Wall clock time and date at job start Tue Mar 31 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47254 * 2 1 4 4 H 1.09001 * 109.46829 * 55.46622 * 3 2 1 5 5 C 1.50695 * 109.47633 * 175.47125 * 3 2 1 6 6 H 1.07997 * 120.00312 * 114.77804 * 5 3 2 7 7 C 1.37882 * 119.99573 * 294.78501 * 5 3 2 8 8 N 1.31513 * 120.00059 * 168.95138 * 7 5 3 9 9 Si 1.86799 * 120.00277 * 348.94834 * 7 5 3 10 10 H 1.48500 * 109.47185 * 274.59334 * 9 7 5 11 11 H 1.48503 * 109.46935 * 34.59157 * 9 7 5 12 12 H 1.48494 * 109.47166 * 154.58929 * 9 7 5 13 13 N 1.46901 * 109.47225 * 295.47411 * 3 2 1 14 14 C 1.46899 * 111.00352 * 84.96419 * 13 3 2 15 15 C 1.50701 * 109.46660 * 76.99141 * 14 13 3 16 16 O 1.20827 * 120.00323 * 5.50314 * 15 14 13 17 17 O 1.34231 * 119.99701 * 185.50946 * 15 14 13 18 18 C 1.45202 * 117.00007 * 180.02562 * 17 15 14 19 19 C 1.46901 * 110.99775 * 321.01041 * 13 3 2 20 20 C 1.50697 * 109.47220 * 196.70410 * 19 13 3 21 21 C 1.38234 * 120.00203 * 269.72695 * 20 19 13 22 22 C 1.38232 * 120.00112 * 179.76449 * 21 20 19 23 23 C 1.38243 * 119.99934 * 0.51105 * 22 21 20 24 24 C 1.38229 * 119.99791 * 359.74535 * 23 22 21 25 25 C 1.38233 * 120.00043 * 90.00337 * 20 19 13 26 26 H 1.08994 * 109.46968 * 190.12091 * 1 2 3 27 27 H 1.08995 * 109.47545 * 310.12531 * 1 2 3 28 28 H 1.09010 * 109.47317 * 70.12439 * 1 2 3 29 29 H 1.09001 * 109.47041 * 240.00432 * 2 1 3 30 30 H 1.08990 * 109.47702 * 120.00182 * 2 1 3 31 31 H 0.96998 * 120.00200 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47101 * 196.98667 * 14 13 3 33 33 H 1.08995 * 109.47361 * 316.99319 * 14 13 3 34 34 H 1.08997 * 109.47435 * 59.99734 * 18 17 15 35 35 H 1.09001 * 109.47355 * 179.97438 * 18 17 15 36 36 H 1.09004 * 109.46925 * 299.99475 * 18 17 15 37 37 H 1.09003 * 109.47418 * 316.70664 * 19 13 3 38 38 H 1.09008 * 109.47158 * 76.70818 * 19 13 3 39 39 H 1.07995 * 120.00172 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.00403 * 180.23241 * 22 21 20 41 41 H 1.08000 * 119.99950 * 179.72704 * 23 22 21 42 42 H 1.08003 * 119.99963 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99933 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6119 1.9792 0.8466 5 6 3.5428 1.4441 0.1122 6 1 4.1449 1.8141 -0.7044 7 6 4.1490 0.9729 1.2574 8 7 5.4482 0.7696 1.2777 9 14 3.1251 0.6235 2.7802 10 1 2.9599 1.8743 3.5634 11 1 1.7908 0.1143 2.3734 12 1 3.8106 -0.3960 3.6144 13 7 1.6417 2.1028 -1.2503 14 6 0.2820 2.6493 -1.1472 15 6 0.3128 3.9243 -0.3444 16 8 1.3699 4.3886 0.0118 17 8 -0.8342 4.5441 -0.0249 18 6 -0.7287 5.7679 0.7495 19 6 1.7542 1.1831 -2.3903 20 6 1.7431 1.9713 -3.6746 21 6 0.5456 2.2378 -4.3117 22 6 0.5349 2.9650 -5.4873 23 6 1.7228 3.4167 -6.0314 24 6 2.9207 3.1457 -5.3971 25 6 2.9308 2.4230 -4.2187 26 1 -0.3633 -1.0116 0.1806 27 1 -0.3634 0.6622 0.7857 28 1 -0.3634 0.3494 -0.9665 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8898 31 1 5.8747 0.4385 2.0835 32 1 -0.1025 2.8578 -2.1455 33 1 -0.3645 1.9243 -0.6528 34 1 -0.1448 6.5009 0.1929 35 1 -1.7258 6.1656 0.9381 36 1 -0.2362 5.5559 1.6986 37 1 2.6868 0.6239 -2.3153 38 1 0.9131 0.4898 -2.3823 39 1 -0.3820 1.8808 -3.8893 40 1 -0.4010 3.1764 -5.9831 41 1 1.7148 3.9811 -6.9522 42 1 3.8487 3.4983 -5.8224 43 1 3.8668 2.2114 -3.7232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:51 Heat of formation + Delta-G solvation = -53.143135 kcal Electronic energy + Delta-G solvation = -24438.332253 eV Core-core repulsion = 21062.871833 eV Total energy + Delta-G solvation = -3375.460420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.56945 -40.37977 -39.04170 -37.25726 -34.87604 -33.51549 -32.15779 -31.69018 -30.49825 -29.07939 -27.78182 -25.63323 -24.09905 -23.39835 -22.30099 -22.00351 -20.76616 -18.88565 -18.62893 -17.89007 -17.48496 -17.33989 -17.03350 -16.32062 -15.96183 -15.65251 -15.38680 -15.03940 -14.90381 -14.45072 -14.19103 -14.03082 -13.98435 -13.64800 -13.48543 -13.27885 -13.06401 -12.91973 -12.81257 -12.64206 -12.46810 -12.24037 -11.81865 -11.79036 -11.70854 -11.65923 -11.32588 -11.15953 -11.09548 -10.58077 -9.71637 -9.57449 -8.87004 -8.25603 -6.22610 0.51751 0.59643 1.28592 1.33218 1.34316 1.40085 1.75793 2.34599 2.89481 3.09063 3.37939 3.92521 3.97934 4.05195 4.21331 4.24074 4.25919 4.29388 4.33482 4.34502 4.35531 4.38212 4.48668 4.53696 4.69228 4.71273 4.74798 4.85506 4.91435 5.05658 5.19999 5.20310 5.22762 5.28085 5.42088 5.52347 5.63701 5.68283 5.70223 5.85628 6.02523 6.21626 6.37912 6.63746 6.80967 6.95945 7.38813 8.92034 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012392 B = 0.006697 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.036071 B = 4179.908808 C = 5281.932713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.167 4.167 3 C 0.204 3.796 4 H 0.015 0.985 5 C -0.489 4.489 6 H 0.029 0.971 7 C 0.013 3.987 8 N -0.949 5.949 9 Si 0.914 3.086 10 H -0.290 1.290 11 H -0.209 1.209 12 H -0.287 1.287 13 N -0.523 5.523 14 C 0.040 3.960 15 C 0.450 3.550 16 O -0.521 6.521 17 O -0.364 6.364 18 C 0.029 3.971 19 C 0.106 3.894 20 C -0.085 4.085 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.124 4.124 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.262 0.738 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.140 0.860 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.129 0.871 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.526 3.248 -10.353 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.206 4.206 3 C 0.097 3.903 4 H 0.033 0.967 5 C -0.527 4.527 6 H 0.048 0.952 7 C -0.184 4.184 8 N -0.591 5.591 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.131 1.131 12 H -0.213 1.213 13 N -0.247 5.247 14 C -0.089 4.089 15 C 0.292 3.708 16 O -0.408 6.408 17 O -0.281 6.281 18 C -0.064 4.064 19 C -0.020 4.020 20 C -0.086 4.086 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.142 4.142 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.158 0.842 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.162 0.838 40 H 0.170 0.830 41 H 0.163 0.837 42 H 0.147 0.853 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.751 3.744 -10.190 20.808 hybrid contribution 0.678 -0.361 1.493 1.679 sum -17.074 3.383 -8.697 19.458 Atomic orbital electron populations 1.22134 0.94733 1.02542 1.01959 1.22718 0.96360 0.99260 1.02277 1.19426 0.93840 0.89678 0.87394 0.96708 1.21087 0.91263 1.38930 1.01455 0.95224 1.25681 0.95743 0.95348 1.01600 1.70076 1.11678 1.48096 1.29223 0.86488 0.82237 0.77687 0.79641 1.21711 1.13131 1.21300 1.61474 1.21563 1.37461 1.04178 1.22230 0.93293 0.91623 1.01716 1.24384 0.81622 0.86690 0.78102 1.90728 1.33259 1.65650 1.51123 1.86459 1.34639 1.39594 1.67422 1.23475 1.05540 0.83088 0.94293 1.20993 1.01984 0.92492 0.86578 1.19988 0.94005 0.98909 0.95665 1.21316 0.97082 0.99501 0.96266 1.21472 0.99151 0.97473 0.95668 1.21452 0.92164 1.00193 1.00736 1.21347 0.99534 0.98703 0.95299 1.21138 0.97902 0.98764 0.96440 0.91094 0.93142 0.90556 0.91536 0.92860 0.92911 0.84899 0.87144 0.92529 0.84188 0.93225 0.91781 0.91223 0.83780 0.82990 0.83656 0.85304 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 8.11 71.98 0.58 -3.81 16 2 C -0.17 -6.49 4.20 30.59 0.13 -6.36 16 3 C 0.20 9.47 1.09 44.17 0.05 9.52 16 4 H 0.02 0.74 5.87 -2.39 -0.01 0.73 16 5 C -0.49 -28.83 8.72 25.60 0.22 -28.61 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.01 0.76 5.39 84.66 0.46 1.22 16 8 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 9 Si 0.91 44.78 25.88 68.60 1.78 46.55 16 10 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 11 H -0.21 -8.81 5.12 99.48 0.51 -8.30 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 13 N -0.52 -21.00 3.79 -884.47 -3.35 -24.35 16 14 C 0.04 1.25 4.83 85.56 0.41 1.67 16 15 C 0.45 16.46 7.41 71.24 0.53 16.98 16 16 O -0.52 -24.48 15.59 21.96 0.34 -24.14 16 17 O -0.36 -10.62 10.57 -51.43 -0.54 -11.16 16 18 C 0.03 0.69 10.56 113.37 1.20 1.88 16 19 C 0.11 3.67 3.53 85.56 0.30 3.97 16 20 C -0.09 -2.66 5.11 -19.87 -0.10 -2.76 16 21 C -0.12 -2.90 8.16 22.27 0.18 -2.72 16 22 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 23 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 24 C -0.13 -3.58 10.05 22.27 0.22 -3.35 16 25 C -0.12 -4.19 9.70 22.27 0.22 -3.97 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.41 7.60 -2.39 -0.02 1.40 16 28 H 0.08 1.77 4.75 -2.38 -0.01 1.76 16 29 H 0.07 2.54 6.07 -2.39 -0.01 2.53 16 30 H 0.05 2.24 4.42 -2.39 -0.01 2.23 16 31 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 32 H 0.13 3.42 5.25 -2.39 -0.01 3.40 16 33 H 0.11 2.98 3.98 -2.39 -0.01 2.97 16 34 H 0.06 1.36 8.13 -2.39 -0.02 1.35 16 35 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 37 H 0.06 2.65 6.91 -2.39 -0.02 2.64 16 38 H 0.07 1.96 5.72 -2.38 -0.01 1.95 16 39 H 0.14 2.53 7.43 -2.91 -0.02 2.51 16 40 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.09 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -78.42 335.21 4.19 -74.24 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.82 Total: 21.12 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 4.85 Total: -21.11 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -3.05 Total: -85.49 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.20 Total: -35.30 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.78 Total: 46.55 kcal Total: -78.42 4.19 -74.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.094 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds