Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47313 * 2 1 4 4 H 1.09005 * 109.46647 * 56.40102 * 3 2 1 5 5 C 1.50705 * 109.47226 * 176.39244 * 3 2 1 6 6 H 1.08005 * 119.99468 * 119.72189 * 5 3 2 7 7 C 1.37875 * 120.00146 * 300.00726 * 5 3 2 8 8 N 1.31518 * 119.99819 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 120.00033 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47472 * 90.00450 * 9 7 5 11 11 H 1.48502 * 109.46916 * 210.00360 * 9 7 5 12 12 H 1.48496 * 109.47384 * 330.00169 * 9 7 5 13 13 N 1.46899 * 109.47342 * 296.39841 * 3 2 1 14 14 C 1.46896 * 110.99618 * 295.92912 * 13 3 2 15 15 C 1.46902 * 110.99876 * 171.97547 * 13 3 2 16 16 C 1.50698 * 109.46741 * 195.92087 * 15 13 3 17 17 C 1.38392 * 119.92593 * 269.72543 * 16 15 13 18 18 C 1.38349 * 120.29838 * 179.72680 * 17 16 15 19 19 C 1.37968 * 120.15417 * 0.54968 * 18 17 16 20 20 C 1.39608 * 119.84541 * 359.72785 * 19 18 17 21 21 C 1.47721 * 120.15120 * 180.02562 * 20 19 18 22 22 O 1.21469 * 120.00135 * 179.97438 * 21 20 19 23 23 O 1.34714 * 119.99847 * 359.97438 * 21 20 19 24 24 C 1.45202 * 117.00163 * 179.97438 * 23 21 20 25 25 C 1.37922 * 119.92620 * 90.00424 * 16 15 13 26 26 H 1.09002 * 109.46823 * 295.12909 * 1 2 3 27 27 H 1.08998 * 109.47078 * 55.12362 * 1 2 3 28 28 H 1.08993 * 109.47001 * 175.13022 * 1 2 3 29 29 H 1.09005 * 109.46777 * 240.00168 * 2 1 3 30 30 H 1.08998 * 109.47344 * 120.00181 * 2 1 3 31 31 H 0.97000 * 120.00040 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47549 * 60.00485 * 14 13 3 33 33 H 1.08999 * 109.46947 * 179.97438 * 14 13 3 34 34 H 1.09000 * 109.47502 * 299.99708 * 14 13 3 35 35 H 1.08998 * 109.47351 * 315.92110 * 15 13 3 36 36 H 1.08998 * 109.46794 * 75.92332 * 15 13 3 37 37 H 1.07990 * 119.84966 * 0.02562 * 17 16 15 38 38 H 1.08008 * 119.92150 * 180.25801 * 18 17 16 39 39 H 1.07992 * 120.07369 * 179.75157 * 19 18 17 40 40 H 1.08999 * 109.47160 * 179.97438 * 24 23 21 41 41 H 1.08999 * 109.46950 * 300.00043 * 24 23 21 42 42 H 1.08997 * 109.46671 * 59.99576 * 24 23 21 43 43 H 1.08008 * 120.07253 * 359.97310 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6249 1.9746 0.8560 5 6 3.5444 1.4434 0.0894 6 1 4.1319 1.8903 -0.6990 7 6 4.1709 0.8685 1.1747 8 7 5.4838 0.8689 1.2525 9 14 3.1550 0.0891 2.5348 10 1 2.9260 -1.3445 2.2222 11 1 3.8826 0.2045 3.8242 12 1 1.8488 0.7877 2.6393 13 7 1.6227 2.1095 -1.2405 14 6 2.2425 1.4768 -2.4125 15 6 1.9281 3.5456 -1.1945 16 6 1.1571 4.2580 -2.2757 17 6 1.7175 4.4200 -3.5307 18 6 1.0143 5.0678 -4.5307 19 6 -0.2471 5.5669 -4.2793 20 6 -0.8161 5.4120 -3.0138 21 6 -2.1664 5.9432 -2.7373 22 8 -2.6590 5.8065 -1.6354 23 8 -2.8516 6.5792 -3.7072 24 6 -4.1729 7.0745 -3.3647 25 6 -0.1030 4.7521 -2.0107 26 1 -0.3633 0.4364 0.9304 27 1 -0.3633 0.5876 -0.8431 28 1 -0.3633 -1.0239 -0.0872 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 5.9245 0.4648 2.0162 32 1 1.9433 0.4298 -2.4610 33 1 1.9164 1.9896 -3.3172 34 1 3.3274 1.5411 -2.3290 35 1 1.6441 3.9465 -0.2215 36 1 2.9964 3.6951 -1.3513 37 1 2.7061 4.0349 -3.7318 38 1 1.4558 5.1872 -5.5092 39 1 -0.7932 6.0758 -5.0596 40 1 -4.6134 7.5648 -4.2328 41 1 -4.8050 6.2412 -3.0578 42 1 -4.0918 7.7897 -2.5461 43 1 -0.5375 4.6285 -1.0296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = -68.955284 kcal Electronic energy + Delta-G solvation = -23379.910197 eV Core-core repulsion = 20003.764111 eV Total energy + Delta-G solvation = -3376.146086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62443 -40.26230 -38.80839 -37.48825 -35.01041 -33.92934 -32.36096 -32.07184 -29.21481 -28.68563 -27.90602 -25.55904 -25.02353 -23.96533 -22.47880 -21.57347 -21.02393 -18.91385 -18.58515 -18.14229 -17.40498 -17.32056 -16.98185 -16.27632 -16.09824 -15.87017 -15.15458 -14.96199 -14.60446 -14.51934 -14.48670 -14.22547 -13.86826 -13.61714 -13.48347 -13.24325 -13.05983 -12.83300 -12.80400 -12.63324 -12.44946 -12.17130 -12.10857 -11.82232 -11.80478 -11.62141 -11.43373 -11.41115 -11.15240 -10.69284 -9.99600 -9.79604 -8.91773 -8.31905 -6.35307 -0.30345 0.40316 1.28874 1.35148 1.44535 1.48976 1.66873 2.30065 2.75767 3.04005 3.44684 3.69728 3.83643 3.97820 4.18363 4.26005 4.31711 4.34501 4.34714 4.39870 4.41462 4.56209 4.64318 4.65738 4.73127 4.85522 4.88677 4.92009 5.03325 5.05686 5.10874 5.21596 5.23725 5.25241 5.31169 5.43557 5.45279 5.51508 5.57989 5.65740 5.90557 6.14183 6.36775 6.45562 6.65734 6.72704 7.33114 8.84031 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.003881 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.078542 B = 7212.472185 C = 7801.504291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.183 3.817 4 H 0.027 0.973 5 C -0.536 4.536 6 H 0.044 0.956 7 C 0.020 3.980 8 N -0.946 5.946 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.302 1.302 12 H -0.250 1.250 13 N -0.518 5.518 14 C 0.033 3.967 15 C 0.102 3.898 16 C -0.084 4.084 17 C -0.078 4.078 18 C -0.122 4.122 19 C -0.057 4.057 20 C -0.145 4.145 21 C 0.512 3.488 22 O -0.541 6.541 23 O -0.353 6.353 24 C 0.028 3.972 25 C -0.048 4.048 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.013 0.987 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.139 0.861 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 10.000 -13.851 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.075 3.925 4 H 0.045 0.955 5 C -0.575 4.575 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.193 1.193 11 H -0.230 1.230 12 H -0.174 1.174 13 N -0.241 5.241 14 C -0.115 4.115 15 C -0.026 4.026 16 C -0.084 4.084 17 C -0.096 4.096 18 C -0.139 4.139 19 C -0.075 4.075 20 C -0.146 4.146 21 C 0.359 3.641 22 O -0.432 6.432 23 O -0.269 6.269 24 C -0.064 4.064 25 C -0.067 4.067 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.152 0.848 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.157 0.843 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.228 9.878 -13.478 23.294 hybrid contribution 1.062 -0.465 1.513 1.906 sum -15.166 9.413 -11.966 21.489 Atomic orbital electron populations 1.21656 0.94632 1.01249 1.01809 1.21845 0.96444 0.97498 1.00052 1.19634 0.91620 0.92022 0.89223 0.95474 1.21882 0.92484 1.37020 1.06110 0.93743 1.25734 0.95506 0.96255 1.00349 1.70047 1.09918 1.46902 1.31713 0.85952 0.79479 0.79688 0.77913 1.19349 1.23028 1.17368 1.62416 1.57154 1.01276 1.03209 1.22298 0.96640 0.99622 0.92966 1.20798 0.96433 0.88819 0.96576 1.19730 0.94419 0.98485 0.95780 1.21603 1.00317 0.95697 0.91989 1.21456 0.94228 0.97825 1.00418 1.21679 0.95191 0.95870 0.94741 1.19102 0.92093 1.06324 0.97046 1.21426 0.86146 0.74532 0.82023 1.90824 1.70392 1.56552 1.25459 1.86522 1.32148 1.67223 1.40972 1.23602 0.79052 0.99473 1.04319 1.21012 0.93152 0.93910 0.98661 0.93988 0.91406 0.92357 0.92179 0.94799 0.92695 0.91914 0.90743 0.96818 0.91686 0.94830 0.84845 0.81642 0.82056 0.84336 0.92087 0.92038 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.85 71.98 0.71 -4.00 16 2 C -0.12 -5.04 4.76 30.59 0.15 -4.89 16 3 C 0.18 8.37 1.31 44.17 0.06 8.42 16 4 H 0.03 1.31 6.97 -2.38 -0.02 1.30 16 5 C -0.54 -29.27 7.84 25.60 0.20 -29.07 16 6 H 0.04 2.67 6.13 -2.91 -0.02 2.65 16 7 C 0.02 1.12 5.45 84.65 0.46 1.59 16 8 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 9 Si 0.94 45.10 24.40 68.60 1.67 46.77 16 10 H -0.27 -12.25 6.84 99.48 0.68 -11.57 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 12 H -0.25 -11.28 6.53 99.48 0.65 -10.63 16 13 N -0.52 -20.31 3.98 -906.05 -3.61 -23.91 16 14 C 0.03 1.20 8.69 127.69 1.11 2.31 16 15 C 0.10 3.76 4.66 85.56 0.40 4.16 16 16 C -0.08 -2.50 5.04 -19.90 -0.10 -2.60 16 17 C -0.08 -1.86 8.12 22.33 0.18 -1.68 16 18 C -0.12 -2.20 10.03 22.23 0.22 -1.98 16 19 C -0.06 -1.08 9.62 22.54 0.22 -0.87 16 20 C -0.14 -3.71 5.87 -20.10 -0.12 -3.83 16 21 C 0.51 13.63 7.90 70.33 0.56 14.19 16 22 O -0.54 -17.78 16.14 19.94 0.32 -17.46 16 23 O -0.35 -7.16 9.82 -56.24 -0.55 -7.71 16 24 C 0.03 0.40 10.57 113.37 1.20 1.59 16 25 C -0.05 -1.45 9.24 22.54 0.21 -1.24 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 2.30 7.57 -2.39 -0.02 2.28 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 2.47 6.33 -2.38 -0.02 2.46 16 30 H 0.03 1.50 3.22 -2.39 -0.01 1.49 16 31 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.06 2.24 6.33 -2.39 -0.02 2.22 16 33 H 0.07 2.26 6.05 -2.39 -0.01 2.25 16 34 H 0.01 0.56 6.22 -2.39 -0.01 0.55 16 35 H 0.06 2.51 7.78 -2.39 -0.02 2.49 16 36 H 0.03 1.35 7.36 -2.39 -0.02 1.34 16 37 H 0.13 3.05 7.89 -2.92 -0.02 3.03 16 38 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.16 2.17 7.61 -2.91 -0.02 2.15 16 40 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.12 3.88 7.65 -2.91 -0.02 3.86 16 Total: -1.00 -68.57 341.90 4.50 -64.06 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.92 Total: 14.15 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 5.45 Total: -17.90 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -3.31 Total: -81.91 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.23 Total: -25.17 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.67 Total: 46.77 kcal Total: -68.57 4.50 -64.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.893 kcal (2) G-P(sol) polarization free energy of solvation -68.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds