Wall clock time and date at job start Tue Mar 31 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47327 * 2 1 4 4 H 1.08999 * 109.47172 * 183.58918 * 3 2 1 5 5 C 1.50704 * 109.47026 * 63.58968 * 3 2 1 6 6 H 1.08000 * 120.00080 * 240.00073 * 5 3 2 7 7 C 1.37882 * 119.99785 * 60.00358 * 5 3 2 8 8 N 1.31517 * 119.99653 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.46898 * 270.00430 * 9 7 5 11 11 H 1.48501 * 109.46746 * 30.00177 * 9 7 5 12 12 H 1.48502 * 109.46996 * 150.00241 * 9 7 5 13 13 N 1.46896 * 109.47069 * 303.59227 * 3 2 1 14 14 C 1.46898 * 111.00044 * 174.29445 * 13 3 2 15 15 C 1.46904 * 110.99689 * 298.24996 * 13 3 2 16 16 C 1.50705 * 109.46729 * 165.10473 * 15 13 3 17 17 C 1.38390 * 119.92410 * 269.72218 * 16 15 13 18 18 C 1.38348 * 120.29978 * 179.72929 * 17 16 15 19 19 C 1.37959 * 120.15133 * 0.54630 * 18 17 16 20 20 C 1.39610 * 119.85017 * 359.73378 * 19 18 17 21 21 C 1.47729 * 120.15061 * 180.02562 * 20 19 18 22 22 O 1.21470 * 119.99629 * 179.97438 * 21 20 19 23 23 O 1.34706 * 119.99907 * 359.97233 * 21 20 19 24 24 C 1.45197 * 116.99826 * 180.02562 * 23 21 20 25 25 C 1.37922 * 119.92523 * 90.00383 * 16 15 13 26 26 H 1.09005 * 109.46975 * 304.11880 * 1 2 3 27 27 H 1.09005 * 109.46920 * 64.11278 * 1 2 3 28 28 H 1.08998 * 109.47611 * 184.11650 * 1 2 3 29 29 H 1.08992 * 109.47458 * 239.99885 * 2 1 3 30 30 H 1.09007 * 109.47290 * 119.99801 * 2 1 3 31 31 H 0.96996 * 119.99285 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46954 * 60.00245 * 14 13 3 33 33 H 1.08997 * 109.47336 * 179.97438 * 14 13 3 34 34 H 1.08997 * 109.47545 * 300.00008 * 14 13 3 35 35 H 1.09004 * 109.46868 * 285.09896 * 15 13 3 36 36 H 1.08998 * 109.47761 * 45.10476 * 15 13 3 37 37 H 1.07999 * 119.84336 * 0.02562 * 17 16 15 38 38 H 1.08000 * 119.92144 * 180.25745 * 18 17 16 39 39 H 1.08003 * 120.07902 * 179.74800 * 19 18 17 40 40 H 1.09001 * 109.47164 * 180.02562 * 24 23 21 41 41 H 1.09001 * 109.47256 * 299.99793 * 24 23 21 42 42 H 1.09000 * 109.47337 * 60.00048 * 24 23 21 43 43 H 1.08007 * 120.07768 * 359.96839 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1281 1.4432 -0.0643 5 6 1.6116 2.1268 1.2726 6 1 0.9865 3.0064 1.2287 7 6 2.0179 1.6299 2.4929 8 7 1.6444 2.2273 3.6034 9 14 3.0986 0.1081 2.5688 10 1 2.2430 -1.1035 2.6398 11 1 3.9485 0.0434 1.3528 12 1 3.9633 0.1748 3.7743 13 7 1.4808 2.1596 -1.1537 14 6 1.8395 3.5835 -1.1128 15 6 1.9124 1.5439 -2.4157 16 6 1.0523 2.0541 -3.5433 17 6 -0.1075 1.3813 -3.8858 18 6 -0.9057 1.8459 -4.9159 19 6 -0.5439 2.9781 -5.6162 20 6 0.6279 3.6585 -5.2798 21 6 1.0213 4.8719 -6.0250 22 8 2.0412 5.4619 -5.7296 23 8 0.2492 5.3238 -7.0320 24 6 0.6977 6.5210 -7.7203 25 6 1.4260 3.1872 -4.2352 26 1 -0.3633 0.5765 0.8508 27 1 -0.3633 0.4487 -0.9246 28 1 -0.3634 -1.0250 0.0738 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.9299 1.8775 4.4619 32 1 2.9246 3.6855 -1.1304 33 1 1.4133 4.0906 -1.9784 34 1 1.4473 4.0310 -0.1996 35 1 2.9539 1.8014 -2.6081 36 1 1.8130 0.4608 -2.3444 37 1 -0.3932 0.4922 -3.3433 38 1 -1.8116 1.3184 -5.1753 39 1 -1.1657 3.3374 -6.4228 40 1 -0.0132 6.7761 -8.5062 41 1 0.7644 7.3451 -7.0099 42 1 1.6781 6.3410 -8.1611 43 1 2.3335 3.7091 -3.9695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:08 Heat of formation + Delta-G solvation = -45.580725 kcal Electronic energy + Delta-G solvation = -23462.451622 eV Core-core repulsion = 20087.319133 eV Total energy + Delta-G solvation = -3375.132489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65919 -39.18271 -37.28941 -36.51872 -33.45644 -31.74267 -31.55864 -30.90141 -28.08453 -27.15383 -26.41607 -24.26132 -23.74593 -22.39504 -21.68696 -20.59326 -19.17640 -17.64965 -17.21197 -16.49232 -16.46017 -16.08342 -15.56493 -14.98306 -14.57662 -14.51876 -14.00502 -13.68299 -13.60199 -13.39909 -13.15346 -12.72440 -12.39824 -12.38969 -12.29033 -12.16036 -11.66675 -11.38074 -11.25739 -10.99679 -10.99046 -10.91698 -10.62391 -10.60656 -10.35148 -10.07713 -10.02864 -9.37480 -9.03170 -8.97275 -8.72719 -8.55333 -7.37980 -6.08084 -4.06115 0.69346 1.35352 2.49473 2.52813 3.24944 3.34782 3.36890 3.75571 4.38145 4.57989 4.76017 4.85447 4.87504 4.95711 4.98610 5.12510 5.24109 5.26525 5.32294 5.40839 5.63124 5.80217 5.92391 5.97294 6.03191 6.09726 6.12898 6.22974 6.24320 6.30878 6.36959 6.41120 6.64557 6.67077 6.77517 6.85473 6.95368 6.98546 7.13140 7.41588 7.56559 7.61541 7.89839 8.04286 8.62889 8.98540 9.53716 11.04395 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.003719 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.279782 B = 7527.797117 C = 8073.299095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.185 3.815 4 H -0.002 1.002 5 C -0.501 4.501 6 H 0.084 0.916 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.882 3.118 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.298 1.298 13 N -0.516 5.516 14 C 0.033 3.967 15 C 0.079 3.921 16 C -0.070 4.070 17 C -0.061 4.061 18 C -0.135 4.135 19 C -0.070 4.070 20 C -0.133 4.133 21 C 0.510 3.490 22 O -0.507 6.507 23 O -0.357 6.357 24 C 0.037 3.963 25 C -0.048 4.048 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.022 0.978 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.014 0.986 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 0.759 -20.889 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.078 3.922 4 H 0.015 0.985 5 C -0.539 4.539 6 H 0.102 0.898 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.225 1.225 13 N -0.240 5.240 14 C -0.115 4.115 15 C -0.049 4.049 16 C -0.071 4.071 17 C -0.080 4.080 18 C -0.153 4.153 19 C -0.089 4.089 20 C -0.134 4.134 21 C 0.355 3.645 22 O -0.395 6.395 23 O -0.273 6.273 24 C -0.057 4.057 25 C -0.067 4.067 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.048 0.936 -20.576 20.992 hybrid contribution 1.586 -0.579 0.120 1.693 sum -2.462 0.357 -20.457 20.607 Atomic orbital electron populations 1.21477 0.95247 0.98456 1.03071 1.21907 0.97654 0.98066 0.98327 1.19760 0.92278 0.90627 0.89579 0.98469 1.20919 1.31941 1.13384 0.87619 0.89809 1.24895 0.95674 0.96764 0.95657 1.69876 1.45646 1.40543 0.97582 0.86945 0.80825 0.84020 0.76986 1.20415 1.19446 1.22531 1.61965 1.59466 1.02454 1.00153 1.22330 0.97559 0.89397 1.02206 1.21188 0.94727 1.00001 0.88944 1.19897 0.96269 0.94670 0.96244 1.21391 0.92689 0.99153 0.94731 1.21125 1.00361 0.96978 0.96818 1.21352 0.94617 0.94316 0.98601 1.18987 0.99004 0.95625 0.99830 1.21323 0.81078 0.84162 0.77899 1.90839 1.25209 1.57703 1.65796 1.86538 1.51631 1.43755 1.45424 1.23265 1.01197 0.84768 0.96481 1.21197 0.98752 0.94576 0.92134 0.91116 0.92841 0.95881 0.94840 0.93445 0.92636 0.96758 0.93429 0.89777 0.94611 0.89625 0.85093 0.85280 0.84918 0.88052 0.91781 0.91890 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.51 37.16 0.35 -2.10 16 2 C -0.12 -2.55 4.82 -26.73 -0.13 -2.68 16 3 C 0.18 4.21 1.35 -68.86 -0.09 4.11 16 4 H 0.00 -0.05 7.20 -51.93 -0.37 -0.43 16 5 C -0.50 -13.44 7.35 -34.44 -0.25 -13.69 16 6 H 0.08 2.46 6.52 -52.49 -0.34 2.12 16 7 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 8 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.88 21.58 24.40 -169.99 -4.15 17.43 16 10 H -0.28 -6.61 6.84 56.52 0.39 -6.23 16 11 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 12 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 13 N -0.52 -10.19 3.74 -237.72 -0.89 -11.08 16 14 C 0.03 0.65 8.96 60.06 0.54 1.19 16 15 C 0.08 1.29 4.99 -4.97 -0.02 1.27 16 16 C -0.07 -1.01 5.02 -104.68 -0.53 -1.54 16 17 C -0.06 -0.76 9.69 -39.49 -0.38 -1.15 16 18 C -0.13 -1.44 10.03 -39.64 -0.40 -1.84 16 19 C -0.07 -0.78 9.62 -39.17 -0.38 -1.16 16 20 C -0.13 -1.77 5.87 -104.98 -0.62 -2.39 16 21 C 0.51 6.97 7.90 34.61 0.27 7.24 16 22 O -0.51 -8.18 16.14 -19.24 -0.31 -8.49 16 23 O -0.36 -4.01 9.82 -40.51 -0.40 -4.41 16 24 C 0.04 0.29 10.56 101.05 1.07 1.36 16 25 C -0.05 -0.69 7.61 -39.17 -0.30 -0.99 16 26 H 0.07 1.59 7.20 -51.93 -0.37 1.22 16 27 H 0.05 0.97 7.65 -51.93 -0.40 0.57 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.61 6.33 -51.93 -0.33 0.28 16 30 H 0.05 1.07 3.22 -51.93 -0.17 0.90 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.84 5.99 -51.93 -0.31 0.53 16 34 H 0.08 1.83 6.14 -51.93 -0.32 1.51 16 35 H 0.04 0.58 8.01 -51.93 -0.42 0.16 16 36 H 0.09 1.33 5.74 -51.93 -0.30 1.03 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.20 7.61 -52.48 -0.40 0.80 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.13 2.01 7.49 -52.48 -0.39 1.61 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -30.87 341.50 -7.05 -37.92 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.26 Total: 0.01 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.96 Total: -10.45 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.12 Total: -37.17 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.71 Total: -12.89 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.15 Total: 17.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.87 -7.05 -37.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.659 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds