Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47049 * 2 1 4 4 H 1.08994 * 109.47561 * 305.55449 * 3 2 1 5 5 C 1.50700 * 109.47112 * 185.55557 * 3 2 1 6 6 H 1.08004 * 120.00068 * 275.35911 * 5 3 2 7 7 C 1.37882 * 120.00058 * 95.35215 * 5 3 2 8 8 N 1.31520 * 119.99803 * 184.83370 * 7 5 3 9 9 Si 1.86796 * 119.99904 * 4.84125 * 7 5 3 10 10 H 1.48503 * 109.47308 * 94.80465 * 9 7 5 11 11 H 1.48499 * 109.47183 * 214.80609 * 9 7 5 12 12 H 1.48499 * 109.46925 * 334.80494 * 9 7 5 13 13 N 1.46893 * 109.47511 * 65.55636 * 3 2 1 14 14 C 1.46901 * 111.00421 * 208.39730 * 13 3 2 15 15 C 1.50694 * 109.47183 * 71.73681 * 14 13 3 16 16 O 1.20829 * 120.00046 * 5.26760 * 15 14 13 17 17 O 1.34230 * 120.00301 * 185.27565 * 15 14 13 18 18 C 1.45200 * 117.00340 * 179.97438 * 17 15 14 19 19 C 1.46901 * 111.00189 * 84.44176 * 13 3 2 20 20 C 1.50706 * 109.47005 * 290.40510 * 19 13 3 21 21 C 1.38235 * 119.99966 * 278.20569 * 20 19 13 22 22 C 1.38233 * 119.99940 * 179.76290 * 21 20 19 23 23 C 1.38233 * 119.99808 * 0.51821 * 22 21 20 24 24 C 1.38235 * 120.00092 * 359.74089 * 23 22 21 25 25 C 1.38232 * 120.00022 * 359.97438 * 24 23 22 26 26 H 1.09010 * 109.46931 * 300.00196 * 1 2 3 27 27 H 1.09005 * 109.46957 * 59.99704 * 1 2 3 28 28 H 1.08999 * 109.47209 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47183 * 239.99457 * 2 1 3 30 30 H 1.09004 * 109.46923 * 119.99742 * 2 1 3 31 31 H 0.97003 * 119.99359 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47268 * 191.73884 * 14 13 3 33 33 H 1.09004 * 109.46829 * 311.73576 * 14 13 3 34 34 H 1.08995 * 109.46946 * 299.99925 * 18 17 15 35 35 H 1.09006 * 109.46727 * 59.99892 * 18 17 15 36 36 H 1.08999 * 109.47277 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.46961 * 50.40341 * 19 13 3 38 38 H 1.08999 * 109.47270 * 170.40416 * 19 13 3 39 39 H 1.08002 * 119.99752 * 0.02562 * 21 20 19 40 40 H 1.07995 * 120.00415 * 180.23173 * 22 21 20 41 41 H 1.08002 * 120.00197 * 179.72096 * 23 22 21 42 42 H 1.08008 * 120.00258 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.00297 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8360 5 6 3.5407 1.4447 -0.1376 6 1 4.1633 1.3281 0.7372 7 6 4.1189 1.5954 -1.3802 8 7 5.4240 1.5024 -1.5138 9 14 3.0486 1.9319 -2.8737 10 1 2.9813 3.3957 -3.1148 11 1 3.6327 1.2607 -4.0626 12 1 1.6809 1.4068 -2.6309 13 7 1.6629 2.0952 1.2608 14 6 1.5040 3.5439 1.0766 15 6 0.2498 3.8153 0.2866 16 8 -0.4905 2.9053 -0.0032 17 8 -0.0450 5.0679 -0.0955 18 6 -1.2688 5.2549 -0.8542 19 6 2.6403 1.8030 2.3178 20 6 2.5377 0.3514 2.7095 21 6 1.5598 -0.0575 3.5970 22 6 1.4626 -1.3898 3.9525 23 6 2.3499 -2.3114 3.4289 24 6 3.3311 -1.9016 2.5457 25 6 3.4247 -0.5703 2.1855 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8307 1.6088 -2.3880 32 1 1.4319 4.0283 2.0505 33 1 2.3655 3.9383 0.5377 34 1 -1.2185 4.6723 -1.7741 35 1 -2.1195 4.9222 -0.2594 36 1 -1.3872 6.3106 -1.0984 37 1 3.6455 2.0100 1.9505 38 1 2.4347 2.4291 3.1860 39 1 0.8692 0.6633 4.0092 40 1 0.6963 -1.7099 4.6429 41 1 2.2768 -3.3516 3.7102 42 1 4.0247 -2.6216 2.1368 43 1 4.1915 -0.2500 1.4958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = -35.246211 kcal Electronic energy + Delta-G solvation = -24934.650336 eV Core-core repulsion = 21559.965985 eV Total energy + Delta-G solvation = -3374.684351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08605 -39.14360 -37.02181 -35.72182 -32.81512 -31.81845 -31.27469 -30.28192 -28.48777 -27.22319 -26.26722 -24.06394 -22.42888 -21.97258 -20.67010 -20.46061 -19.01678 -17.32236 -17.03067 -16.37753 -16.13032 -15.88269 -14.90919 -14.61608 -14.45907 -14.21137 -13.86373 -13.34828 -13.04281 -12.97569 -12.67101 -12.55274 -12.36903 -12.16900 -11.85218 -11.79085 -11.63275 -11.36636 -11.10558 -10.95736 -10.57617 -10.48515 -10.37677 -10.29071 -9.99744 -9.79524 -9.66010 -9.46926 -9.14485 -8.61291 -8.27573 -7.84016 -7.22984 -6.19712 -4.21909 1.93090 2.02875 2.73562 3.04260 3.19867 3.31132 3.39164 4.32826 4.34964 4.94987 5.17487 5.23962 5.28082 5.32561 5.42203 5.43386 5.56699 5.64522 5.67124 5.78308 5.93652 6.03877 6.12202 6.25298 6.33709 6.39293 6.45029 6.58486 6.64195 6.72332 6.75938 6.80908 7.01700 7.04978 7.13048 7.27310 7.32183 7.40316 7.48687 7.52443 7.64451 7.85576 8.08839 8.30787 8.42894 8.82585 9.45382 10.90320 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.007777 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.260849 B = 3599.623508 C = 4829.751236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.117 4.117 3 C 0.179 3.821 4 H 0.039 0.961 5 C -0.553 4.553 6 H 0.096 0.904 7 C 0.084 3.916 8 N -0.891 5.891 9 Si 0.857 3.143 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.512 5.512 14 C 0.066 3.934 15 C 0.455 3.545 16 O -0.481 6.481 17 O -0.370 6.370 18 C 0.038 3.962 19 C 0.086 3.914 20 C -0.053 4.053 21 C -0.105 4.105 22 C -0.136 4.136 23 C -0.130 4.130 24 C -0.133 4.133 25 C -0.088 4.088 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.020 0.980 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.264 0.736 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 2.078 7.139 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C 0.073 3.927 4 H 0.057 0.943 5 C -0.591 4.591 6 H 0.113 0.887 7 C -0.120 4.120 8 N -0.528 5.528 9 Si 0.684 3.316 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.237 5.237 14 C -0.064 4.064 15 C 0.297 3.703 16 O -0.365 6.365 17 O -0.287 6.287 18 C -0.056 4.056 19 C -0.041 4.041 20 C -0.054 4.054 21 C -0.124 4.124 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.152 4.152 25 C -0.106 4.106 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.473 1.633 7.027 11.128 hybrid contribution -0.014 0.402 -1.554 1.605 sum -8.486 2.035 5.474 10.301 Atomic orbital electron populations 1.21632 0.97663 0.97842 1.01706 1.21991 0.93765 0.98328 1.01381 1.19825 0.94235 0.92003 0.86645 0.94335 1.21822 0.90768 1.51195 0.95343 0.88666 1.24985 0.94557 0.94002 0.98478 1.69904 1.09586 1.49037 1.24251 0.87126 0.82294 0.78808 0.83394 1.20437 1.21185 1.18091 1.62250 1.46830 1.04948 1.09628 1.21435 0.92339 0.93244 0.99350 1.24031 0.88139 0.80133 0.78034 1.90656 1.49620 1.44665 1.51572 1.86501 1.42786 1.32334 1.67108 1.23125 0.84769 1.02259 0.95457 1.21112 0.97870 0.91906 0.93175 1.19668 0.94754 0.95655 0.95308 1.20922 0.97683 0.95498 0.98305 1.20937 0.99564 0.93632 1.01265 1.20986 0.96462 0.98732 0.98688 1.21105 0.99026 0.96317 0.98706 1.21589 0.99176 0.92531 0.97308 0.92038 0.94540 0.96116 0.94102 0.90676 0.92584 0.88051 0.89992 0.92313 0.92248 0.88708 0.90120 0.92160 0.86865 0.87229 0.87287 0.86819 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 8.75 37.16 0.33 -2.44 16 2 C -0.12 -2.61 5.14 -26.73 -0.14 -2.74 16 3 C 0.18 4.06 0.71 -68.87 -0.05 4.01 16 4 H 0.04 0.95 3.57 -51.93 -0.19 0.77 16 5 C -0.55 -13.79 6.82 -34.44 -0.23 -14.02 16 6 H 0.10 2.44 3.68 -52.48 -0.19 2.24 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 8 N -0.89 -25.31 13.96 55.43 0.77 -24.54 16 9 Si 0.86 21.10 27.31 -169.99 -4.64 16.45 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.38 6.36 56.52 0.36 -6.03 16 13 N -0.51 -9.97 3.47 -230.92 -0.80 -10.77 16 14 C 0.07 1.15 5.49 -4.98 -0.03 1.12 16 15 C 0.46 8.33 7.31 36.00 0.26 8.59 16 16 O -0.48 -9.92 13.23 -18.75 -0.25 -10.16 16 17 O -0.37 -5.94 10.57 -39.26 -0.41 -6.35 16 18 C 0.04 0.48 10.56 101.05 1.07 1.55 16 19 C 0.09 1.54 4.78 -4.97 -0.02 1.52 16 20 C -0.05 -0.95 3.60 -104.62 -0.38 -1.33 16 21 C -0.11 -1.70 9.73 -39.58 -0.39 -2.09 16 22 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 23 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 24 C -0.13 -2.22 9.93 -39.58 -0.39 -2.61 16 25 C -0.09 -1.64 6.59 -39.59 -0.26 -1.90 16 26 H 0.06 1.31 7.35 -51.92 -0.38 0.93 16 27 H 0.04 0.80 7.71 -51.93 -0.40 0.40 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.62 3.30 -51.93 -0.17 1.45 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.10 1.42 7.76 -51.93 -0.40 1.02 16 33 H 0.08 1.52 7.94 -51.93 -0.41 1.11 16 34 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.62 5.16 -51.93 -0.27 1.35 16 38 H 0.06 0.92 7.77 -51.93 -0.40 0.52 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 43 H 0.14 3.05 5.63 -52.48 -0.30 2.75 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -29.45 335.19 -7.50 -36.95 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.10 Total: 6.34 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.13 Total: -12.98 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.03 Total: -35.31 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.66 Total: -16.52 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.64 Total: 16.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.45 -7.50 -36.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.706 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds