Wall clock time and date at job start Tue Mar 31 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47313 * 2 1 4 4 H 1.09005 * 109.46647 * 56.40102 * 3 2 1 5 5 C 1.50705 * 109.47226 * 176.39244 * 3 2 1 6 6 H 1.08005 * 119.99468 * 119.72189 * 5 3 2 7 7 C 1.37875 * 120.00146 * 300.00726 * 5 3 2 8 8 N 1.31518 * 119.99819 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 120.00033 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47472 * 90.00450 * 9 7 5 11 11 H 1.48502 * 109.46916 * 210.00360 * 9 7 5 12 12 H 1.48496 * 109.47384 * 330.00169 * 9 7 5 13 13 N 1.46899 * 109.47342 * 296.39841 * 3 2 1 14 14 C 1.46896 * 110.99618 * 295.92912 * 13 3 2 15 15 C 1.46902 * 110.99876 * 171.97547 * 13 3 2 16 16 C 1.50698 * 109.46741 * 195.92087 * 15 13 3 17 17 C 1.38392 * 119.92593 * 269.72543 * 16 15 13 18 18 C 1.38349 * 120.29838 * 179.72680 * 17 16 15 19 19 C 1.37968 * 120.15417 * 0.54968 * 18 17 16 20 20 C 1.39608 * 119.84541 * 359.72785 * 19 18 17 21 21 C 1.47721 * 120.15120 * 180.02562 * 20 19 18 22 22 O 1.21469 * 120.00135 * 179.97438 * 21 20 19 23 23 O 1.34714 * 119.99847 * 359.97438 * 21 20 19 24 24 C 1.45202 * 117.00163 * 179.97438 * 23 21 20 25 25 C 1.37922 * 119.92620 * 90.00424 * 16 15 13 26 26 H 1.09002 * 109.46823 * 295.12909 * 1 2 3 27 27 H 1.08998 * 109.47078 * 55.12362 * 1 2 3 28 28 H 1.08993 * 109.47001 * 175.13022 * 1 2 3 29 29 H 1.09005 * 109.46777 * 240.00168 * 2 1 3 30 30 H 1.08998 * 109.47344 * 120.00181 * 2 1 3 31 31 H 0.97000 * 120.00040 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47549 * 60.00485 * 14 13 3 33 33 H 1.08999 * 109.46947 * 179.97438 * 14 13 3 34 34 H 1.09000 * 109.47502 * 299.99708 * 14 13 3 35 35 H 1.08998 * 109.47351 * 315.92110 * 15 13 3 36 36 H 1.08998 * 109.46794 * 75.92332 * 15 13 3 37 37 H 1.07990 * 119.84966 * 0.02562 * 17 16 15 38 38 H 1.08008 * 119.92150 * 180.25801 * 18 17 16 39 39 H 1.07992 * 120.07369 * 179.75157 * 19 18 17 40 40 H 1.08999 * 109.47160 * 179.97438 * 24 23 21 41 41 H 1.08999 * 109.46950 * 300.00043 * 24 23 21 42 42 H 1.08997 * 109.46671 * 59.99576 * 24 23 21 43 43 H 1.08008 * 120.07253 * 359.97310 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6249 1.9746 0.8560 5 6 3.5444 1.4434 0.0894 6 1 4.1319 1.8903 -0.6990 7 6 4.1709 0.8685 1.1747 8 7 5.4838 0.8689 1.2525 9 14 3.1550 0.0891 2.5348 10 1 2.9260 -1.3445 2.2222 11 1 3.8826 0.2045 3.8242 12 1 1.8488 0.7877 2.6393 13 7 1.6227 2.1095 -1.2405 14 6 2.2425 1.4768 -2.4125 15 6 1.9281 3.5456 -1.1945 16 6 1.1571 4.2580 -2.2757 17 6 1.7175 4.4200 -3.5307 18 6 1.0143 5.0678 -4.5307 19 6 -0.2471 5.5669 -4.2793 20 6 -0.8161 5.4120 -3.0138 21 6 -2.1664 5.9432 -2.7373 22 8 -2.6590 5.8065 -1.6354 23 8 -2.8516 6.5792 -3.7072 24 6 -4.1729 7.0745 -3.3647 25 6 -0.1030 4.7521 -2.0107 26 1 -0.3633 0.4364 0.9304 27 1 -0.3633 0.5876 -0.8431 28 1 -0.3633 -1.0239 -0.0872 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 5.9245 0.4648 2.0162 32 1 1.9433 0.4298 -2.4610 33 1 1.9164 1.9896 -3.3172 34 1 3.3274 1.5411 -2.3290 35 1 1.6441 3.9465 -0.2215 36 1 2.9964 3.6951 -1.3513 37 1 2.7061 4.0349 -3.7318 38 1 1.4558 5.1872 -5.5092 39 1 -0.7932 6.0758 -5.0596 40 1 -4.6134 7.5648 -4.2328 41 1 -4.8050 6.2412 -3.0578 42 1 -4.0918 7.7897 -2.5461 43 1 -0.5375 4.6285 -1.0296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:05 Heat of formation + Delta-G solvation = -50.469227 kcal Electronic energy + Delta-G solvation = -23379.108582 eV Core-core repulsion = 20003.764111 eV Total energy + Delta-G solvation = -3375.344471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60281 -39.09717 -37.27877 -36.47457 -33.39441 -32.00136 -31.29207 -30.81187 -27.95823 -27.31923 -26.50933 -24.06559 -23.85694 -22.39354 -21.35604 -20.47165 -19.22827 -17.59039 -17.19193 -16.81911 -16.45246 -16.00603 -15.55809 -14.97336 -14.62897 -14.40040 -13.76932 -13.63484 -13.59826 -13.39955 -12.81822 -12.71606 -12.48541 -12.29914 -12.21257 -11.92868 -11.70497 -11.59905 -11.18072 -11.05430 -11.02276 -10.96281 -10.71481 -10.53773 -10.37083 -10.12554 -9.69981 -9.59392 -9.25791 -8.96593 -8.72745 -8.57178 -7.22929 -6.15132 -4.16204 0.73871 1.43599 2.53839 2.56863 3.24648 3.36205 3.38102 3.82147 4.35310 4.62733 4.84616 4.89713 4.90445 4.97982 5.09799 5.17822 5.22248 5.31553 5.43118 5.47842 5.71489 5.95062 5.98821 6.03017 6.07101 6.13792 6.18243 6.24339 6.31430 6.41082 6.43279 6.48232 6.67917 6.69234 6.74658 6.83958 6.91719 6.93807 7.09623 7.21967 7.51366 7.66330 8.01136 8.08276 8.40664 8.85912 9.48506 10.97478 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.003881 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.078542 B = 7212.472185 C = 7801.504291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.180 3.820 4 H 0.039 0.961 5 C -0.546 4.546 6 H 0.077 0.923 7 C 0.075 3.925 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.263 1.263 13 N -0.524 5.524 14 C 0.026 3.974 15 C 0.097 3.903 16 C -0.070 4.070 17 C -0.075 4.075 18 C -0.136 4.136 19 C -0.073 4.073 20 C -0.134 4.134 21 C 0.510 3.490 22 O -0.506 6.506 23 O -0.358 6.358 24 C 0.037 3.963 25 C -0.036 4.036 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.317 9.546 -11.599 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C 0.073 3.927 4 H 0.057 0.943 5 C -0.585 4.585 6 H 0.095 0.905 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.188 1.188 13 N -0.247 5.247 14 C -0.123 4.123 15 C -0.031 4.031 16 C -0.071 4.071 17 C -0.093 4.093 18 C -0.154 4.154 19 C -0.091 4.091 20 C -0.135 4.135 21 C 0.355 3.645 22 O -0.394 6.394 23 O -0.274 6.274 24 C -0.057 4.057 25 C -0.054 4.054 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.854 9.410 -11.191 20.142 hybrid contribution 0.352 -0.459 0.965 1.125 sum -13.502 8.950 -10.226 19.157 Atomic orbital electron populations 1.21749 0.97340 0.99561 1.01617 1.21916 0.94072 0.99178 1.00646 1.19762 0.94413 0.90594 0.87948 0.94315 1.21614 0.90401 1.38902 1.07561 0.90491 1.24970 0.94693 0.95282 0.97852 1.69911 1.08118 1.44841 1.30643 0.86861 0.80519 0.79923 0.81013 1.20532 1.22600 1.18820 1.62391 1.57653 1.00531 1.04120 1.22329 0.98483 0.99123 0.92347 1.20899 0.97108 0.89442 0.95678 1.20073 0.94262 0.97089 0.95632 1.21468 0.99915 0.95502 0.92447 1.21088 0.94847 0.99871 0.99603 1.21326 0.95186 0.97255 0.95332 1.19025 0.91994 1.06133 0.96376 1.21338 0.86016 0.74923 0.82194 1.90840 1.69560 1.55039 1.24004 1.86541 1.30925 1.67946 1.42032 1.23255 0.80595 0.99440 1.02415 1.21168 0.92892 0.92651 0.98718 0.94044 0.91713 0.94803 0.92223 0.93564 0.92630 0.92158 0.93624 0.94099 0.90394 0.92815 0.85394 0.85446 0.85026 0.88112 0.91839 0.91883 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.85 37.16 0.37 -2.31 16 2 C -0.12 -2.58 4.76 -26.73 -0.13 -2.70 16 3 C 0.18 4.07 1.31 -68.86 -0.09 3.98 16 4 H 0.04 0.93 6.97 -51.93 -0.36 0.56 16 5 C -0.55 -14.42 7.84 -34.44 -0.27 -14.69 16 6 H 0.08 2.19 6.13 -52.48 -0.32 1.87 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -26.71 13.96 55.43 0.77 -25.93 16 9 Si 0.89 21.64 24.40 -169.99 -4.15 17.49 16 10 H -0.28 -6.67 6.84 56.52 0.39 -6.29 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.19 6.53 56.52 0.37 -5.83 16 13 N -0.52 -10.19 3.98 -237.73 -0.95 -11.14 16 14 C 0.03 0.47 8.69 60.06 0.52 0.99 16 15 C 0.10 1.73 4.66 -4.98 -0.02 1.70 16 16 C -0.07 -1.06 5.04 -104.68 -0.53 -1.58 16 17 C -0.07 -0.97 8.12 -39.48 -0.32 -1.29 16 18 C -0.14 -1.50 10.03 -39.64 -0.40 -1.90 16 19 C -0.07 -0.83 9.62 -39.17 -0.38 -1.21 16 20 C -0.13 -1.83 5.87 -104.99 -0.62 -2.45 16 21 C 0.51 7.11 7.90 34.61 0.27 7.38 16 22 O -0.51 -8.33 16.14 -19.24 -0.31 -8.64 16 23 O -0.36 -4.08 9.82 -40.53 -0.40 -4.48 16 24 C 0.04 0.30 10.57 101.05 1.07 1.37 16 25 C -0.04 -0.53 9.24 -39.17 -0.36 -0.90 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.17 7.57 -51.93 -0.39 0.77 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.26 6.33 -51.93 -0.33 0.93 16 30 H 0.05 1.06 3.22 -51.93 -0.17 0.89 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 1.10 6.33 -51.93 -0.33 0.77 16 33 H 0.05 0.72 6.05 -51.93 -0.31 0.41 16 34 H 0.04 0.83 6.22 -51.93 -0.32 0.51 16 35 H 0.08 1.42 7.78 -51.93 -0.40 1.01 16 36 H 0.05 1.02 7.36 -51.93 -0.38 0.64 16 37 H 0.13 1.57 7.89 -52.49 -0.41 1.15 16 38 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.13 1.22 7.61 -52.49 -0.40 0.82 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.14 2.14 7.65 -52.48 -0.40 1.74 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -30.55 341.90 -7.12 -37.67 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.26 Total: 1.48 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.98 Total: -11.61 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.17 Total: -37.07 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.71 Total: -13.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.15 Total: 17.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.55 -7.12 -37.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.800 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds