Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47049 * 2 1 4 4 H 1.08994 * 109.47561 * 305.55449 * 3 2 1 5 5 C 1.50700 * 109.47112 * 185.55557 * 3 2 1 6 6 H 1.08004 * 120.00068 * 275.35911 * 5 3 2 7 7 C 1.37882 * 120.00058 * 95.35215 * 5 3 2 8 8 N 1.31520 * 119.99803 * 184.83370 * 7 5 3 9 9 Si 1.86796 * 119.99904 * 4.84125 * 7 5 3 10 10 H 1.48503 * 109.47308 * 94.80465 * 9 7 5 11 11 H 1.48499 * 109.47183 * 214.80609 * 9 7 5 12 12 H 1.48499 * 109.46925 * 334.80494 * 9 7 5 13 13 N 1.46893 * 109.47511 * 65.55636 * 3 2 1 14 14 C 1.46901 * 111.00421 * 208.39730 * 13 3 2 15 15 C 1.50694 * 109.47183 * 71.73681 * 14 13 3 16 16 O 1.20829 * 120.00046 * 5.26760 * 15 14 13 17 17 O 1.34230 * 120.00301 * 185.27565 * 15 14 13 18 18 C 1.45200 * 117.00340 * 179.97438 * 17 15 14 19 19 C 1.46901 * 111.00189 * 84.44176 * 13 3 2 20 20 C 1.50706 * 109.47005 * 290.40510 * 19 13 3 21 21 C 1.38235 * 119.99966 * 278.20569 * 20 19 13 22 22 C 1.38233 * 119.99940 * 179.76290 * 21 20 19 23 23 C 1.38233 * 119.99808 * 0.51821 * 22 21 20 24 24 C 1.38235 * 120.00092 * 359.74089 * 23 22 21 25 25 C 1.38232 * 120.00022 * 359.97438 * 24 23 22 26 26 H 1.09010 * 109.46931 * 300.00196 * 1 2 3 27 27 H 1.09005 * 109.46957 * 59.99704 * 1 2 3 28 28 H 1.08999 * 109.47209 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47183 * 239.99457 * 2 1 3 30 30 H 1.09004 * 109.46923 * 119.99742 * 2 1 3 31 31 H 0.97003 * 119.99359 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47268 * 191.73884 * 14 13 3 33 33 H 1.09004 * 109.46829 * 311.73576 * 14 13 3 34 34 H 1.08995 * 109.46946 * 299.99925 * 18 17 15 35 35 H 1.09006 * 109.46727 * 59.99892 * 18 17 15 36 36 H 1.08999 * 109.47277 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.46961 * 50.40341 * 19 13 3 38 38 H 1.08999 * 109.47270 * 170.40416 * 19 13 3 39 39 H 1.08002 * 119.99752 * 0.02562 * 21 20 19 40 40 H 1.07995 * 120.00415 * 180.23173 * 22 21 20 41 41 H 1.08002 * 120.00197 * 179.72096 * 23 22 21 42 42 H 1.08008 * 120.00258 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.00297 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8360 5 6 3.5407 1.4447 -0.1376 6 1 4.1633 1.3281 0.7372 7 6 4.1189 1.5954 -1.3802 8 7 5.4240 1.5024 -1.5138 9 14 3.0486 1.9319 -2.8737 10 1 2.9813 3.3957 -3.1148 11 1 3.6327 1.2607 -4.0626 12 1 1.6809 1.4068 -2.6309 13 7 1.6629 2.0952 1.2608 14 6 1.5040 3.5439 1.0766 15 6 0.2498 3.8153 0.2866 16 8 -0.4905 2.9053 -0.0032 17 8 -0.0450 5.0679 -0.0955 18 6 -1.2688 5.2549 -0.8542 19 6 2.6403 1.8030 2.3178 20 6 2.5377 0.3514 2.7095 21 6 1.5598 -0.0575 3.5970 22 6 1.4626 -1.3898 3.9525 23 6 2.3499 -2.3114 3.4289 24 6 3.3311 -1.9016 2.5457 25 6 3.4247 -0.5703 2.1855 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8307 1.6088 -2.3880 32 1 1.4319 4.0283 2.0505 33 1 2.3655 3.9383 0.5377 34 1 -1.2185 4.6723 -1.7741 35 1 -2.1195 4.9222 -0.2594 36 1 -1.3872 6.3106 -1.0984 37 1 3.6455 2.0100 1.9505 38 1 2.4347 2.4291 3.1860 39 1 0.8692 0.6633 4.0092 40 1 0.6963 -1.7099 4.6429 41 1 2.2768 -3.3516 3.7102 42 1 4.0247 -2.6216 2.1368 43 1 4.1915 -0.2500 1.4958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = -51.786137 kcal Electronic energy + Delta-G solvation = -24935.367561 eV Core-core repulsion = 21559.965985 eV Total energy + Delta-G solvation = -3375.401576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48660 -40.51087 -38.46671 -37.13489 -34.67163 -33.67885 -32.60245 -31.56345 -29.89436 -28.87707 -27.54135 -25.69618 -24.07124 -23.27423 -22.14811 -21.82424 -20.73311 -19.08829 -18.52167 -17.76809 -17.46105 -17.15220 -16.46136 -16.30180 -16.03581 -15.61119 -15.24771 -14.89917 -14.67623 -14.36117 -14.16967 -14.00965 -13.82674 -13.69284 -13.49562 -13.24379 -12.98847 -12.94039 -12.78993 -12.61464 -12.23872 -11.91357 -11.75438 -11.70919 -11.61609 -11.51005 -11.29660 -11.15869 -10.99205 -10.64427 -9.54963 -9.23299 -8.86426 -8.28318 -6.29714 0.65748 0.74373 1.19318 1.27690 1.33162 1.37635 1.79745 2.28815 2.98144 3.11105 3.51057 4.01150 4.12947 4.22490 4.31229 4.32635 4.35872 4.39249 4.48596 4.52136 4.58825 4.61550 4.68637 4.70821 4.81117 4.85363 4.94237 5.01219 5.07520 5.25352 5.36391 5.40838 5.42924 5.55388 5.56628 5.60492 5.75195 5.78181 5.84657 6.03881 6.13300 6.34428 6.35281 6.53379 6.82400 6.93457 7.39053 8.84128 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.007777 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.260849 B = 3599.623508 C = 4829.751236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 C 0.189 3.811 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.085 0.915 7 C 0.036 3.964 8 N -0.932 5.932 9 Si 0.900 3.100 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.262 1.262 13 N -0.509 5.509 14 C 0.060 3.940 15 C 0.456 3.544 16 O -0.509 6.509 17 O -0.371 6.371 18 C 0.031 3.969 19 C 0.089 3.911 20 C -0.068 4.068 21 C -0.107 4.107 22 C -0.130 4.130 23 C -0.126 4.126 24 C -0.143 4.143 25 C -0.111 4.111 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.037 0.963 29 H 0.016 0.984 30 H 0.085 0.915 31 H 0.262 0.738 32 H 0.142 0.858 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.132 0.868 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.120 0.880 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 2.127 9.034 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.156 4.156 3 C 0.082 3.918 4 H 0.037 0.963 5 C -0.570 4.570 6 H 0.103 0.897 7 C -0.163 4.163 8 N -0.573 5.573 9 Si 0.727 3.273 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.233 5.233 14 C -0.069 4.069 15 C 0.299 3.701 16 O -0.396 6.396 17 O -0.288 6.288 18 C -0.062 4.062 19 C -0.037 4.037 20 C -0.068 4.068 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.161 4.161 25 C -0.130 4.130 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.150 0.850 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.149 0.851 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.138 0.862 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.823 1.710 8.926 14.132 hybrid contribution 0.667 0.389 -2.029 2.171 sum -10.156 2.098 6.897 12.454 Atomic orbital electron populations 1.21460 0.96191 0.98697 1.00904 1.21973 0.94938 0.97929 1.00747 1.19582 0.92088 0.92403 0.87762 0.96251 1.22124 0.92278 1.47975 0.94575 0.89732 1.25522 0.95143 0.95030 1.00612 1.70001 1.10832 1.51911 1.24511 0.86433 0.80727 0.78737 0.81375 1.19916 1.21394 1.18665 1.62178 1.46781 1.06178 1.08166 1.21605 0.91741 0.92120 1.01412 1.24101 0.87938 0.80492 0.77605 1.90642 1.50629 1.45569 1.52731 1.86483 1.44280 1.30905 1.67138 1.23462 0.83587 1.04554 0.94640 1.21117 0.95832 0.93141 0.93635 1.19679 0.95579 0.95198 0.96368 1.21140 0.97170 0.96701 0.97560 1.21348 0.99688 0.92928 1.00819 1.21331 0.95297 1.00451 0.97370 1.21273 0.99969 0.95557 0.99292 1.21337 0.99414 0.94023 0.98208 0.91930 0.96103 0.94350 0.96515 0.89649 0.92818 0.84006 0.91269 0.93397 0.91454 0.84960 0.93015 0.88804 0.85082 0.83913 0.84232 0.86157 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 8.75 71.98 0.63 -4.09 16 2 C -0.12 -5.28 5.14 30.59 0.16 -5.12 16 3 C 0.19 8.63 0.71 44.17 0.03 8.66 16 4 H 0.02 0.97 3.57 -2.39 -0.01 0.96 16 5 C -0.53 -27.33 6.82 25.60 0.17 -27.16 16 6 H 0.09 4.55 3.68 -2.91 -0.01 4.54 16 7 C 0.04 2.00 5.47 84.65 0.46 2.47 16 8 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 9 Si 0.90 44.69 27.31 68.60 1.87 46.57 16 10 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 12 H -0.26 -13.12 6.36 99.48 0.63 -12.49 16 13 N -0.51 -19.34 3.47 -884.48 -3.07 -22.41 16 14 C 0.06 2.02 5.49 85.55 0.47 2.49 16 15 C 0.46 16.06 7.31 71.23 0.52 16.58 16 16 O -0.51 -20.45 13.23 21.95 0.29 -20.16 16 17 O -0.37 -11.23 10.57 -51.41 -0.54 -11.78 16 18 C 0.03 0.71 10.56 113.37 1.20 1.91 16 19 C 0.09 3.13 4.78 85.56 0.41 3.54 16 20 C -0.07 -2.34 3.60 -19.86 -0.07 -2.42 16 21 C -0.11 -3.13 9.73 22.27 0.22 -2.92 16 22 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 23 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 24 C -0.14 -4.63 9.93 22.27 0.22 -4.40 16 25 C -0.11 -4.20 6.59 22.27 0.15 -4.05 16 26 H 0.06 2.54 7.35 -2.38 -0.02 2.53 16 27 H 0.02 0.88 7.71 -2.38 -0.02 0.87 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 3.67 3.30 -2.38 -0.01 3.66 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.14 3.55 7.76 -2.38 -0.02 3.53 16 33 H 0.07 2.54 7.94 -2.38 -0.02 2.52 16 34 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 35 H 0.07 1.45 8.13 -2.38 -0.02 1.43 16 36 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.05 2.13 5.16 -2.39 -0.01 2.11 16 38 H 0.09 2.63 7.77 -2.39 -0.02 2.61 16 39 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 40 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 42 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.11 4.79 5.63 -2.91 -0.02 4.77 16 Total: -1.00 -65.24 335.19 4.80 -60.44 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.94 Total: 22.98 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 5.01 Total: -20.84 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -2.77 Total: -77.21 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.25 Total: -31.94 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.87 Total: 46.57 kcal Total: -65.24 4.80 -60.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.651 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds