 * 119.94633 * 269.72426 * 16 15 13 18 18 C 1.38196 * 120.10948 * 179.78044 * 17 16 15 19 19 C 1.38696 * 120.07154 * 0.56136 * 18 17 16 20 20 C 1.38978 * 119.81803 * 359.62610 * 19 18 17 21 21 C 1.38195 * 119.94279 * 90.00561 * 16 15 13 22 22 O 1.36110 * 120.78444 * 180.26327 * 20 19 18 23 23 C 1.43169 * 116.71466 * 342.81615 * 22 20 19 24 24 C 1.53468 * 108.25186 * 46.16085 * 23 22 20 25 25 O 1.36099 * 119.40090 * 179.53839 * 19 18 17 26 26 H 1.08998 * 109.47018 * 55.13298 * 1 2 3 27 27 H 1.08998 * 109.46593 * 175.13265 * 1 2 3 28 28 H 1.09001 * 109.47179 * 295.13183 * 1 2 3 29 29 H 1.08993 * 109.47210 * 240.00377 * 2 1 3 30 30 H 1.09000 * 109.47421 * 119.99873 * 2 1 3 31 31 H 0.96997 * 119.99959 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47234 * 59.99900 * 14 13 3 33 33 H 1.08995 * 109.47095 * 180.02562 * 14 13 3 34 34 H 1.09000 * 109.47206 * 300.00150 * 14 13 3 35 35 H 1.08999 * 109.47229 * 315.90690 * 15 13 3 36 36 H 1.09007 * 109.47266 * 75.89728 * 15 13 3 37 37 H 1.07996 * 119.94113 * 0.03758 * 17 16 15 38 38 H 1.08000 * 119.95971 * 180.29833 * 18 17 16 39 39 H 1.08008 * 119.96582 * 359.94328 * 21 16 15 40 40 H 1.08998 * 109.71170 * 165.84989 * 23 22 20 41 41 H 1.09001 * 109.71055 * 286.47735 * 23 22 20 42 42 H 1.09007 * 109.70952 * 59.94343 * 24 23 22 43 43 H 1.09002 * 109.71563 * 180.57552 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6271 1.9738 0.8576 5 6 3.5445 1.4435 0.0853 6 1 4.1299 1.8913 -0.7042 7 6 4.1740 0.8677 1.1685 8 7 3.4614 0.3180 2.1274 9 14 6.0390 0.8683 1.2738 10 1 6.6022 1.5444 0.0776 11 1 6.4654 1.5928 2.4979 12 1 6.5322 -0.5313 1.3299 13 7 1.6192 2.1107 -1.2388 14 6 2.2358 1.4791 -2.4131 15 6 1.9247 3.5468 -1.1922 16 6 1.1512 4.2601 -2.2711 17 6 1.7075 4.4233 -3.5261 18 6 0.9994 5.0728 -4.5193 19 6 -0.2671 5.5732 -4.2560 20 6 -0.8249 5.4125 -2.9932 21 6 -0.1108 4.7551 -2.0025 22 8 -2.0684 5.8909 -2.7149 23 6 -2.5997 6.8664 -3.6182 24 6 -2.3592 6.3751 -5.0521 25 8 -0.9486 6.2188 -5.2414 26 1 -0.3633 0.5875 -0.8432 27 1 -0.3632 -1.0240 -0.0872 28 1 -0.3633 0.4365 0.9304 29 1 1.8934 -0.5137 -0.8900 30 1 1.8935 -0.5138 0.8900 31 1 3.9043 -0.0868 2.8895 32 1 1.9365 0.4321 -2.4616 33 1 1.9079 1.9934 -3.3164 34 1 3.3209 1.5434 -2.3324 35 1 1.6431 3.9468 -0.2182 36 1 2.9926 3.6965 -1.3514 37 1 2.6956 4.0388 -3.7319 38 1 1.4344 5.1947 -5.5003 39 1 -0.5418 4.6295 -1.0201 40 1 -3.6694 6.9841 -3.4446 41 1 -2.0951 7.8207 -3.4672 42 1 -2.8584 5.4176 -5.2012 43 1 -2.7465 7.1067 -5.7613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:29 Heat of formation + Delta-G solvation = -43.699468 kcal Electronic energy + Delta-G solvation = -23694.682345 eV Core-core repulsion = 20319.631433 eV Total energy + Delta-G solvation = -3375.050912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15836 -38.33476 -37.19991 -36.63841 -33.03363 -31.60164 -30.86820 -30.46694 -28.65449 -26.76343 -26.27241 -24.52521 -23.70169 -22.56129 -21.62022 -20.17356 -18.94559 -18.46763 -17.17662 -17.07588 -16.33445 -15.43868 -15.22842 -15.06224 -14.44067 -14.33451 -14.25127 -14.17961 -13.68281 -13.30431 -13.19025 -12.72393 -12.67182 -12.22967 -11.79832 -11.61885 -11.44975 -11.17650 -11.10969 -10.95059 -10.85193 -10.70596 -10.60873 -10.44800 -10.36604 -9.96403 -9.64573 -9.44502 -9.06112 -8.39276 -8.35906 -7.85437 -7.10079 -5.98129 -4.11633 1.49690 1.52363 3.03554 3.22077 3.25890 3.34864 3.37511 3.89406 4.14296 4.39879 4.65008 4.72163 4.74419 5.06449 5.14066 5.27167 5.28245 5.39285 5.44877 5.61733 5.64722 5.89493 6.21807 6.23870 6.31919 6.36709 6.40190 6.50970 6.53612 6.64312 6.72652 6.82855 6.83440 6.90331 7.01821 7.16240 7.22661 7.37562 7.51274 7.63002 7.78078 7.98858 8.16682 8.31636 8.48329 8.98648 9.56011 11.00956 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025692 B = 0.003776 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.583734 B = 7413.232793 C = 7872.634911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.039 0.961 5 C -0.543 4.543 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.029 3.971 15 C 0.101 3.899 16 C -0.051 4.051 17 C -0.109 4.109 18 C -0.115 4.115 19 C 0.034 3.966 20 C 0.046 3.954 21 C -0.095 4.095 22 O -0.308 6.308 23 C 0.021 3.979 24 C 0.021 3.979 25 O -0.312 6.312 26 H 0.050 0.950 27 H 0.024 0.976 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.260 0.740 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.735 10.762 -11.958 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.582 4.582 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.120 4.120 15 C -0.027 4.027 16 C -0.052 4.052 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.010 4.010 20 C 0.002 3.998 21 C -0.114 4.114 22 O -0.223 6.223 23 C -0.055 4.055 24 C -0.054 4.054 25 O -0.227 6.227 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.135 0.865 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.276 10.630 -11.819 18.928 hybrid contribution 1.721 0.103 0.099 1.727 sum -8.554 10.732 -11.721 18.048 Atomic orbital electron populations 1.21731 0.98882 0.98490 1.00643 1.21593 0.92208 0.99088 1.01960 1.19326 0.92832 0.91164 0.85999 0.94359 1.21787 0.92772 1.37773 1.05897 0.92434 1.24904 0.97842 0.95023 0.95625 1.69883 1.34808 1.37945 1.09688 0.86638 0.86310 0.77701 0.77930 1.19954 1.21047 1.21044 1.62470 1.57900 1.00240 1.04836 1.22281 0.97746 0.99236 0.92722 1.20832 0.96431 0.89936 0.95510 1.19905 0.93642 0.96184 0.95430 1.20891 1.00279 0.99281 0.92363 1.20332 0.92722 1.00006 1.00326 1.18802 0.94496 1.01016 0.86687 1.18878 0.86545 1.01581 0.92828 1.20335 0.93372 0.99386 0.98293 1.86319 1.29031 1.56374 1.50566 1.23556 1.01118 0.91469 0.89311 1.23561 0.80983 1.02987 0.97914 1.86268 1.20277 1.73735 1.42429 0.93053 0.95695 0.94337 0.94851 0.89042 0.92965 0.92248 0.93818 0.94975 0.90607 0.93580 0.85313 0.85340 0.84793 0.86452 0.90801 0.90708 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.85 37.16 0.37 -2.51 16 2 C -0.11 -2.59 5.08 -26.72 -0.14 -2.73 16 3 C 0.21 5.13 1.72 -68.86 -0.12 5.01 16 4 H 0.04 1.02 7.91 -51.93 -0.41 0.61 16 5 C -0.54 -14.15 7.26 -34.44 -0.25 -14.40 16 6 H 0.06 1.50 5.88 -52.49 -0.31 1.20 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.55 11.30 55.43 0.63 -23.92 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 N -0.53 -10.98 3.98 -237.73 -0.95 -11.92 16 14 C 0.03 0.56 8.69 60.07 0.52 1.08 16 15 C 0.10 1.90 4.66 -4.98 -0.02 1.88 16 16 C -0.05 -0.84 5.04 -104.63 -0.53 -1.36 16 17 C -0.11 -1.63 8.12 -39.59 -0.32 -1.95 16 18 C -0.12 -1.62 9.96 -39.43 -0.39 -2.01 16 19 C 0.03 0.51 6.49 -39.14 -0.25 0.25 16 20 C 0.05 0.71 6.49 -39.14 -0.25 0.45 16 21 C -0.09 -1.53 9.61 -39.43 -0.38 -1.91 16 22 O -0.31 -4.27 10.42 -32.88 -0.34 -4.61 16 23 C 0.02 0.20 7.26 37.40 0.27 0.47 16 24 C 0.02 0.19 7.26 37.40 0.27 0.46 16 25 O -0.31 -4.05 10.42 -32.84 -0.34 -4.39 16 26 H 0.05 1.03 7.57 -51.93 -0.39 0.64 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.77 6.33 -51.93 -0.33 0.45 16 30 H 0.09 2.41 5.99 -51.93 -0.31 2.10 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.06 1.17 6.34 -51.93 -0.33 0.84 16 33 H 0.04 0.75 6.04 -51.93 -0.31 0.44 16 34 H 0.03 0.66 6.22 -51.93 -0.32 0.34 16 35 H 0.08 1.46 7.78 -51.93 -0.40 1.06 16 36 H 0.05 0.90 7.37 -51.93 -0.38 0.52 16 37 H 0.13 1.78 7.89 -52.49 -0.41 1.36 16 38 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -29.06 338.37 -8.68 -37.74 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.44 Total: 1.73 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -1.32 Total: -15.54 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.32 Total: -35.84 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.68 Total: -9.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.06 -8.68 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.956 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds