Wall clock time and date at job start Tue Mar 31 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46546 * 2 1 4 4 H 1.09001 * 109.46773 * 56.56389 * 3 2 1 5 5 C 1.50701 * 109.46878 * 176.55683 * 3 2 1 6 6 H 1.08002 * 119.99868 * 119.72419 * 5 3 2 7 7 C 1.37877 * 120.00344 * 300.00500 * 5 3 2 8 8 N 1.31509 * 119.99936 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00073 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47202 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47061 * 119.99766 * 9 7 5 12 12 H 1.48496 * 109.47584 * 239.99894 * 9 7 5 13 13 N 1.46900 * 109.47421 * 296.56241 * 3 2 1 14 14 C 1.46902 * 110.99730 * 295.93717 * 13 3 2 15 15 C 1.46896 * 111.00050 * 171.98292 * 13 3 2 16 16 C 1.50697 * 109.47006 * 195.89887 * 15 13 3 17 17 C 1.38255 * 119.94633 * 269.72426 * 16 15 13 18 18 C 1.38196 * 120.10948 * 179.78044 * 17 16 15 19 19 C 1.38696 * 120.07154 * 0.56136 * 18 17 16 20 20 C 1.38978 * 119.81803 * 359.62610 * 19 18 17 21 21 C 1.38195 * 119.94279 * 90.00561 * 16 15 13 22 22 O 1.36110 * 120.78444 * 180.26327 * 20 19 18 23 23 C 1.43169 * 116.71466 * 342.81615 * 22 20 19 24 24 C 1.53468 * 108.25186 * 46.16085 * 23 22 20 25 25 O 1.36099 * 119.40090 * 179.53839 * 19 18 17 26 26 H 1.08998 * 109.47018 * 55.13298 * 1 2 3 27 27 H 1.08998 * 109.46593 * 175.13265 * 1 2 3 28 28 H 1.09001 * 109.47179 * 295.13183 * 1 2 3 29 29 H 1.08993 * 109.47210 * 240.00377 * 2 1 3 30 30 H 1.09000 * 109.47421 * 119.99873 * 2 1 3 31 31 H 0.96997 * 119.99959 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47234 * 59.99900 * 14 13 3 33 33 H 1.08995 * 109.47095 * 180.02562 * 14 13 3 34 34 H 1.09000 * 109.47206 * 300.00150 * 14 13 3 35 35 H 1.08999 * 109.47229 * 315.90690 * 15 13 3 36 36 H 1.09007 * 109.47266 * 75.89728 * 15 13 3 37 37 H 1.07996 * 119.94113 * 0.03758 * 17 16 15 38 38 H 1.08000 * 119.95971 * 180.29833 * 18 17 16 39 39 H 1.08008 * 119.96582 * 359.94328 * 21 16 15 40 40 H 1.08998 * 109.71170 * 165.84989 * 23 22 20 41 41 H 1.09001 * 109.71055 * 286.47735 * 23 22 20 42 42 H 1.09007 * 109.70952 * 59.94343 * 24 23 22 43 43 H 1.09002 * 109.71563 * 180.57552 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6271 1.9738 0.8576 5 6 3.5445 1.4435 0.0853 6 1 4.1299 1.8913 -0.7042 7 6 4.1740 0.8677 1.1685 8 7 3.4614 0.3180 2.1274 9 14 6.0390 0.8683 1.2738 10 1 6.6022 1.5444 0.0776 11 1 6.4654 1.5928 2.4979 12 1 6.5322 -0.5313 1.3299 13 7 1.6192 2.1107 -1.2388 14 6 2.2358 1.4791 -2.4131 15 6 1.9247 3.5468 -1.1922 16 6 1.1512 4.2601 -2.2711 17 6 1.7075 4.4233 -3.5261 18 6 0.9994 5.0728 -4.5193 19 6 -0.2671 5.5732 -4.2560 20 6 -0.8249 5.4125 -2.9932 21 6 -0.1108 4.7551 -2.0025 22 8 -2.0684 5.8909 -2.7149 23 6 -2.5997 6.8664 -3.6182 24 6 -2.3592 6.3751 -5.0521 25 8 -0.9486 6.2188 -5.2414 26 1 -0.3633 0.5875 -0.8432 27 1 -0.3632 -1.0240 -0.0872 28 1 -0.3633 0.4365 0.9304 29 1 1.8934 -0.5137 -0.8900 30 1 1.8935 -0.5138 0.8900 31 1 3.9043 -0.0868 2.8895 32 1 1.9365 0.4321 -2.4616 33 1 1.9079 1.9934 -3.3164 34 1 3.3209 1.5434 -2.3324 35 1 1.6431 3.9468 -0.2182 36 1 2.9926 3.6965 -1.3514 37 1 2.6956 4.0388 -3.7319 38 1 1.4344 5.1947 -5.5003 39 1 -0.5418 4.6295 -1.0201 40 1 -3.6694 6.9841 -3.4446 41 1 -2.0951 7.8207 -3.4672 42 1 -2.8584 5.4176 -5.2012 43 1 -2.7465 7.1067 -5.7613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:28 Heat of formation + Delta-G solvation = -60.407819 kcal Electronic energy + Delta-G solvation = -23695.406873 eV Core-core repulsion = 20319.631433 eV Total energy + Delta-G solvation = -3375.775440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.16076 -39.70461 -38.18747 -38.13935 -34.80887 -33.32778 -31.96326 -31.73815 -29.77051 -28.62443 -27.69215 -25.85639 -25.12816 -23.97291 -22.99295 -21.27147 -20.81707 -19.48309 -18.46012 -18.16596 -17.96956 -17.08958 -16.37286 -16.14669 -16.04589 -15.62149 -15.44960 -15.31510 -14.84932 -14.77730 -14.63334 -14.38294 -13.93385 -13.68142 -13.39962 -13.16407 -12.89390 -12.81741 -12.59153 -12.52977 -12.26671 -12.24873 -11.93843 -11.88794 -11.81589 -11.54802 -11.41972 -11.22652 -10.96030 -10.41189 -9.54175 -9.04496 -8.81506 -7.99679 -6.22360 0.32516 0.36958 1.38218 1.41734 1.50715 2.10832 2.33364 2.42580 2.70511 3.18719 3.35445 3.63721 3.72791 3.97811 4.02412 4.15075 4.18361 4.37998 4.45129 4.52379 4.56368 4.62071 4.69790 4.70199 4.78288 4.93422 4.94011 4.97421 5.07188 5.15034 5.20296 5.21473 5.34230 5.44569 5.52449 5.64148 5.67046 5.74228 5.83178 5.96754 6.08944 6.22175 6.41547 6.47607 6.68152 6.98888 7.48573 8.95266 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025692 B = 0.003776 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.583734 B = 7413.232793 C = 7872.634911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.054 0.946 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.530 5.530 14 C 0.036 3.964 15 C 0.108 3.892 16 C -0.063 4.063 17 C -0.110 4.110 18 C -0.113 4.113 19 C 0.035 3.965 20 C 0.041 3.959 21 C -0.109 4.109 22 O -0.327 6.327 23 C 0.013 3.987 24 C 0.015 3.985 25 O -0.321 6.321 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.018 0.982 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.125 0.875 40 H 0.152 0.848 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 11.781 -14.217 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.589 4.589 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.253 5.253 14 C -0.113 4.113 15 C -0.020 4.020 16 C -0.064 4.064 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.010 4.010 20 C -0.003 4.003 21 C -0.128 4.128 22 O -0.242 6.242 23 C -0.062 4.062 24 C -0.059 4.059 25 O -0.236 6.236 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.157 0.843 38 H 0.170 0.830 39 H 0.143 0.857 40 H 0.170 0.830 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.989 11.666 -14.099 21.346 hybrid contribution 1.804 -0.102 0.732 1.949 sum -9.185 11.564 -13.367 19.919 Atomic orbital electron populations 1.21587 0.96534 0.99867 1.00516 1.21441 0.94266 0.98233 1.00408 1.19090 0.91763 0.91440 0.86486 0.97780 1.22030 0.93917 1.37229 1.05689 0.92760 1.25598 1.01758 0.94965 0.95495 1.70010 1.36267 1.38702 1.10136 0.85701 0.81617 0.77604 0.77851 1.19466 1.20931 1.20803 1.62408 1.57821 1.01168 1.03891 1.22248 0.96766 0.99242 0.92999 1.20715 0.96283 0.88974 0.96007 1.19621 0.93900 0.97398 0.95461 1.20969 1.00728 0.99366 0.91778 1.20579 0.92479 0.99066 1.00992 1.18951 0.94811 1.00459 0.86768 1.18885 0.87156 1.01437 0.92862 1.20305 0.93673 1.00341 0.98487 1.86287 1.28244 1.57401 1.52294 1.23964 1.02962 0.90514 0.88714 1.23937 0.78917 1.04333 0.98747 1.86257 1.22335 1.73157 1.41834 0.92555 0.93603 0.94915 0.94868 0.91948 0.93024 0.92626 0.91340 0.96301 0.92097 0.94519 0.84304 0.82967 0.85695 0.83033 0.90243 0.90535 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.85 71.98 0.71 -4.51 16 2 C -0.10 -5.03 5.08 30.60 0.16 -4.87 16 3 C 0.22 10.88 1.72 44.17 0.08 10.95 16 4 H 0.00 0.24 7.91 -2.39 -0.02 0.22 16 5 C -0.55 -29.22 7.26 25.60 0.19 -29.04 16 6 H 0.05 2.87 5.88 -2.91 -0.02 2.86 16 7 C 0.02 1.17 5.30 84.66 0.45 1.62 16 8 N -0.91 -51.82 11.30 21.45 0.24 -51.58 16 9 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.53 -22.22 3.98 -906.04 -3.60 -25.83 16 14 C 0.04 1.38 8.69 127.69 1.11 2.49 16 15 C 0.11 4.18 4.66 85.56 0.40 4.58 16 16 C -0.06 -2.07 5.04 -19.87 -0.10 -2.17 16 17 C -0.11 -3.13 8.12 22.26 0.18 -2.95 16 18 C -0.11 -2.93 9.96 22.37 0.22 -2.70 16 19 C 0.04 0.96 6.49 22.56 0.15 1.11 16 20 C 0.04 1.23 6.49 22.56 0.15 1.38 16 21 C -0.11 -3.55 9.61 22.37 0.22 -3.33 16 22 O -0.33 -8.62 10.42 -82.58 -0.86 -9.48 16 23 C 0.01 0.20 7.26 72.14 0.52 0.73 16 24 C 0.02 0.23 7.26 72.14 0.52 0.75 16 25 O -0.32 -7.42 10.42 -82.45 -0.86 -8.27 16 26 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.03 1.55 6.33 -2.39 -0.02 1.54 16 30 H 0.06 3.37 5.99 -2.39 -0.01 3.36 16 31 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.05 2.16 6.34 -2.39 -0.02 2.14 16 33 H 0.07 2.28 6.04 -2.39 -0.01 2.26 16 34 H 0.02 0.76 6.22 -2.39 -0.01 0.75 16 35 H 0.06 2.48 7.78 -2.39 -0.02 2.46 16 36 H 0.04 1.47 7.37 -2.38 -0.02 1.45 16 37 H 0.14 3.61 7.89 -2.91 -0.02 3.59 16 38 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -63.26 338.37 2.89 -60.37 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.00 Total: 15.53 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 4.94 Total: -25.97 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -3.36 Total: -77.41 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -1.72 Total: -17.75 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -63.26 2.89 -60.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.039 kcal (2) G-P(sol) polarization free energy of solvation -63.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds