Wall clock time and date at job start Tue Mar 31 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47327 * 2 1 4 4 H 1.08999 * 109.47172 * 183.58918 * 3 2 1 5 5 C 1.50704 * 109.47026 * 63.58968 * 3 2 1 6 6 H 1.08000 * 120.00080 * 240.00073 * 5 3 2 7 7 C 1.37882 * 119.99785 * 60.00358 * 5 3 2 8 8 N 1.31517 * 119.99653 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.46898 * 270.00430 * 9 7 5 11 11 H 1.48501 * 109.46746 * 30.00177 * 9 7 5 12 12 H 1.48502 * 109.46996 * 150.00241 * 9 7 5 13 13 N 1.46896 * 109.47069 * 303.59227 * 3 2 1 14 14 C 1.46898 * 111.00044 * 174.29445 * 13 3 2 15 15 C 1.46904 * 110.99689 * 298.24996 * 13 3 2 16 16 C 1.50705 * 109.46729 * 165.10473 * 15 13 3 17 17 C 1.38390 * 119.92410 * 269.72218 * 16 15 13 18 18 C 1.38348 * 120.29978 * 179.72929 * 17 16 15 19 19 C 1.37959 * 120.15133 * 0.54630 * 18 17 16 20 20 C 1.39610 * 119.85017 * 359.73378 * 19 18 17 21 21 C 1.47729 * 120.15061 * 180.02562 * 20 19 18 22 22 O 1.21470 * 119.99629 * 179.97438 * 21 20 19 23 23 O 1.34706 * 119.99907 * 359.97233 * 21 20 19 24 24 C 1.45197 * 116.99826 * 180.02562 * 23 21 20 25 25 C 1.37922 * 119.92523 * 90.00383 * 16 15 13 26 26 H 1.09005 * 109.46975 * 304.11880 * 1 2 3 27 27 H 1.09005 * 109.46920 * 64.11278 * 1 2 3 28 28 H 1.08998 * 109.47611 * 184.11650 * 1 2 3 29 29 H 1.08992 * 109.47458 * 239.99885 * 2 1 3 30 30 H 1.09007 * 109.47290 * 119.99801 * 2 1 3 31 31 H 0.96996 * 119.99285 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46954 * 60.00245 * 14 13 3 33 33 H 1.08997 * 109.47336 * 179.97438 * 14 13 3 34 34 H 1.08997 * 109.47545 * 300.00008 * 14 13 3 35 35 H 1.09004 * 109.46868 * 285.09896 * 15 13 3 36 36 H 1.08998 * 109.47761 * 45.10476 * 15 13 3 37 37 H 1.07999 * 119.84336 * 0.02562 * 17 16 15 38 38 H 1.08000 * 119.92144 * 180.25745 * 18 17 16 39 39 H 1.08003 * 120.07902 * 179.74800 * 19 18 17 40 40 H 1.09001 * 109.47164 * 180.02562 * 24 23 21 41 41 H 1.09001 * 109.47256 * 299.99793 * 24 23 21 42 42 H 1.09000 * 109.47337 * 60.00048 * 24 23 21 43 43 H 1.08007 * 120.07768 * 359.96839 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1281 1.4432 -0.0643 5 6 1.6116 2.1268 1.2726 6 1 0.9865 3.0064 1.2287 7 6 2.0179 1.6299 2.4929 8 7 1.6444 2.2273 3.6034 9 14 3.0986 0.1081 2.5688 10 1 2.2430 -1.1035 2.6398 11 1 3.9485 0.0434 1.3528 12 1 3.9633 0.1748 3.7743 13 7 1.4808 2.1596 -1.1537 14 6 1.8395 3.5835 -1.1128 15 6 1.9124 1.5439 -2.4157 16 6 1.0523 2.0541 -3.5433 17 6 -0.1075 1.3813 -3.8858 18 6 -0.9057 1.8459 -4.9159 19 6 -0.5439 2.9781 -5.6162 20 6 0.6279 3.6585 -5.2798 21 6 1.0213 4.8719 -6.0250 22 8 2.0412 5.4619 -5.7296 23 8 0.2492 5.3238 -7.0320 24 6 0.6977 6.5210 -7.7203 25 6 1.4260 3.1872 -4.2352 26 1 -0.3633 0.5765 0.8508 27 1 -0.3633 0.4487 -0.9246 28 1 -0.3634 -1.0250 0.0738 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.9299 1.8775 4.4619 32 1 2.9246 3.6855 -1.1304 33 1 1.4133 4.0906 -1.9784 34 1 1.4473 4.0310 -0.1996 35 1 2.9539 1.8014 -2.6081 36 1 1.8130 0.4608 -2.3444 37 1 -0.3932 0.4922 -3.3433 38 1 -1.8116 1.3184 -5.1753 39 1 -1.1657 3.3374 -6.4228 40 1 -0.0132 6.7761 -8.5062 41 1 0.7644 7.3451 -7.0099 42 1 1.6781 6.3410 -8.1611 43 1 2.3335 3.7091 -3.9695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:08 Heat of formation + Delta-G solvation = -64.378247 kcal Electronic energy + Delta-G solvation = -23463.266744 eV Core-core repulsion = 20087.319133 eV Total energy + Delta-G solvation = -3375.947611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65267 -40.29577 -38.77030 -37.51499 -35.12446 -33.58698 -32.72295 -32.03049 -29.12764 -28.61511 -27.89728 -25.59836 -25.04049 -24.00185 -22.72940 -21.70048 -20.85087 -18.72974 -18.40554 -18.18557 -17.41794 -17.30161 -16.94782 -16.28788 -16.16419 -15.70473 -15.41090 -15.00868 -14.72638 -14.56166 -14.50061 -14.43831 -13.87718 -13.67224 -13.42596 -13.07269 -13.01833 -12.82663 -12.73004 -12.56729 -12.42244 -12.27976 -11.99424 -11.89879 -11.84908 -11.68867 -11.56367 -11.22678 -10.82902 -10.65051 -9.97658 -9.80030 -8.99714 -8.24737 -6.26003 -0.29488 0.38130 1.30298 1.35453 1.44257 1.48584 1.65255 2.33360 2.74480 3.09730 3.38957 3.67224 3.83811 3.91251 4.11627 4.26770 4.29111 4.31915 4.34025 4.39971 4.44742 4.50857 4.58184 4.62017 4.69932 4.77762 4.79136 4.89191 4.98549 5.05877 5.15617 5.20364 5.22642 5.28344 5.35309 5.37964 5.46582 5.61144 5.69208 5.82214 5.91764 6.04386 6.32974 6.62951 6.69869 6.80016 7.37607 8.91419 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.003719 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.279782 B = 7527.797117 C = 8073.299095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.123 4.123 3 C 0.187 3.813 4 H -0.015 1.015 5 C -0.493 4.493 6 H 0.043 0.957 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.940 3.060 10 H -0.262 1.262 11 H -0.253 1.253 12 H -0.303 1.303 13 N -0.520 5.520 14 C 0.042 3.958 15 C 0.082 3.918 16 C -0.086 4.086 17 C -0.062 4.062 18 C -0.125 4.125 19 C -0.058 4.058 20 C -0.148 4.148 21 C 0.510 3.490 22 O -0.542 6.542 23 O -0.353 6.353 24 C 0.028 3.972 25 C -0.062 4.062 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.010 0.990 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.033 0.967 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.139 0.861 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 -1.360 -23.916 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.160 4.160 3 C 0.080 3.920 4 H 0.002 0.998 5 C -0.531 4.531 6 H 0.061 0.939 7 C -0.182 4.182 8 N -0.590 5.590 9 Si 0.768 3.232 10 H -0.188 1.188 11 H -0.177 1.177 12 H -0.232 1.232 13 N -0.244 5.244 14 C -0.106 4.106 15 C -0.045 4.045 16 C -0.086 4.086 17 C -0.080 4.080 18 C -0.142 4.142 19 C -0.077 4.077 20 C -0.149 4.149 21 C 0.357 3.643 22 O -0.434 6.434 23 O -0.269 6.269 24 C -0.064 4.064 25 C -0.081 4.081 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.118 0.882 37 H 0.164 0.836 38 H 0.184 0.816 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.263 -1.188 -23.651 24.259 hybrid contribution 1.864 0.216 0.914 2.087 sum -3.399 -0.972 -22.737 23.010 Atomic orbital electron populations 1.21384 0.94289 0.99677 1.02109 1.21873 0.98516 0.96248 0.99370 1.19598 0.91483 0.92071 0.88896 0.99800 1.21120 1.30215 1.12037 0.89755 0.93855 1.25676 0.97296 0.99964 0.95254 1.70030 1.47924 1.42735 0.98268 0.85978 0.79281 0.80737 0.77167 1.18795 1.17733 1.23170 1.61893 1.59421 1.02083 1.00953 1.22181 0.97182 0.89917 1.01349 1.21216 0.95143 1.00494 0.87629 1.19719 0.97293 0.95422 0.96211 1.21630 0.91880 0.99336 0.95181 1.21513 1.00912 0.96416 0.95369 1.21685 0.93525 0.93782 0.98670 1.19092 0.99939 0.96008 0.99872 1.21487 0.80663 0.84043 0.78067 1.90820 1.26782 1.58849 1.66958 1.86521 1.51001 1.44767 1.44597 1.23601 1.02517 0.83394 0.96936 1.21097 0.98743 0.95004 0.93251 0.95052 0.91286 0.93043 0.91191 0.94785 0.92744 0.97141 0.91607 0.92952 0.94878 0.88220 0.83641 0.81635 0.82357 0.84329 0.92246 0.91908 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 9.51 71.98 0.68 -3.65 16 2 C -0.12 -4.84 4.82 30.59 0.15 -4.69 16 3 C 0.19 8.48 1.35 44.17 0.06 8.54 16 4 H -0.02 -0.74 7.20 -2.39 -0.02 -0.75 16 5 C -0.49 -27.37 7.35 25.60 0.19 -27.19 16 6 H 0.04 2.71 6.52 -2.91 -0.02 2.69 16 7 C 0.02 0.86 5.45 84.66 0.46 1.33 16 8 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 9 Si 0.94 44.64 24.40 68.60 1.67 46.32 16 10 H -0.26 -11.72 6.84 99.48 0.68 -11.04 16 11 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 12 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 13 N -0.52 -20.36 3.74 -906.02 -3.39 -23.75 16 14 C 0.04 1.70 8.96 127.69 1.14 2.85 16 15 C 0.08 2.56 4.99 85.56 0.43 2.98 16 16 C -0.09 -2.32 5.02 -19.90 -0.10 -2.42 16 17 C -0.06 -1.33 9.69 22.33 0.22 -1.11 16 18 C -0.12 -2.11 10.03 22.23 0.22 -1.89 16 19 C -0.06 -1.10 9.62 22.54 0.22 -0.88 16 20 C -0.15 -3.72 5.87 -20.10 -0.12 -3.83 16 21 C 0.51 13.56 7.90 70.33 0.56 14.12 16 22 O -0.54 -17.75 16.14 19.93 0.32 -17.43 16 23 O -0.35 -7.24 9.82 -56.16 -0.55 -7.80 16 24 C 0.03 0.41 10.56 113.37 1.20 1.60 16 25 C -0.06 -1.75 7.61 22.54 0.17 -1.58 16 26 H 0.03 1.38 7.20 -2.38 -0.02 1.37 16 27 H 0.07 2.30 7.65 -2.38 -0.02 2.28 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 2.27 6.33 -2.39 -0.02 2.25 16 30 H 0.03 1.44 3.22 -2.38 -0.01 1.44 16 31 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.07 2.39 5.99 -2.39 -0.01 2.37 16 34 H 0.05 2.42 6.14 -2.39 -0.01 2.41 16 35 H 0.03 1.04 8.01 -2.39 -0.02 1.03 16 36 H 0.10 2.78 5.74 -2.39 -0.01 2.76 16 37 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 38 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.16 2.15 7.61 -2.91 -0.02 2.13 16 40 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.12 3.59 7.49 -2.91 -0.02 3.57 16 Total: -1.00 -70.30 341.50 4.75 -65.54 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.92 Total: 11.68 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 5.47 Total: -15.84 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -3.09 Total: -82.48 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.23 Total: -25.23 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.67 Total: 46.32 kcal Total: -70.30 4.75 -65.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.166 kcal (2) G-P(sol) polarization free energy of solvation -70.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds